Experiment set2IT085 for Rahnella sp. WP5

Compare to:

NLDM_metabolites carbon source

200 most detrimental genes:

  gene name fitness t score description  
EX31_RS07955 +3.4 26.8 GTP diphosphokinase compare
EX31_RS11335 +2.7 2.7 flagellar protein FlhE compare
EX31_RS17640 +2.4 2.9 TetR/AcrR family transcriptional regulator compare
EX31_RS07825 +2.3 18.3 RNA polymerase sigma factor RpoS compare
EX31_RS11840 +2.3 11.6 diacylglycerol kinase compare
EX31_RS03570 +2.2 2.6 DUF721 domain-containing protein compare
EX31_RS23500 +2.2 5.9 peptidoglycan-associated lipoprotein Pal compare
EX31_RS02920 +2.1 1.6 glycosyltransferase compare
EX31_RS09550 +2.1 3.2 flagellar assembly protein FliH compare
EX31_RS23245 +2.0 17.5 asparagine synthase B compare
EX31_RS01085 +1.9 5.1 ATP-binding cassette domain-containing protein compare
EX31_RS10090 +1.9 4.7 NAD-dependent epimerase compare
EX31_RS15085 +1.9 4.5 lipid III flippase WzxE compare
EX31_RS07830 +1.8 6.8 murein hydrolase activator NlpD compare
EX31_RS04645 +1.7 1.1 DUF2559 family protein compare
EX31_RS23420 +1.7 4.7 succinate dehydrogenase cytochrome b556 subunit compare
EX31_RS26040 +1.6 1.6 hypothetical protein compare
EX31_RS23495 +1.6 6.9 Tol-Pal system protein TolB compare
EX31_RS18040 +1.6 11.3 porin OmpA compare
EX31_RS16645 +1.5 1.5 DUF1471 domain-containing protein compare
EX31_RS25530 +1.5 2.8 hypothetical protein compare
EX31_RS02080 +1.5 3.0 FadR family transcriptional regulator compare
EX31_RS14405 +1.5 2.1 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS07180 +1.5 3.7 DNA endonuclease SmrA compare
EX31_RS15095 +1.5 2.9 O-antigen assembly polymerase compare
EX31_RS09080 +1.5 1.4 LysR family transcriptional regulator compare
EX31_RS23430 +1.5 8.9 succinate dehydrogenase flavoprotein subunit compare
EX31_RS14435 +1.4 5.8 glycosyltransferase family 4 protein compare
EX31_RS09360 +1.4 2.7 ABC transporter permease compare
EX31_RS00315 +1.4 3.3 heme-binding protein compare
EX31_RS01500 +1.4 3.2 transcriptional regulator compare
EX31_RS09535 +1.4 1.7 flagellar hook-basal body complex protein FliE compare
EX31_RS03830 +1.4 11.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS09475 +1.4 5.1 AraC family transcriptional regulator compare
EX31_RS12785 +1.4 9.0 aspartate carbamoyltransferase compare
EX31_RS11385 +1.3 3.0 hypothetical protein compare
EX31_RS09670 +1.3 1.4 bleomycin resistance protein compare
EX31_RS01915 +1.3 2.5 hypothetical protein compare
EX31_RS09335 +1.3 2.7 hypothetical protein compare
EX31_RS11625 +1.3 0.7 hypothetical protein compare
EX31_RS09590 +1.3 2.3 flagellar type III secretion system pore protein FliP compare
EX31_RS02765 +1.3 3.6 acetyltransferase compare
EX31_RS23435 +1.3 4.8 succinate dehydrogenase iron-sulfur subunit compare
EX31_RS17475 +1.2 2.8 SDR family oxidoreductase compare
EX31_RS23860 +1.2 2.2 hypothetical protein compare
EX31_RS21300 +1.2 2.0 acyl carrier protein compare
EX31_RS22270 +1.2 0.7 competence protein ComEA compare
EX31_RS14160 +1.2 5.3 HTH-type transcriptional repressor FabR compare
EX31_RS18625 +1.2 2.2 heavy metal-binding domain-containing protein compare
EX31_RS10340 +1.2 2.0 GNAT family N-acetyltransferase compare
EX31_RS23925 +1.2 4.1 suppressor of fused domain protein compare
EX31_RS01760 +1.2 4.1 hypothetical protein compare
EX31_RS14500 +1.2 6.6 orotate phosphoribosyltransferase compare
EX31_RS25225 +1.2 2.0 hypothetical protein compare
EX31_RS01190 +1.1 1.9 hypothetical protein compare
EX31_RS15525 +1.1 2.1 nitrogen assimilation transcriptional regulator compare
EX31_RS14445 +1.1 4.0 glycosyltransferase family 2 protein compare
EX31_RS08595 +1.1 2.5 transcription elongation factor GreA compare
EX31_RS11260 +1.1 2.7 CidB/LrgB family autolysis modulator compare
EX31_RS17615 +1.1 2.7 hypothetical protein compare
EX31_RS03250 +1.1 6.1 RNA polymerase-binding protein DksA compare
EX31_RS23425 +1.1 4.6 succinate dehydrogenase membrane anchor subunit compare
EX31_RS19320 +1.1 2.3 nicotinamide mononucleotide deamidase-related protein YfaY compare
EX31_RS15360 +1.1 3.9 Fe-S cluster assembly protein NifU compare
EX31_RS13745 +1.1 2.7 pyridoxal kinase PdxY compare
EX31_RS07305 +1.1 3.0 siroheme synthase compare
EX31_RS24765 +1.1 2.5 non-heme ferritin compare
EX31_RS25295 +1.1 1.3 GhoT/OrtT family toxin compare
EX31_RS14400 +1.1 3.2 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS25895 +1.1 1.3 DinI-like family protein compare
EX31_RS13725 +1.1 2.6 hypothetical protein compare
EX31_RS00545 +1.0 2.4 molybdopterin-dependent oxidoreductase compare
EX31_RS21440 +1.0 2.4 arginine exporter ArgO compare
EX31_RS18045 +1.0 1.7 macrodomain Ter protein MatP compare
EX31_RS05245 +1.0 1.7 PTS sugar transporter subunit IIB compare
EX31_RS24625 +1.0 1.3 DUF2766 domain-containing protein compare
EX31_RS06810 +1.0 1.2 LysR family transcriptional regulator compare
EX31_RS03835 +1.0 5.6 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS09560 +1.0 2.2 flagella biosynthesis chaperone FliJ compare
EX31_RS17465 +1.0 1.9 hypothetical protein compare
EX31_RS24190 +1.0 1.8 DNA gyrase inhibitor compare
EX31_RS15630 +1.0 1.8 YgdI/YgdR family lipoprotein compare
EX31_RS17245 +1.0 2.2 hypothetical protein compare
EX31_RS11675 +1.0 1.2 Holliday junction branch migration protein RuvA compare
EX31_RS18450 +1.0 1.2 hypothetical protein compare
EX31_RS13480 +1.0 3.2 site-specific tyrosine recombinase XerD compare
EX31_RS06780 +1.0 1.8 glucose 1-dehydrogenase compare
EX31_RS03340 +0.9 1.6 transcriptional regulator GutM compare
EX31_RS09925 +0.9 1.4 alpha-ribazole phosphatase compare
EX31_RS25245 +0.9 2.6 late control protein B compare
EX31_RS22300 +0.9 2.6 Lrp/AsnC family transcriptional regulator compare
EX31_RS15120 +0.9 1.8 tRNA-Leu compare
EX31_RS06565 +0.9 2.1 Ni(II)/Co(II)-binding transcriptional repressor RcnR compare
EX31_RS15920 +0.9 1.6 YihD family protein compare
EX31_RS16625 +0.9 0.6 bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase compare
EX31_RS21805 +0.9 1.8 anti-sigma-E factor RseA compare
EX31_RS14550 +0.9 1.3 Trk system potassium transporter TrkH compare
EX31_RS01310 +0.9 2.1 DUF2493 domain-containing protein compare
EX31_RS25400 +0.9 1.2 transcriptional regulator compare
EX31_RS19420 +0.9 1.9 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS15375 +0.9 1.9 nitrogen fixation protein NifW compare
EX31_RS12930 +0.9 2.2 Rho-binding antiterminator compare
EX31_RS02955 +0.9 3.7 YjbF family lipoprotein compare
EX31_RS06825 +0.9 1.7 amino acid ABC transporter ATP-binding protein compare
EX31_RS10105 +0.9 2.2 patatin-like phospholipase RssA compare
EX31_RS06795 +0.9 2.4 ABC transporter ATP-binding protein compare
EX31_RS06980 +0.9 1.5 iron ABC transporter ATP-binding protein FetA compare
EX31_RS24120 +0.9 2.0 hypothetical protein compare
EX31_RS16675 +0.9 2.1 histidine utilization repressor compare
EX31_RS01280 +0.9 1.2 SgcJ/EcaC family oxidoreductase compare
EX31_RS11295 +0.9 3.8 flagellar basal body rod protein FlgF compare
EX31_RS20240 +0.9 2.6 DUF2919 domain-containing protein compare
EX31_RS10055 +0.9 1.7 oligopeptide ABC transporter permease OppC compare
EX31_RS11425 +0.9 2.1 flagellar transcriptional regulator FlhD compare
EX31_RS06800 +0.9 1.9 ABC transporter permease compare
EX31_RS02135 +0.9 1.6 antibiotic biosynthesis monooxygenase compare
EX31_RS24880 +0.9 7.0 carboxy terminal-processing peptidase compare
EX31_RS10485 +0.9 2.6 D-amino acid dehydrogenase compare
EX31_RS19105 +0.8 2.3 hypothetical protein compare
EX31_RS16960 +0.8 1.9 ABC transporter substrate-binding protein compare
EX31_RS15680 +0.8 2.6 envelope stress response membrane protein PspB compare
EX31_RS20895 +0.8 1.3 hypothetical protein compare
EX31_RS19895 +0.8 1.3 hydrogenase maturation nickel metallochaperone HypA compare
EX31_RS01715 +0.8 1.6 DNA replication protein compare
EX31_RS06270 +0.8 1.4 aldo/keto reductase compare
EX31_RS22565 +0.8 2.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK compare
EX31_RS16740 +0.8 2.1 transcriptional regulator compare
EX31_RS22965 +0.8 2.1 DUF2461 domain-containing protein compare
EX31_RS17010 +0.8 1.1 sugar ABC transporter permease compare
EX31_RS15975 +0.8 1.4 peptide deformylase compare
EX31_RS09515 +0.8 1.6 GNAT family N-acetyltransferase compare
EX31_RS03085 +0.8 2.8 hypothetical protein compare
EX31_RS09305 +0.8 1.5 respiratory nitrate reductase subunit gamma compare
EX31_RS10435 +0.8 1.3 biotin-dependent carboxyltransferase family protein compare
EX31_RS10660 +0.8 2.5 MFS transporter compare
EX31_RS13920 +0.8 2.3 hotdog fold thioesterase compare
EX31_RS05485 +0.8 4.5 endoglucanase compare
EX31_RS19260 +0.8 4.4 type I secretion system permease/ATPase compare
EX31_RS11615 +0.8 3.1 fumarylacetoacetate hydrolase family protein compare
EX31_RS06985 +0.8 1.2 iron export ABC transporter permease subunit FetB compare
EX31_RS22550 +0.8 2.8 Kef family K(+) transporter compare
EX31_RS16250 +0.8 2.4 hypothetical protein compare
EX31_RS16510 +0.8 2.8 EAL domain-containing protein compare
EX31_RS04855 +0.8 2.0 iron transporter FeoC compare
EX31_RS09245 +0.8 2.1 ABC transporter permease subunit compare
EX31_RS10535 +0.8 0.5 GtrA family protein compare
EX31_RS13875 +0.8 2.6 major outer membrane lipoprotein compare
EX31_RS02295 +0.8 1.6 gluconate 2-dehydrogenase subunit 3 family protein compare
EX31_RS07430 +0.7 1.7 transporter substrate-binding domain-containing protein compare
EX31_RS20940 +0.7 1.0 AlpA family transcriptional regulator compare
EX31_RS09470 +0.7 1.9 flagella biosynthesis regulatory protein FliT compare
EX31_RS02225 +0.7 1.6 hypothetical protein compare
EX31_RS14635 +0.7 1.7 DedA family protein compare
EX31_RS09440 +0.7 2.3 D-cysteine desulfhydrase compare
EX31_RS13975 +0.7 2.2 EAL domain-containing protein compare
EX31_RS01315 +0.7 1.7 Na/Pi cotransporter family protein compare
EX31_RS23935 +0.7 2.7 ABC transporter substrate-binding protein compare
EX31_RS06905 +0.7 1.7 MarR family transcriptional regulator compare
EX31_RS24570 +0.7 2.1 high frequency lysogenization protein HflD compare
EX31_RS23560 +0.7 1.8 phosphate starvation-inducible protein compare
EX31_RS18805 +0.7 2.0 LysR family transcriptional regulator compare
EX31_RS09380 +0.7 2.5 putative cation transport regulator ChaB compare
EX31_RS06955 +0.7 1.2 hypothetical protein compare
EX31_RS23885 +0.7 1.0 DUF1471 domain-containing protein compare
EX31_RS16605 +0.7 2.1 iron permease compare
EX31_RS02540 +0.7 1.1 helix-turn-helix transcriptional regulator compare
EX31_RS05880 +0.7 1.7 DNA-3-methyladenine glycosylase I compare
EX31_RS10880 +0.7 2.4 glycerol dehydrogenase compare
EX31_RS22585 +0.7 2.4 NfeD family protein compare
EX31_RS01265 +0.7 1.1 GNAT family N-acetyltransferase compare
EX31_RS22240 +0.7 3.9 trigger factor compare
EX31_RS09795 +0.7 2.0 autoinducer 2 ABC transporter permease LsrC compare
EX31_RS24385 +0.7 1.9 dihydroorotase compare
EX31_RS09730 +0.7 1.6 sugar ABC transporter substrate-binding protein compare
EX31_RS11340 +0.7 3.1 flagellar biosynthesis protein FlhA compare
EX31_RS11345 +0.7 2.3 flagellar type III secretion system protein FlhB compare
EX31_RS09960 +0.7 2.3 glutamine amidotransferase compare
EX31_RS08385 +0.7 4.3 PTS trehalose transporter subunit IIBC compare
EX31_RS16955 +0.7 1.8 ABC transporter ATP-binding protein compare
EX31_RS18095 +0.7 3.1 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS11355 +0.7 0.9 chemotaxis protein CheY compare
EX31_RS02670 +0.7 1.1 YqgE/AlgH family protein compare
EX31_RS10320 +0.7 2.6 galactonate dehydratase compare
EX31_RS25060 +0.7 1.7 DUF2767 family protein compare
EX31_RS09285 +0.7 1.0 hypothetical protein compare
EX31_RS06355 +0.7 2.6 MFS transporter compare
EX31_RS18325 +0.7 1.1 baseplate assembly protein compare
EX31_RS09975 +0.7 2.2 tryptophan synthase subunit beta compare
EX31_RS23755 +0.7 0.9 molybdopterin synthase sulfur carrier subunit compare
EX31_RS24305 +0.7 2.1 VOC family protein compare
EX31_RS06830 +0.7 1.9 ABC transporter substrate-binding protein compare
EX31_RS15165 +0.7 2.6 tyrosine recombinase XerC compare
EX31_RS11320 +0.7 2.3 flagellar basal body P-ring formation protein FlgA compare
EX31_RS16900 +0.7 2.1 sugar phosphate isomerase/epimerase compare
EX31_RS03860 +0.7 1.6 FKBP-type peptidyl-prolyl cis-trans isomerase compare
EX31_RS22435 +0.7 2.4 Hha toxicity modulator TomB compare
EX31_RS09220 +0.7 0.8 MurR/RpiR family transcriptional regulator compare
EX31_RS06995 +0.7 2.4 hypothetical protein compare
EX31_RS19900 +0.7 2.5 formate hydrogenlyase regulator HycA compare
EX31_RS11100 +0.7 1.7 oxidoreductase compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source NLDM_metabolites in Rahnella sp. WP5

For carbon source NLDM_metabolites across organisms