Experiment set2IT085 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Serine nitrogen source

200 most important genes:

  gene name fitness t score description  
RR42_RS18305 -6.6 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS05860 -6.5 -4.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14365 -6.1 -4.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS18300 -5.7 -5.5 anthranilate synthase subunit II compare
RR42_RS19005 -5.6 -5.4 3-dehydroquinate synthase compare
RR42_RS14400 -5.6 -5.4 isopropylmalate isomerase compare
RR42_RS06485 -4.9 -9.9 chorismate synthase compare
RR42_RS15905 -4.7 -13.6 phosphoenolpyruvate carboxylase compare
RR42_RS16265 -4.5 -5.0 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS14390 -4.5 -3.6 3-isopropylmalate dehydratase compare
RR42_RS04475 -4.4 -9.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS19045 -4.3 -1.9 frataxin compare
RR42_RS01160 -4.1 -10.0 homoserine O-acetyltransferase compare
RR42_RS14385 -4.1 -6.5 3-isopropylmalate dehydrogenase compare
RR42_RS18990 -4.0 -19.1 glutamate synthase compare
RR42_RS12040 -3.9 -14.3 MFS transporter compare
RR42_RS18295 -3.9 -11.7 anthranilate synthase component I compare
RR42_RS12980 -3.8 -6.4 chemotaxis protein CheY compare
RR42_RS20080 -3.6 -11.7 L-serine ammonia-lyase (EC 4.3.1.17) (from data) conserved
RR42_RS33255 -3.5 -5.0 protein-tyrosine phosphatase compare
RR42_RS12985 -3.5 -8.5 histidine kinase compare
RR42_RS11790 -3.4 -7.0 phosphoenolpyruvate synthase compare
RR42_RS33260 -3.4 -7.1 multidrug MFS transporter compare
RR42_RS11885 -3.3 -11.4 (protein-PII) uridylyltransferase compare
RR42_RS01845 -3.3 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS16965 -3.3 -6.3 ABC transporter compare
RR42_RS16960 -3.3 -7.7 ABC transporter ATP-binding protein compare
RR42_RS33250 -3.1 -9.5 tyrosine protein kinase compare
RR42_RS14360 -3.0 -1.7 tryptophan synthase subunit alpha compare
RR42_RS02085 -3.0 -7.6 RNA polymerase subunit sigma-54 compare
RR42_RS14320 -3.0 -5.0 O-succinylhomoserine sulfhydrylase compare
RR42_RS04460 -3.0 -6.5 chorismate mutase compare
RR42_RS21220 -3.0 -2.8 iron transporter FeoB compare
RR42_RS19065 -2.9 -10.7 transcriptional regulator compare
RR42_RS13800 -2.9 -7.0 formyltetrahydrofolate deformylase compare
RR42_RS16975 -2.9 -9.5 ABC transporter permease compare
RR42_RS30655 -2.8 -8.0 LysR family transcriptional regulator compare
RR42_RS16250 -2.8 -7.6 sulfate adenylyltransferase compare
RR42_RS16970 -2.8 -11.9 ABC transporter ATP-binding protein compare
RR42_RS16255 -2.8 -10.2 sulfate adenylyltransferase compare
RR42_RS16280 -2.8 -5.2 transcriptional regulator compare
RR42_RS02500 -2.7 -3.6 TetR family transcriptional regulator compare
RR42_RS04535 -2.7 -5.4 cysteine synthase compare
RR42_RS12305 -2.7 -2.0 hypothetical protein compare
RR42_RS16245 -2.5 -5.2 uroporphyrin-III methyltransferase compare
RR42_RS26455 -2.5 -1.8 amino acid ABC transporter ATP-binding protein compare
RR42_RS30660 -2.5 -9.6 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS16270 -2.5 -10.4 sulfite reductase compare
RR42_RS18310 -2.5 -2.1 indole-3-glycerol-phosphate synthase compare
RR42_RS12050 -2.4 -7.1 DNA polymerase compare
RR42_RS15890 -2.3 -7.0 heme biosynthesis protein HemY compare
RR42_RS15015 -2.3 -1.7 exodeoxyribonuclease VII small subunit compare
RR42_RS33245 -2.3 -7.4 mannose-1-phosphate guanyltransferase compare
RR42_RS11795 -2.2 -1.6 PEP synthetase regulatory protein compare
RR42_RS16980 -2.2 -12.0 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS18985 -2.2 -4.2 glutamate synthase compare
RR42_RS15895 -2.2 -6.1 uroporphyrinogen III methyltransferase compare
RR42_RS33240 -2.2 -12.2 GDP-L-fucose synthase compare
RR42_RS33355 -2.1 -5.8 membrane protein compare
RR42_RS20205 -2.0 -3.5 chromosome partitioning protein compare
RR42_RS01385 -2.0 -2.8 5,10-methylenetetrahydrofolate reductase compare
RR42_RS02705 -1.9 -2.8 Holliday junction DNA helicase RuvA compare
RR42_RS06325 -1.9 -1.2 serine O-acetyltransferase compare
RR42_RS04895 -1.9 -9.6 serine/threonine protein phosphatase compare
RR42_RS15410 -1.9 -4.8 membrane protein compare
RR42_RS17105 -1.9 -9.3 Clp protease ClpX compare
RR42_RS33235 -1.8 -6.8 GDP-mannose 4,6-dehydratase compare
RR42_RS14790 -1.7 -6.4 cobalamin biosynthesis protein CobD compare
RR42_RS26900 -1.7 -3.3 enoyl-CoA hydratase compare
RR42_RS19010 -1.7 -5.1 shikimate kinase compare
RR42_RS02250 -1.7 -3.6 GntR family transcriptional regulator compare
RR42_RS17055 -1.6 -7.3 LuxR family transcriptional regulator compare
RR42_RS20775 -1.6 -1.3 hypothetical protein compare
RR42_RS16220 -1.6 -1.6 DNA polymerase III subunit chi compare
RR42_RS18855 -1.6 -3.4 preprotein translocase compare
RR42_RS25785 -1.6 -3.3 TetR family transcriptional regulator compare
RR42_RS02045 -1.5 -9.6 GTPase compare
RR42_RS07605 -1.5 -4.8 poly-beta-hydroxybutyrate polymerase compare
RR42_RS36400 -1.5 -1.5 hypothetical protein compare
RR42_RS18840 -1.5 -4.4 2-alkenal reductase compare
RR42_RS33210 -1.5 -4.0 teichoic acid biosynthesis protein compare
RR42_RS17645 -1.5 -5.6 shikimate dehydrogenase compare
RR42_RS21295 -1.5 -3.7 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS17060 -1.4 -10.2 histidine kinase compare
RR42_RS35240 -1.4 -1.9 acyl-CoA dehydrogenase compare
RR42_RS20060 -1.4 -4.3 glycine cleavage system protein T compare
RR42_RS18425 -1.4 -1.5 hypothetical protein compare
RR42_RS14585 -1.4 -4.2 L-PSP family endoribonuclease compare
RR42_RS22230 -1.4 -1.4 hypothetical protein compare
RR42_RS14965 -1.4 -2.8 hypothetical protein compare
RR42_RS30410 -1.4 -2.4 hypothetical protein compare
RR42_RS18850 -1.3 -1.7 preprotein translocase subunit TatC compare
RR42_RS37240 -1.3 -1.3 hypothetical protein compare
RR42_RS14845 -1.3 -2.6 MarR family transcriptional regulator compare
RR42_RS24605 -1.3 -6.7 TetR family transcriptional regulator compare
RR42_RS34520 -1.3 -1.1 transposase compare
RR42_RS01775 -1.3 -6.0 glutamate--cysteine ligase compare
RR42_RS37115 -1.3 -2.1 hypothetical protein compare
RR42_RS13935 -1.3 -1.8 hemin transporter compare
RR42_RS20070 -1.3 -6.4 glycine dehydrogenase compare
RR42_RS19410 -1.3 -4.7 GntR family transcriptional regulator compare
RR42_RS17390 -1.2 -5.4 ATP-dependent DNA helicase RecG compare
RR42_RS14080 -1.2 -7.2 RNA polymerase sigma factor RpoE compare
RR42_RS16260 -1.2 -0.9 phosphoadenosine phosphosulfate reductase compare
RR42_RS20300 -1.2 -2.7 MerR family transcriptional regulator compare
RR42_RS36105 -1.2 -3.1 MarR family transcriptional regulator compare
RR42_RS15415 -1.2 -2.4 membrane protein compare
RR42_RS12185 -1.2 -1.5 LysR family transcriptional regulator compare
RR42_RS01760 -1.2 -7.5 ammonia channel protein conserved
RR42_RS13910 -1.2 -4.3 glutamate racemase compare
RR42_RS15460 -1.2 -4.5 translocation protein TolB compare
RR42_RS05990 -1.2 -5.6 aromatic amino acid aminotransferase compare
RR42_RS16275 -1.1 -2.8 membrane protein compare
RR42_RS06630 -1.1 -2.1 integration host factor subunit alpha compare
RR42_RS21300 -1.1 -4.7 GntR family transcriptional regulator compare
RR42_RS19445 -1.1 -4.1 TetR family transcriptional regulator compare
RR42_RS13015 -1.1 -4.5 fatty acid hydroxylase compare
RR42_RS34680 -1.1 -1.6 short-chain dehydrogenase compare
RR42_RS34650 -1.1 -4.6 LacI family transcriptional regulator compare
RR42_RS15475 -1.1 -4.7 protein tolQ compare
RR42_RS27700 -1.1 -2.1 hypothetical protein compare
RR42_RS21720 -1.0 -1.1 acetoin catabolism protein X compare
RR42_RS12015 -1.0 -2.5 dihydrolipoamide acyltransferase compare
RR42_RS15455 -1.0 -4.0 membrane protein compare
RR42_RS27645 -1.0 -1.5 hypothetical protein compare
RR42_RS19090 -1.0 -1.6 cytochrome C compare
RR42_RS00860 -1.0 -3.2 MerR family transcriptional regulator compare
RR42_RS06585 -1.0 -7.9 GTP pyrophosphokinase compare
RR42_RS07330 -1.0 -4.1 histidine utilization repressor compare
RR42_RS26590 -1.0 -1.6 hypothetical protein compare
RR42_RS13195 -1.0 -4.4 protein-L-isoaspartate O-methyltransferase compare
RR42_RS20575 -1.0 -1.2 hypothetical protein compare
RR42_RS07565 -1.0 -4.9 transcription accessory protein compare
RR42_RS08365 -0.9 -4.9 hypothetical protein compare
RR42_RS35875 -0.9 -4.9 UDP-galactose-4-epimerase compare
RR42_RS01290 -0.9 -3.1 thiamine biosynthesis protein ThiC compare
RR42_RS19695 -0.9 -1.6 cytochrome C protein compare
RR42_RS15080 -0.9 -1.7 GntR family transcriptional regulator compare
RR42_RS05695 -0.9 -4.7 pyridoxal-5'-phosphate-dependent protein subunit beta compare
RR42_RS13640 -0.9 -2.5 MarR family transcriptional regulator compare
RR42_RS01505 -0.9 -1.5 tRNA-Cys compare
RR42_RS34060 -0.9 -1.5 alpha/beta hydrolase compare
RR42_RS00790 -0.9 -6.3 chemotaxis protein CheY compare
RR42_RS02320 -0.9 -2.0 trehalose phosphatase compare
RR42_RS14885 -0.9 -1.9 DNA-directed RNA polymerase sigma-70 factor compare
RR42_RS21285 -0.9 -4.3 L-lactate dehydrogenase, LutB subunit (from data) compare
RR42_RS23565 -0.9 -0.9 flagellar motor switch protein G compare
RR42_RS12550 -0.9 -3.3 hypothetical protein compare
RR42_RS05920 -0.9 -2.9 HrcA family transcriptional regulator compare
RR42_RS28695 -0.9 -1.9 hypothetical protein compare
RR42_RS21280 -0.9 -4.9 L-lactate permease compare
RR42_RS21450 -0.9 -2.3 hypothetical protein compare
RR42_RS19700 -0.9 -3.0 cytochrome C compare
RR42_RS33215 -0.9 -5.6 transferase compare
RR42_RS31530 -0.9 -2.1 histidine kinase compare
RR42_RS03080 -0.9 -2.0 recombinase RecA compare
RR42_RS35380 -0.9 -3.1 hypothetical protein compare
RR42_RS05500 -0.9 -1.0 preprotein translocase subunit SecG compare
RR42_RS26370 -0.9 -1.9 tautomerase compare
RR42_RS10465 -0.9 -1.3 hypothetical protein compare
RR42_RS24040 -0.9 -3.1 hypothetical protein compare
RR42_RS12580 -0.8 -2.2 phosphate transport regulator compare
RR42_RS06580 -0.8 -2.3 aminoacrylate peracid reductase compare
RR42_RS01380 -0.8 -1.2 membrane protein compare
RR42_RS22760 -0.8 -3.1 GntR family transcriptional regulator compare
RR42_RS18815 -0.8 -4.4 cytochrome C compare
RR42_RS30640 -0.8 -4.4 DNA mismatch repair protein MutT compare
RR42_RS33575 -0.8 -1.7 hypothetical protein compare
RR42_RS01755 -0.8 -2.7 nitrogen regulatory protein P-II 1 compare
RR42_RS00410 -0.8 -3.2 transcriptional regulator compare
RR42_RS11770 -0.8 -1.2 cyclase compare
RR42_RS21290 -0.8 -4.0 L-lactate dehydrogenase, LutC subunit (from data) compare
RR42_RS28745 -0.8 -1.8 hypothetical protein compare
RR42_RS35370 -0.8 -5.0 copper oxidase compare
RR42_RS06015 -0.8 -5.2 recombinase compare
RR42_RS14055 -0.8 -1.4 elongation factor 4 compare
RR42_RS01500 -0.8 -2.7 hypothetical protein compare
RR42_RS01920 -0.8 -1.6 protoheme IX farnesyltransferase compare
RR42_RS06875 -0.8 -1.5 hypothetical protein compare
RR42_RS29785 -0.8 -1.6 hypothetical protein compare
RR42_RS10520 -0.8 -1.6 3-oxoacyl-ACP reductase compare
RR42_RS29525 -0.8 -1.8 hypothetical protein compare
RR42_RS01955 -0.8 -5.3 nitrate transporter compare
RR42_RS21820 -0.8 -2.3 GntR family transcriptional regulator compare
RR42_RS23920 -0.8 -2.1 hypothetical protein compare
RR42_RS00545 -0.8 -2.1 transglutaminase compare
RR42_RS21955 -0.8 -0.9 hypothetical protein compare
RR42_RS13190 -0.8 -3.0 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS21435 -0.8 -2.3 hypothetical protein compare
RR42_RS06700 -0.8 -1.9 hypothetical protein compare
RR42_RS02860 -0.8 -1.5 hypothetical protein compare
RR42_RS28490 -0.8 -2.2 hypothetical protein compare
RR42_RS08630 -0.8 -1.2 head completion/stabilization protein compare
RR42_RS12055 -0.8 -2.9 acyltransferase compare
RR42_RS02440 -0.8 -1.9 membrane protein compare
RR42_RS16950 -0.8 -2.4 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
RR42_RS32740 -0.8 -0.8 enoyl-CoA hydratase compare
RR42_RS23985 -0.8 -3.2 hypothetical protein compare
RR42_RS04145 -0.8 -1.0 peptidase A24 compare
RR42_RS21040 -0.8 -0.8 hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For nitrogen source L-Serine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Serine across organisms