Experiment set2IT085 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Tween 20 carbon source

200 most important genes:

  gene name fitness t score description  
AO356_21405 -6.4 -4.4 3-isopropylmalate dehydratase compare
AO356_14440 -6.3 -4.4 indole-3-glycerol-phosphate synthase compare
AO356_21440 -6.2 -6.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_08635 -6.2 -6.0 ATP phosphoribosyltransferase regulatory subunit compare
AO356_14435 -5.9 -4.1 anthranilate phosphoribosyltransferase compare
AO356_09525 -5.7 -5.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_22080 -5.7 -11.5 isocitrate lyase compare
AO356_09815 -5.5 -5.3 imidazoleglycerol-phosphate dehydratase compare
AO356_09520 -5.4 -3.7 phosphoribosyl-AMP cyclohydrolase compare
AO356_20830 -5.4 -3.7 phosphoadenosine phosphosulfate reductase compare
AO356_12525 -5.3 -9.6 acetylglutamate kinase compare
AO356_18325 -5.3 -12.7 argininosuccinate synthase compare
AO356_09800 -5.3 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_14420 -5.1 -14.3 anthranilate synthase compare
AO356_14100 -5.1 -10.3 malate synthase G compare
AO356_19090 -5.1 -3.5 phosphoribosylaminoimidazole synthetase compare
AO356_06970 -5.0 -8.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_13410 -5.0 -11.7 homoserine O-acetyltransferase compare
AO356_18275 -5.0 -13.6 ornithine carbamoyltransferase compare
AO356_10915 -5.0 -11.1 tryptophan synthase subunit beta compare
AO356_08735 -4.9 -13.3 phosphoserine phosphatase compare
AO356_13085 -4.8 -10.8 N-acetylglutamate synthase compare
AO356_14430 -4.8 -8.8 anthranilate synthase compare
AO356_00555 -4.7 -12.9 sulfite reductase compare
AO356_09810 -4.7 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
AO356_09375 -4.7 -23.3 glutamate synthase compare
AO356_13405 -4.6 -11.1 methionine biosynthesis protein MetW compare
AO356_21415 -4.6 -10.3 3-isopropylmalate dehydrogenase compare
AO356_21465 -4.6 -4.4 amidophosphoribosyltransferase compare
AO356_12520 -4.5 -3.1 orotate phosphoribosyltransferase compare
AO356_21400 -4.4 -5.9 isopropylmalate isomerase compare
AO356_16175 -4.4 -9.4 acetolactate synthase 3 regulatory subunit compare
AO356_06965 -4.4 -10.7 histidinol dehydrogenase compare
AO356_13250 -4.4 -10.5 dihydroxy-acid dehydratase compare
AO356_15265 -4.4 -8.6 murein hydrolase transporter LrgA conserved
AO356_16170 -4.3 -11.5 acetolactate synthase 3 catalytic subunit compare
AO356_16180 -4.2 -16.1 ketol-acid reductoisomerase compare
AO356_10910 -4.2 -10.5 tryptophan synthase subunit alpha compare
AO356_13605 -4.1 -8.8 5,10-methylenetetrahydrofolate reductase compare
AO356_19060 -4.1 -19.2 (p)ppGpp synthetase compare
AO356_10300 -4.1 -5.4 3-phosphoglycerate dehydrogenase compare
AO356_22200 -4.1 -10.3 sirohydrochlorin ferrochelatase compare
AO356_19795 -4.0 -2.8 glycerol-3-phosphate dehydrogenase compare
AO356_12780 -4.0 -9.4 argininosuccinate lyase compare
AO356_09370 -3.9 -10.9 glutamate synthase compare
AO356_15815 -3.8 -2.6 gamma-glutamyl kinase compare
AO356_09425 -3.8 -9.4 malate dehydrogenase compare
AO356_14165 -3.8 -16.5 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) conserved
AO356_10340 -3.8 -15.1 phosphoserine phosphatase compare
AO356_19085 -3.7 -9.6 phosphoribosylglycinamide formyltransferase compare
AO356_02265 -3.7 -5.6 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_12380 -3.6 -9.0 ATP-dependent DNA helicase RecG compare
AO356_06550 -3.6 -8.6 2-isopropylmalate synthase compare
AO356_21470 -3.5 -7.3 O-succinylhomoserine sulfhydrylase compare
AO356_09795 -3.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO356_10075 -3.4 -8.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_00560 -3.4 -3.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_14190 -3.4 -19.9 Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) conserved
AO356_17520 -3.4 -2.3 phosphoribosylformylglycinamidine synthase compare
AO356_15270 -3.3 -6.6 hypothetical protein conserved
AO356_21330 -3.3 -10.0 aromatic amino acid aminotransferase compare
AO356_01745 -3.3 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_02175 -3.2 -9.5 transaldolase compare
AO356_05100 -3.2 -14.7 long-chain fatty acid--CoA ligase compare
AO356_01750 -3.1 -5.0 ATP-dependent Clp protease proteolytic subunit compare
AO356_07910 -3.0 -2.8 exodeoxyribonuclease V subunit alpha compare
AO356_11315 -3.0 -2.0 shikimate dehydrogenase compare
AO356_07480 -2.9 -2.7 carbamoyl phosphate synthase large subunit compare
AO356_04285 -2.8 -16.0 isocitrate dehydrogenase compare
AO356_16600 -2.8 -3.3 malate:quinone oxidoreductase compare
AO356_07545 -2.8 -15.4 transcriptional regulator PdhR compare
AO356_16075 -2.7 -5.7 Fis family transcriptional regulator compare
AO356_06960 -2.6 -8.2 histidinol-phosphate aminotransferase compare
AO356_19050 -2.6 -3.3 cysteine synthase compare
AO356_16665 -2.6 -13.2 sulfate adenylyltransferase compare
AO356_11025 -2.5 -6.6 transcriptional regulator PhoU compare
AO356_02325 -2.5 -3.6 3-ketoacyl-CoA thiolase compare
AO356_16670 -2.4 -11.6 adenylylsulfate kinase compare
AO356_16095 -2.4 -8.2 molecular chaperone DnaK compare
AO356_18025 -2.3 -4.0 ATP-dependent DNA helicase RuvB compare
AO356_03435 -2.2 -4.2 integration host factor subunit beta compare
AO356_10140 -2.2 -8.1 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_06575 -2.1 -4.2 outer membrane protein assembly factor BamB compare
AO356_07005 -2.1 -3.0 ABC transporter ATP-binding protein compare
AO356_12895 -2.0 -15.6 polyphosphate kinase compare
AO356_12020 -1.9 -11.3 pyruvate carboxylase subunit A compare
AO356_08235 -1.9 -7.6 histidine kinase compare
AO356_26645 -1.9 -1.5 crotonase compare
AO356_12025 -1.8 -10.8 pyruvate carboxylase subunit B compare
AO356_14295 -1.8 -2.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_20175 -1.7 -2.5 3-oxoacyl-ACP synthase compare
AO356_10185 -1.7 -7.9 glutamate--cysteine ligase compare
AO356_12725 -1.7 -4.9 recombinase XerC compare
AO356_16050 -1.7 -3.7 glucose-6-phosphate isomerase compare
AO356_02290 -1.6 -3.9 TetR family transcriptional regulator compare
AO356_17950 -1.6 -8.4 histidine kinase compare
AO356_03180 -1.6 -3.9 CysB family transcriptional regulator compare
AO356_12990 -1.6 -7.1 5-formyltetrahydrofolate cyclo-ligase compare
AO356_06385 -1.6 -4.0 recombinase XerD compare
AO356_13395 -1.5 -2.1 non-canonical purine NTP pyrophosphatase compare
AO356_18020 -1.5 -3.5 ATP-dependent DNA helicase RuvA compare
AO356_12375 -1.5 -8.5 histidine kinase compare
AO356_18730 -1.5 -7.0 arginine N-succinyltransferase compare
AO356_11850 -1.5 -10.4 glycosyltransferase compare
AO356_07915 -1.5 -3.3 exodeoxyribonuclease V subunit beta compare
AO356_13685 -1.5 -3.8 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_19175 -1.4 -4.6 alpha-ribazole phosphatase compare
AO356_21410 -1.4 -2.3 SAM-dependent methyltransferase compare
AO356_20155 -1.4 -6.3 phosphate acyltransferase compare
AO356_10330 -1.4 -9.9 threonine dehydratase compare
AO356_11845 -1.4 -9.8 glycosyltransferase compare
AO356_07195 -1.4 -5.5 GntR family transcriptional regulator compare
AO356_13475 -1.4 -6.0 glutathione synthetase compare
AO356_13505 -1.3 -2.9 chemotaxis protein compare
AO356_21460 -1.3 -2.2 colicin V production CvpA compare
AO356_04560 -1.3 -2.5 serine peptidase compare
AO356_29730 -1.3 -2.6 MarR family transcriptional regulator compare
AO356_16060 -1.3 -3.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_05630 -1.3 -3.6 LysR family transcriptional regulator compare
AO356_07495 -1.3 -2.8 molecular chaperone DnaJ compare
AO356_02315 -1.2 -3.8 DNA topoisomerase I compare
AO356_14075 -1.2 -2.2 amino acid ABC transporter substrate-binding protein compare
AO356_17985 -1.2 -3.9 cold-shock protein compare
AO356_18805 -1.2 -1.1 magnesium transporter compare
AO356_06050 -1.2 -8.3 protein-PII uridylyltransferase compare
AO356_08265 -1.2 -4.6 precorrin-3B C17-methyltransferase compare
AO356_21765 -1.2 -1.6 GntR family transcriptional regulator compare
AO356_00530 -1.2 -3.6 precorrin-4 C11-methyltransferase compare
AO356_00880 -1.1 -1.6 integration host factor subunit alpha compare
AO356_10870 -1.1 -7.4 NAD synthetase compare
AO356_30345 -1.1 -3.9 IclR family transcriptional regulator compare
AO356_08275 -1.1 -3.6 precorrin isomerase compare
AO356_12015 -1.1 -5.3 LysR family transcriptional regulator compare
AO356_24845 -1.1 -2.8 ATPase compare
AO356_16070 -1.1 -4.2 poly(A) polymerase compare
AO356_09730 -1.1 -4.5 nitrogen regulation protein NR(I) compare
AO356_12735 -1.1 -1.9 diaminopimelate epimerase compare
AO356_07920 -1.0 -4.2 exodeoxyribonuclease V subunit gamma compare
AO356_19170 -1.0 -3.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO356_02465 -1.0 -1.8 carbonate dehydratase compare
AO356_00525 -1.0 -2.5 cobalamin biosynthesis protein CobE compare
AO356_21640 -1.0 -3.7 acetyl-CoA C-acetyltransferase [EC: 2.3.1.9] (from data) compare
AO356_29355 -1.0 -1.6 hypothetical protein compare
AO356_17035 -1.0 -4.1 ATPase compare
AO356_02195 -1.0 -2.8 phosphatase compare
AO356_19150 -1.0 -4.2 cobalamin biosynthesis protein CobD compare
AO356_05895 -1.0 -4.9 protein-L-isoaspartate O-methyltransferase compare
AO356_22135 -1.0 -7.0 isocitrate dehydrogenase compare
AO356_02815 -1.0 -4.3 ribonuclease activity regulator protein RraA compare
AO356_04460 -1.0 -2.3 sugar translocase compare
AO356_12730 -1.0 -2.8 hypothetical protein compare
AO356_10345 -1.0 -3.9 RNA pyrophosphohydrolase compare
AO356_10860 -1.0 -6.2 NADP transhydrogenase subunit alpha conserved
AO356_22795 -1.0 -3.0 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_01545 -1.0 -1.5 hypothetical protein compare
AO356_26655 -0.9 -2.2 (2Fe-2S)-binding protein compare
AO356_00500 -0.9 -3.2 magnesium chelatase compare
AO356_17470 -0.9 -5.1 aminopeptidase compare
AO356_10005 -0.9 -6.1 branched-chain amino acid permease (azaleucine resistance) compare
AO356_12900 -0.9 -2.8 exopolyphosphatase compare
AO356_20395 -0.9 -1.4 acetyl-CoA acetyltransferase compare
AO356_06990 -0.9 -3.4 toluene tolerance protein compare
AO356_14335 -0.9 -2.1 rRNA methyltransferase compare
AO356_19135 -0.9 -2.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO356_10865 -0.9 -3.0 NAD(P) transhydrogenase compare
AO356_11680 -0.9 -2.0 chromosome partitioning protein ParB compare
AO356_17075 -0.9 -1.9 cytochrome C compare
AO356_07730 -0.9 -2.1 hypothetical protein compare
AO356_14135 -0.9 -6.6 biotin synthase compare
AO356_25720 -0.9 -2.0 polyamine ABC transporter permease compare
AO356_19180 -0.9 -3.7 cobalamin synthase compare
AO356_24550 -0.9 -1.7 hypothetical protein compare
AO356_19425 -0.9 -1.7 lipid A biosynthesis lauroyl acyltransferase compare
AO356_12715 -0.9 -3.3 hypothetical protein compare
AO356_08280 -0.9 -2.8 oxidoreductase compare
AO356_19160 -0.9 -4.2 cobyric acid synthase compare
AO356_12515 -0.9 -2.4 exodeoxyribonuclease III compare
AO356_01625 -0.8 -1.9 RNA polymerase subunit sigma-24 compare
AO356_11030 -0.8 -5.8 phosphate ABC transporter ATP-binding protein compare
AO356_09725 -0.8 -3.4 histidine kinase compare
AO356_08905 -0.8 -1.1 glycosyl transferase compare
AO356_05250 -0.8 -2.0 hypothetical protein compare
AO356_00920 -0.8 -1.7 cold-shock protein compare
AO356_08300 -0.8 -2.7 cobalt-precorrin-6X reductase compare
AO356_00505 -0.8 -4.6 cobalamin biosynthesis protein CobN compare
AO356_07000 -0.8 -1.9 ABC transporter permease compare
AO356_07390 -0.8 -1.4 polyribonucleotide nucleotidyltransferase compare
AO356_26040 -0.8 -1.3 hypothetical protein compare
AO356_14790 -0.8 -4.1 MFS transporter compare
AO356_19155 -0.8 -4.9 threonine-phosphate decarboxylase compare
AO356_02190 -0.8 -4.0 hypothetical protein compare
AO356_16435 -0.8 -1.2 hypothetical protein compare
AO356_00545 -0.8 -5.3 methionine synthase compare
AO356_06690 -0.8 -2.3 queuine tRNA-ribosyltransferase compare
AO356_11675 -0.8 -4.4 chromosome partitioning protein compare
AO356_27215 -0.8 -2.4 hypothetical protein compare
AO356_08290 -0.8 -1.5 precorrin-6Y C5,15-methyltransferase compare
AO356_21695 -0.8 -3.2 hypothetical protein compare
AO356_02460 -0.8 -0.8 hypothetical protein compare
AO356_03360 -0.8 -2.4 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source Tween 20 in Pseudomonas fluorescens FW300-N2C3

For carbon source Tween 20 across organisms