Experiment set2IT085 for Pantoea sp. MT58

Compare to:

Manganese (II) chloride tetrahydrate 50 uM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_09580 -5.6 -3.9 FNR family transcription factor compare
IAI47_15635 -5.2 -4.1 RNA polymerase-binding protein DksA compare
IAI47_13695 -4.8 -1.5 colicin uptake protein TolR compare
IAI47_00895 -4.6 -23.4 phosphoenolpyruvate carboxylase compare
IAI47_09190 -4.4 -15.4 anthranilate synthase component 1 compare
IAI47_21880 -4.2 -1.3 ParA family protein compare
IAI47_07165 -4.2 -2.9 exodeoxyribonuclease I compare
IAI47_17220 -4.1 -27.3 glutamate synthase large subunit compare
IAI47_16350 -4.1 -12.0 phosphoserine phosphatase compare
IAI47_16390 -4.1 -1.2 tRNA-Leu compare
IAI47_09180 -3.9 -13.4 anthranilate phosphoribosyltransferase compare
IAI47_12885 -3.9 -13.0 pyruvate formate lyase 1-activating protein compare
IAI47_00780 -3.8 -2.6 6-phosphofructokinase compare
IAI47_07060 -3.8 -11.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_17965 -3.7 -13.2 glucose-6-phosphate isomerase compare
IAI47_07070 -3.7 -8.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_14355 -3.7 -12.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_04120 -3.6 -19.9 GTP diphosphokinase compare
IAI47_00870 -3.6 -1.6 50S ribosomal protein L31 compare
IAI47_15970 -3.5 -3.9 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_06320 -3.5 -9.8 phosphate acetyltransferase compare
IAI47_00460 -3.5 -2.4 glutamate--ammonia ligase compare
IAI47_01030 -3.5 -15.1 branched-chain amino acid transaminase compare
IAI47_03860 -3.4 -11.7 diaminopimelate decarboxylase compare
IAI47_17225 -3.4 -16.3 sulfite reductase subunit alpha compare
IAI47_11450 -3.3 -8.9 ankyrin repeat domain-containing protein compare
IAI47_07080 -3.3 -12.3 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_16080 -3.3 -8.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_18830 -3.3 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_13770 -3.3 -13.7 citrate synthase compare
IAI47_09240 -3.2 -2.2 HTH-type transcriptional regulator CysB compare
IAI47_07085 -3.2 -11.8 histidinol-phosphate transaminase compare
IAI47_09185 -3.2 -5.7 glutamine amidotransferase compare
IAI47_16830 -3.2 -12.3 ornithine carbamoyltransferase compare
IAI47_18045 -3.2 -9.6 phosphoribosylamine--glycine ligase compare
IAI47_09170 -3.1 -14.6 tryptophan synthase subunit beta compare
IAI47_14945 -3.1 -3.7 pyrroline-5-carboxylate reductase compare
IAI47_09165 -3.1 -9.9 tryptophan synthase subunit alpha compare
IAI47_07075 -3.1 -9.9 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_16115 -3.1 -17.1 carbamoyl-phosphate synthase large subunit compare
IAI47_16205 -3.0 -6.8 threonine synthase compare
IAI47_00910 -3.0 -9.1 acetylglutamate kinase compare
IAI47_00915 -3.0 -12.7 argininosuccinate synthase compare
IAI47_15120 -3.0 -8.1 glutamate 5-kinase compare
IAI47_12880 -3.0 -16.5 formate C-acetyltransferase compare
IAI47_07090 -2.9 -9.2 histidinol dehydrogenase compare
IAI47_01050 -2.9 -14.1 ketol-acid reductoisomerase compare
IAI47_15115 -2.9 -11.8 glutamate-5-semialdehyde dehydrogenase compare
IAI47_06275 -2.9 -15.6 amidophosphoribosyltransferase compare
IAI47_04930 -2.9 -15.8 phosphoribosylformylglycinamidine synthase compare
IAI47_04895 -2.9 -4.2 pyridoxine 5'-phosphate synthase compare
IAI47_05425 -2.9 -6.4 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_09305 -2.9 -5.1 cyclic di-GMP phosphodiesterase compare
IAI47_12915 -2.9 -9.8 leucine-responsive transcriptional regulator Lrp compare
IAI47_09055 -2.8 -13.2 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_13180 -2.8 -6.9 manganese-binding transcriptional regulator MntR compare
IAI47_12215 -2.8 -10.8 dihydroorotase compare
IAI47_00890 -2.8 -9.0 methylenetetrahydrofolate reductase compare
IAI47_09175 -2.8 -10.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_00515 -2.8 -2.7 DNA-directed RNA polymerase subunit omega compare
IAI47_17185 -2.8 -8.3 RNA polymerase factor sigma-54 compare
IAI47_16120 -2.8 -8.5 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_00920 -2.8 -12.9 argininosuccinate lyase compare
IAI47_00905 -2.7 -9.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_13900 -2.7 -12.7 asparagine synthase B compare
IAI47_07095 -2.7 -8.3 ATP phosphoribosyltransferase compare
IAI47_06235 -2.7 -7.4 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_00880 -2.7 -11.4 cystathionine gamma-synthase compare
IAI47_05180 -2.7 -10.8 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_10520 -2.7 -3.5 pyridoxamine 5'-phosphate oxidase compare
IAI47_06980 -2.7 -4.2 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_03975 -2.6 -10.6 amino-acid N-acetyltransferase compare
IAI47_08085 -2.6 -5.5 helix-turn-helix domain-containing protein compare
IAI47_18040 -2.6 -12.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_12705 -2.5 -10.0 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_03725 -2.5 -7.2 phosphoglycerate dehydrogenase compare
IAI47_01035 -2.4 -13.3 dihydroxy-acid dehydratase compare
IAI47_00465 -2.4 -3.7 ribosome-dependent GTPase TypA compare
IAI47_18015 -2.3 -10.6 homoserine O-succinyltransferase compare
IAI47_15110 -2.3 -6.5 chromophore lyase compare
IAI47_16010 -2.3 -10.3 3-isopropylmalate dehydratase large subunit compare
IAI47_13765 -2.3 -2.6 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_16210 -2.3 -8.3 homoserine kinase compare
IAI47_07065 -2.3 -7.3 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_05440 -2.2 -9.2 cysteine synthase A compare
IAI47_16215 -2.2 -12.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_06325 -2.2 -6.2 acetate kinase compare
IAI47_13685 -2.2 -2.3 Tol-Pal system protein TolB compare
IAI47_16000 -2.2 -12.0 2-isopropylmalate synthase compare
IAI47_12865 -2.2 -9.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_14325 -2.2 -1.8 ribosome-associated protein YbcJ compare
IAI47_13950 -2.2 -1.5 PhoH family protein compare
IAI47_00455 -2.2 -7.6 nitrogen regulation protein NR(II) compare
IAI47_09040 -2.1 -3.6 NAD-dependent epimerase compare
IAI47_16860 -2.1 -9.0 aspartate carbamoyltransferase compare
IAI47_11415 -2.1 -1.7 hypothetical protein compare
IAI47_09275 -2.1 -6.0 orotidine-5'-phosphate decarboxylase compare
IAI47_13495 -2.1 -5.5 GTP 3',8-cyclase MoaA compare
IAI47_09010 -2.1 -5.5 formyltetrahydrofolate deformylase compare
IAI47_13485 -2.1 -5.1 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_14350 -2.0 -6.1 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_08440 -2.0 -1.9 crossover junction endodeoxyribonuclease RuvC compare
IAI47_01040 -2.0 -6.6 threonine ammonia-lyase, biosynthetic compare
IAI47_00445 -2.0 -7.7 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_13935 -1.9 -1.5 tRNA-Gln compare
IAI47_16005 -1.9 -7.3 3-isopropylmalate dehydrogenase compare
IAI47_00600 -1.9 -6.9 orotate phosphoribosyltransferase compare
IAI47_06385 -1.9 -5.0 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_12030 -1.9 -9.5 PTS glucose transporter subunit IIBC compare
IAI47_17120 -1.8 -2.3 BolA family iron metabolism protein IbaG compare
IAI47_05275 -1.8 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_21765 -1.8 -1.4 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_15540 -1.8 -8.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_02695 -1.8 -6.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_04260 -1.8 -9.7 nitrate reductase subunit beta compare
IAI47_16190 -1.7 -3.5 molybdopterin adenylyltransferase compare
IAI47_12645 -1.7 -7.7 porin OmpA compare
IAI47_04835 -1.7 -5.7 ATP-dependent RNA helicase SrmB compare
IAI47_04255 -1.7 -11.7 nitrate reductase subunit alpha compare
IAI47_04410 -1.7 -8.9 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_04270 -1.6 -6.5 respiratory nitrate reductase subunit gamma compare
IAI47_01955 -1.6 -8.4 aspartate aminotransferase family protein compare
IAI47_17255 -1.6 -2.0 DUF1043 family protein compare
IAI47_04265 -1.6 -6.1 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_11515 -1.6 -1.5 hypothetical protein compare
IAI47_04870 -1.6 -4.2 elongation factor 4 compare
IAI47_17005 -1.6 -6.0 polyribonucleotide nucleotidyltransferase compare
IAI47_18530 -1.6 -2.9 thioredoxin TrxA compare
IAI47_14470 -1.5 -1.9 YbaB/EbfC family nucleoid-associated protein compare
IAI47_06245 -1.5 -2.8 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_12875 -1.5 -5.4 formate transporter FocA compare
IAI47_00410 -1.4 -6.7 molybdenum cofactor guanylyltransferase MobA compare
IAI47_04160 -1.4 -6.6 phosphoadenylyl-sulfate reductase compare
IAI47_04155 -1.4 -7.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_02400 -1.4 -1.4 YhdT family protein compare
IAI47_17900 -1.4 -1.5 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_13145 -1.4 -3.8 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_15485 -1.4 -0.9 molecular chaperone Skp compare
IAI47_02090 -1.4 -3.1 elongation factor Tu compare
IAI47_18435 -1.4 -8.6 uroporphyrinogen-III C-methyltransferase compare
IAI47_16870 -1.3 -3.6 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_11375 -1.3 -1.1 hypothetical protein compare
IAI47_05090 -1.3 -2.1 hypothetical protein compare
IAI47_07450 -1.3 -2.7 winged helix-turn-helix domain-containing protein compare
IAI47_13310 -1.3 -4.0 MerR family transcriptional regulator compare
IAI47_17910 -1.3 -1.8 chorismate lyase compare
IAI47_10925 -1.3 -2.1 EAL domain-containing protein compare
IAI47_16095 -1.2 -3.2 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_03615 -1.2 -4.8 glutathione synthase compare
IAI47_14730 -1.2 -0.8 exodeoxyribonuclease VII small subunit compare
IAI47_13140 -1.2 -5.0 molybdopterin molybdotransferase MoeA compare
IAI47_09210 -1.2 -5.1 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_00450 -1.2 -5.8 nitrogen regulation protein NR(I) compare
IAI47_15595 -1.2 -0.8 Fe(3+)-hydroxamate ABC transporter permease FhuB compare
IAI47_18410 -1.2 -2.6 diaminopimelate epimerase compare
IAI47_03195 -1.2 -1.8 cell division protein FtsP compare
IAI47_11655 -1.2 -1.2 hypothetical protein compare
IAI47_01000 -1.2 -7.8 HTH-type transcriptional regulator HdfR compare
IAI47_11935 -1.2 -8.1 two-component system sensor histidine kinase PhoQ compare
IAI47_08445 -1.1 -1.4 Holliday junction branch migration protein RuvA compare
IAI47_01005 -1.1 -6.6 DUF413 domain-containing protein compare
IAI47_04150 -1.1 -5.9 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_10320 -1.1 -0.8 Rrf2 family transcriptional regulator compare
IAI47_18145 -1.1 -1.2 elongation factor Tu compare
IAI47_07175 -1.1 -5.4 FUSC family protein compare
IAI47_03855 -1.1 -3.4 LysR family transcriptional regulator compare
IAI47_03235 -1.1 -3.3 tol-pal system-associated acyl-CoA thioesterase compare
IAI47_10890 -1.1 -7.8 FAD-binding oxidoreductase compare
IAI47_00735 -1.1 -1.0 protein-export chaperone SecB compare
IAI47_12410 -1.0 -3.0 MarR family transcriptional regulator compare
IAI47_02040 -1.0 -3.8 peptidylprolyl isomerase compare
IAI47_06040 -1.0 -2.7 DNA polymerase V compare
IAI47_16015 -1.0 -2.4 3-isopropylmalate dehydratase small subunit compare
IAI47_18310 -1.0 -6.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
IAI47_18055 -1.0 -3.0 DNA-binding protein HU-alpha compare
IAI47_05520 -1.0 -1.0 tRNA-Ala compare
IAI47_11475 -1.0 -1.0 hypothetical protein compare
IAI47_06410 -1.0 -3.5 NADH-quinone oxidoreductase subunit L compare
IAI47_03375 -1.0 -4.7 peptide chain release factor 3 compare
IAI47_21450 -1.0 -0.9 general stress protein compare
IAI47_18315 -1.0 -3.6 HTH-type transcriptional regulator MetR compare
IAI47_11880 -0.9 -1.3 hypothetical protein compare
IAI47_16220 -0.9 -2.8 thr operon leader peptide compare
IAI47_06405 -0.9 -1.7 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_06365 -0.9 -2.3 NADH-quinone oxidoreductase subunit B compare
IAI47_19000 -0.9 -3.3 DHCW motif cupin fold protein compare
IAI47_20680 -0.9 -2.9 hypothetical protein compare
IAI47_00900 -0.9 -4.8 acetylornithine deacetylase compare
IAI47_12275 -0.9 -6.7 glucans biosynthesis glucosyltransferase MdoH compare
IAI47_06415 -0.9 -2.6 NADH-quinone oxidoreductase subunit M compare
IAI47_00940 -0.9 -4.2 HTH-type transcriptional repressor FabR compare
IAI47_19945 -0.9 -0.7 hypothetical protein compare
IAI47_08105 -0.9 -2.1 DinI family protein compare
IAI47_15305 -0.9 -2.3 allantoin racemase compare
IAI47_06370 -0.9 -2.5 NADH-quinone oxidoreductase subunit C/D compare
IAI47_09395 -0.9 -1.6 phage shock protein PspA compare
IAI47_10790 -0.9 -2.5 YnhF family membrane protein compare
IAI47_19030 -0.9 -2.1 hypothetical protein compare
IAI47_12375 -0.9 -1.2 acyl carrier protein compare
IAI47_10755 -0.9 -1.3 DUF1289 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Manganese (II) chloride tetrahydrate across organisms