Experiment set2IT085 for Rahnella sp. WP5

Compare to:

NLDM_metabolites carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS25140 -5.0 -2.5 AlpA family transcriptional regulator compare
EX31_RS25410 -4.4 -1.2 transposase compare
EX31_RS09995 -4.3 -2.7 YkgJ family cysteine cluster protein compare
EX31_RS11115 -4.2 -2.9 creatininase family protein compare
EX31_RS25690 -4.1 -2.3 tyrosine-type recombinase/integrase compare
EX31_RS25595 -3.9 -1.9 hypothetical protein compare
EX31_RS03190 -3.8 -2.4 hypothetical protein compare
EX31_RS16555 -3.8 -2.1 PTS sugar transporter subunit IIB compare
EX31_RS07415 -3.7 -1.8 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS12400 -3.7 -2.6 RNA polymerase factor sigma-54 compare
EX31_RS00625 -3.7 -1.7 YgdI/YgdR family lipoprotein compare
EX31_RS18570 -3.6 -1.8 cold shock-like protein CspD compare
EX31_RS01805 -3.6 -1.8 hypothetical protein compare
EX31_RS02520 -3.6 -3.5 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS26085 -3.5 -1.7 alpha/beta hydrolase compare
EX31_RS05825 -3.2 -2.2 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS25105 -3.2 -1.3 DUF2474 domain-containing protein compare
EX31_RS10490 -3.1 -2.0 putative selenium delivery protein YdfZ compare
EX31_RS01965 -3.1 -3.0 DUF2931 family protein compare
EX31_RS11125 -3.1 -2.1 ABC transporter ATP-binding protein compare
EX31_RS14730 -3.1 -0.9 DUF2756 domain-containing protein compare
EX31_RS09650 -3.1 -1.5 GrxA family glutaredoxin compare
EX31_RS03900 -3.0 -4.0 molecular chaperone DnaK compare
EX31_RS20180 -3.0 -2.2 phosphocarrier protein Hpr compare
EX31_RS24600 -3.0 -1.2 hypothetical protein compare
EX31_RS12240 -2.9 -1.7 rod shape-determining protein MreC compare
EX31_RS02515 -2.9 -5.1 PAS domain-containing protein compare
EX31_RS08745 -2.8 -1.6 50S ribosomal protein L9 compare
EX31_RS24450 -2.8 -1.9 aminodeoxychorismate lyase compare
EX31_RS19205 -2.8 -3.2 50S ribosomal protein L25 compare
EX31_RS02365 -2.7 -1.0 hypothetical protein compare
EX31_RS07380 -2.7 -1.8 redox-regulated ATPase YchF compare
EX31_RS20190 -2.7 -1.5 PTS glucose transporter subunit IIA compare
EX31_RS25910 -2.7 -1.0 hypothetical protein compare
EX31_RS06505 -2.7 -3.7 acid resistance repetitive basic protein Asr compare
EX31_RS01970 -2.6 -1.0 hypothetical protein compare
EX31_RS02530 -2.6 -4.0 ABC transporter ATP-binding protein compare
EX31_RS25665 -2.6 -2.3 DUF2502 domain-containing protein compare
EX31_RS09490 -2.6 -1.2 hypothetical protein compare
EX31_RS07590 -2.6 -1.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS09565 -2.5 -0.9 flagellar hook-length control protein FliK compare
EX31_RS02490 -2.5 -3.3 3-oxoacyl-ACP synthase compare
EX31_RS15530 -2.4 -0.9 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit compare
EX31_RS21470 -2.4 -8.7 phosphoglycerate dehydrogenase compare
EX31_RS24745 -2.4 -3.3 hypothetical protein compare
EX31_RS02465 -2.4 -2.1 hypothetical protein compare
EX31_RS19395 -2.4 -1.6 NADH-quinone oxidoreductase subunit J compare
EX31_RS22145 -2.4 -2.2 phosphatidylglycerophosphatase A compare
EX31_RS14340 -2.4 -1.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS04035 -2.4 -9.6 phosphoserine phosphatase compare
EX31_RS20000 -2.3 -3.1 nuclear transport factor 2 family protein compare
EX31_RS01260 -2.3 -2.0 YebG family protein compare
EX31_RS13815 -2.3 -0.9 ribonuclease T compare
EX31_RS10035 -2.3 -1.4 cardiolipin synthase compare
EX31_RS11690 -2.2 -2.4 dihydroneopterin triphosphate diphosphatase compare
EX31_RS07520 -2.2 -2.2 ornithine cyclodeaminase compare
EX31_RS02385 -2.2 -0.8 hypothetical protein compare
EX31_RS16720 -2.2 -2.9 helix-turn-helix domain-containing protein compare
EX31_RS06055 -2.1 -3.6 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS07340 -2.1 -1.0 stress-induced protein YchH compare
EX31_RS01005 -2.1 -2.8 DotU family type IV/VI secretion system protein compare
EX31_RS07470 -2.1 -1.5 hypothetical protein compare
EX31_RS15155 -2.1 -1.4 diaminopimelate epimerase compare
EX31_RS21020 -2.0 -1.4 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS22810 -2.0 -1.5 helix-turn-helix domain-containing protein compare
EX31_RS14040 -2.0 -2.2 DUF2502 domain-containing protein compare
EX31_RS22430 -2.0 -1.4 hemolysin expression modulator Hha compare
EX31_RS15540 -2.0 -1.2 SDR family oxidoreductase compare
EX31_RS16680 -1.9 -1.5 enoyl-CoA hydratase compare
EX31_RS25365 -1.9 -0.9 50S ribosomal protein L31 compare
EX31_RS14030 -1.9 -3.0 glutathione peroxidase compare
EX31_RS18540 -1.9 -1.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS01605 -1.9 -1.6 tail protein compare
EX31_RS03400 -1.9 -5.0 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS00130 -1.9 -2.4 GGDEF domain-containing protein compare
EX31_RS25660 -1.9 -1.5 multidrug efflux pump-associated protein, AcrZ family compare
EX31_RS06000 -1.9 -3.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS25630 -1.8 -2.0 DUF3606 domain-containing protein compare
EX31_RS01510 -1.8 -3.1 DinI-like family protein compare
EX31_RS07475 -1.8 -1.0 hypothetical protein compare
EX31_RS20930 -1.8 -1.8 hypothetical protein compare
EX31_RS03955 -1.8 -4.4 two-component system response regulator ArcA compare
EX31_RS15655 -1.8 -1.3 hypothetical protein compare
EX31_RS01955 -1.8 -1.8 DUF2931 family protein compare
EX31_RS12875 -1.8 -1.7 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS21825 -1.8 -5.1 elongation factor 4 compare
EX31_RS10825 -1.7 -1.3 hypothetical protein compare
EX31_RS02125 -1.7 -2.6 helix-turn-helix transcriptional regulator compare
EX31_RS06635 -1.7 -2.8 L-arabinose isomerase compare
EX31_RS02455 -1.7 -2.6 VOC family protein compare
EX31_RS21295 -1.7 -2.3 acyl carrier protein compare
EX31_RS10260 -1.7 -1.8 hypothetical protein compare
EX31_RS01655 -1.7 -2.1 hypothetical protein compare
EX31_RS09700 -1.7 -2.9 GlpM family protein compare
EX31_RS07610 -1.7 -1.4 conjugal transfer protein TraR compare
EX31_RS14005 -1.7 -2.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
EX31_RS03480 -1.6 -2.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS18255 -1.6 -3.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS24380 -1.6 -1.4 DNA damage-inducible protein I compare
EX31_RS07245 -1.6 -2.5 ABC transporter ATP-binding protein compare
EX31_RS20975 -1.6 -4.2 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS12520 -1.6 -8.3 aerobic respiration two-component sensor histidine kinase ArcB compare
EX31_RS25725 -1.6 -1.7 hypothetical protein compare
EX31_RS06845 -1.6 -2.2 MmgE/PrpD family protein compare
EX31_RS08650 -1.6 -1.9 transcriptional regulator ArgR compare
EX31_RS00710 -1.6 -3.4 HAMP domain-containing protein compare
EX31_RS19505 -1.6 -2.0 PTS sugar transporter subunit IIB compare
EX31_RS08130 -1.6 -1.6 accessory factor UbiK family protein compare
EX31_RS25340 -1.6 -3.2 hypothetical protein compare
EX31_RS16640 -1.6 -4.1 gluconokinase compare
EX31_RS19010 -1.6 -2.1 alkylphosphonate utilization protein compare
EX31_RS16515 -1.6 -3.8 GGDEF domain-containing protein compare
EX31_RS02690 -1.6 -3.0 pyrroline-5-carboxylate reductase compare
EX31_RS09580 -1.6 -1.1 flagellar motor switch protein FliN compare
EX31_RS06070 -1.5 -6.1 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS20620 -1.5 -2.8 two-component system QseEF-associated lipoprotein QseG compare
EX31_RS06820 -1.5 -2.3 amino acid ABC transporter permease compare
EX31_RS02495 -1.5 -3.0 cytochrome P450 compare
EX31_RS07410 -1.5 -1.3 NAD(P)H-dependent oxidoreductase compare
EX31_RS14345 -1.5 -1.8 protein-export chaperone SecB compare
EX31_RS14310 -1.5 -3.5 6-phosphofructokinase compare
EX31_RS20410 -1.5 -2.7 hypothetical protein compare
EX31_RS00715 -1.5 -2.1 class A beta-lactamase compare
EX31_RS06895 -1.5 -3.4 HlyD family secretion protein compare
EX31_RS13780 -1.5 -1.5 DUF1656 domain-containing protein compare
EX31_RS00780 -1.5 -3.0 two-component system response regulator BtsR compare
EX31_RS22620 -1.5 -3.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS00635 -1.4 -1.3 hypothetical protein compare
EX31_RS11605 -1.4 -3.2 helix-turn-helix transcriptional regulator compare
EX31_RS25945 -1.4 -1.8 hypothetical protein compare
EX31_RS04105 -1.4 -1.9 helix-turn-helix domain-containing protein compare
EX31_RS02200 -1.4 -3.3 Hcp family type VI secretion system effector compare
EX31_RS09190 -1.4 -2.1 ABC transporter permease compare
EX31_RS11460 -1.4 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS01285 -1.4 -2.8 sulfite exporter TauE/SafE family protein compare
EX31_RS11205 -1.4 -2.6 chemotaxis protein CheV compare
EX31_RS01390 -1.3 -1.3 hypothetical protein compare
EX31_RS03935 -1.3 -4.8 threonine synthase compare
EX31_RS11350 -1.3 -2.1 protein phosphatase CheZ compare
EX31_RS06735 -1.3 -1.5 HutD family protein compare
EX31_RS01290 -1.3 -1.6 LysR family transcriptional regulator compare
EX31_RS25405 -1.3 -2.0 DUF2767 family protein compare
EX31_RS03220 -1.3 -0.9 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS02480 -1.3 -2.6 acyl-CoA/acyl-ACP dehydrogenase compare
EX31_RS13045 -1.3 -7.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS24755 -1.3 -3.5 prolyl aminopeptidase compare
EX31_RS06580 -1.3 -1.7 LysR family transcriptional regulator compare
EX31_RS03710 -1.3 -1.0 glucose uptake inhibitor SgrT compare
EX31_RS02020 -1.3 -1.6 MFS transporter compare
EX31_RS20495 -1.3 -5.0 outer membrane protein assembly factor BamB compare
EX31_RS00830 -1.3 -2.3 ABC transporter ATP-binding protein compare
EX31_RS16655 -1.3 -0.8 hypothetical protein compare
EX31_RS07105 -1.3 -2.2 DUF3811 domain-containing protein compare
EX31_RS12215 -1.3 -3.5 type II 3-dehydroquinate dehydratase compare
EX31_RS00835 -1.3 -2.7 branched-chain amino acid ABC transporter permease compare
EX31_RS18150 -1.3 -1.4 MBL fold metallo-hydrolase compare
EX31_RS22625 -1.3 -1.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS20530 -1.3 -3.7 nucleoside-diphosphate kinase compare
EX31_RS02960 -1.3 -2.7 hypothetical protein compare
EX31_RS24110 -1.3 -3.6 D-serine/D-alanine/glycine transporter compare
EX31_RS23835 -1.3 -3.7 phosphonate ABC transporter substrate-binding protein compare
EX31_RS09895 -1.3 -1.8 type I DNA topoisomerase compare
EX31_RS00945 -1.3 -2.2 type VI secretion system contractile sheath small subunit compare
EX31_RS04520 -1.2 -1.8 YheU family protein compare
EX31_RS01430 -1.2 -2.5 type 1 glutamine amidotransferase domain-containing protein compare
EX31_RS09265 -1.2 -1.8 L-Ala-D/L-Glu epimerase compare
EX31_RS23785 -1.2 -1.7 DUF262 domain-containing protein compare
EX31_RS03790 -1.2 -1.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS06060 -1.2 -1.9 phosphate ABC transporter permease PstA compare
EX31_RS20840 -1.2 -1.5 hypothetical protein compare
EX31_RS25555 -1.2 -0.9 GpE family phage tail protein compare
EX31_RS06370 -1.2 -2.3 hypothetical protein compare
EX31_RS20090 -1.2 -1.7 tRNA-Ala compare
EX31_RS11245 -1.2 -3.1 amino acid ABC transporter permease compare
EX31_RS21570 -1.2 -1.2 hypothetical protein compare
EX31_RS18120 -1.2 -1.6 aliphatic sulfonates ABC transporter ATP-binding protein compare
EX31_RS09845 -1.2 -1.6 osmotically-inducible lipoprotein OsmB compare
EX31_RS19000 -1.2 -2.4 flavin reductase family protein compare
EX31_RS10040 -1.2 -3.2 YciU family protein compare
EX31_RS20210 -1.2 -3.5 sulfate/thiosulfate ABC transporter ATP-binding protein CysA compare
EX31_RS07745 -1.2 -1.5 S-ribosylhomocysteine lyase compare
EX31_RS00970 -1.2 -3.5 type VI secretion system baseplate subunit TssG compare
EX31_RS04295 -1.2 -1.9 hypothetical protein compare
EX31_RS08545 -1.2 -3.0 transcription termination/antitermination protein NusA compare
EX31_RS09530 -1.2 -2.0 hypothetical protein compare
EX31_RS06530 -1.2 -3.7 cytochrome c compare
EX31_RS01000 -1.2 -3.3 type VI secretion system baseplate subunit TssK compare
EX31_RS01535 -1.2 -2.0 hypothetical protein compare
EX31_RS20185 -1.2 -3.2 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS00790 -1.2 -2.6 YbdD/YjiX family protein compare
EX31_RS25415 -1.2 -0.6 helix-turn-helix domain-containing protein compare
EX31_RS09350 -1.2 -1.7 ATP-binding cassette domain-containing protein compare
EX31_RS01670 -1.2 -2.3 lysozyme compare
EX31_RS10605 -1.2 -1.9 Slp family lipoprotein compare
EX31_RS19610 -1.2 -4.0 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS24945 -1.2 -0.8 5S ribosomal RNA compare
EX31_RS19280 -1.2 -2.1 transcriptional regulator RcsB compare
EX31_RS20880 -1.1 -1.7 hypothetical protein compare
EX31_RS18530 -1.1 -5.6 leucine-responsive transcriptional regulator Lrp compare
EX31_RS02320 -1.1 -1.7 LysR family transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source NLDM_metabolites in Rahnella sp. WP5

For carbon source NLDM_metabolites across organisms