Experiment set2IT084 for Pseudomonas fluorescens FW300-N2C3

Compare to:

D-Sorbitol carbon source

200 most important genes:

  gene name fitness t score description  
AO356_14440 -6.3 -4.4 indole-3-glycerol-phosphate synthase compare
AO356_08635 -6.0 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
AO356_14435 -5.9 -4.1 anthranilate phosphoribosyltransferase compare
AO356_13405 -5.4 -10.3 methionine biosynthesis protein MetW compare
AO356_16175 -5.4 -3.7 acetolactate synthase 3 regulatory subunit compare
AO356_13085 -5.4 -9.7 N-acetylglutamate synthase compare
AO356_12525 -5.4 -9.0 acetylglutamate kinase compare
AO356_13410 -5.3 -10.7 homoserine O-acetyltransferase compare
AO356_22200 -5.2 -8.6 sirohydrochlorin ferrochelatase compare
AO356_10915 -5.2 -11.0 tryptophan synthase subunit beta compare
AO356_18325 -5.1 -12.8 argininosuccinate synthase compare
AO356_21405 -5.1 -5.2 3-isopropylmalate dehydratase compare
AO356_19090 -5.1 -3.5 phosphoribosylaminoimidazole synthetase compare
AO356_14420 -5.0 -15.2 anthranilate synthase compare
AO356_00035 -5.0 -11.7 Fructokinase (EC 2.7.1.4) (from data) conserved
AO356_06970 -5.0 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_18025 -4.9 -3.4 ATP-dependent DNA helicase RuvB compare
AO356_06965 -4.9 -8.8 histidinol dehydrogenase compare
AO356_09375 -4.8 -24.2 glutamate synthase compare
AO356_09815 -4.7 -7.9 imidazoleglycerol-phosphate dehydratase compare
AO356_18275 -4.7 -13.8 ornithine carbamoyltransferase compare
AO356_00555 -4.7 -12.0 sulfite reductase compare
AO356_08735 -4.6 -14.0 phosphoserine phosphatase compare
AO356_06550 -4.6 -13.9 2-isopropylmalate synthase compare
AO356_16180 -4.6 -15.4 ketol-acid reductoisomerase compare
AO356_21465 -4.6 -5.4 amidophosphoribosyltransferase compare
AO356_21415 -4.6 -12.4 3-isopropylmalate dehydrogenase compare
AO356_10910 -4.5 -10.6 tryptophan synthase subunit alpha compare
AO356_21400 -4.5 -8.1 isopropylmalate isomerase compare
AO356_09370 -4.5 -13.6 glutamate synthase compare
AO356_12520 -4.5 -3.1 orotate phosphoribosyltransferase compare
AO356_00020 -4.5 -10.0 ABC transporter for D-Sorbitol, permease component 2 (from data) conserved
AO356_09520 -4.5 -6.1 phosphoribosyl-AMP cyclohydrolase compare
AO356_09810 -4.5 -6.1 imidazole glycerol phosphate synthase subunit HisH compare
AO356_13605 -4.3 -7.8 5,10-methylenetetrahydrofolate reductase compare
AO356_09525 -4.3 -7.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_09800 -4.3 -6.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_21440 -4.3 -10.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_14430 -4.1 -7.2 anthranilate synthase compare
AO356_16170 -4.1 -14.0 acetolactate synthase 3 catalytic subunit compare
AO356_05160 -4.1 -8.4 glucose-6-phosphate dehydrogenase compare
AO356_00030 -3.9 -5.4 AraC family transcriptional regulator conserved
AO356_21470 -3.9 -7.0 O-succinylhomoserine sulfhydrylase compare
AO356_07005 -3.8 -3.7 ABC transporter ATP-binding protein compare
AO356_16075 -3.8 -5.2 Fis family transcriptional regulator compare
AO356_10340 -3.8 -15.3 phosphoserine phosphatase compare
AO356_01750 -3.7 -4.4 ATP-dependent Clp protease proteolytic subunit compare
AO356_00010 -3.7 -10.2 ABC transporter for D-Sorbitol, ATPase component (from data) conserved
AO356_19795 -3.6 -3.5 glycerol-3-phosphate dehydrogenase compare
AO356_12020 -3.6 -14.6 pyruvate carboxylase subunit A compare
AO356_00025 -3.6 -14.1 ABC transporter for D-Sorbitol, periplasmic substrate-binding component (from data) conserved
AO356_00015 -3.6 -10.9 ABC transporter for D-Sorbitol, permease component 1 (from data) conserved
AO356_13250 -3.6 -9.2 dihydroxy-acid dehydratase compare
AO356_16050 -3.5 -2.4 glucose-6-phosphate isomerase compare
AO356_10300 -3.5 -4.8 3-phosphoglycerate dehydrogenase compare
AO356_09795 -3.5 -2.4 imidazole glycerol phosphate synthase subunit HisF compare
AO356_12780 -3.4 -7.2 argininosuccinate lyase compare
AO356_00560 -3.4 -3.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_17520 -3.4 -2.3 phosphoribosylformylglycinamidine synthase compare
AO356_12025 -3.4 -12.6 pyruvate carboxylase subunit B compare
AO356_21330 -3.3 -9.6 aromatic amino acid aminotransferase compare
AO356_05225 -3.2 -7.7 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_27180 -3.1 -6.5 hypothetical protein compare
AO356_01745 -3.0 -6.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_07910 -3.0 -2.9 exodeoxyribonuclease V subunit alpha compare
AO356_12015 -3.0 -11.1 LysR family transcriptional regulator compare
AO356_07915 -3.0 -3.5 exodeoxyribonuclease V subunit beta compare
AO356_19045 -2.9 -12.6 chemotaxis protein CheY compare
AO356_20830 -2.9 -5.1 phosphoadenosine phosphosulfate reductase compare
AO356_11055 -2.9 -5.8 long-chain acyl-CoA thioester hydrolase compare
AO356_02175 -2.9 -10.7 transaldolase compare
AO356_15815 -2.8 -2.4 gamma-glutamyl kinase compare
AO356_27215 -2.7 -5.0 hypothetical protein compare
AO356_06960 -2.7 -7.9 histidinol-phosphate aminotransferase compare
AO356_00355 -2.6 -10.8 chemotaxis protein CheY compare
AO356_20175 -2.6 -3.0 3-oxoacyl-ACP synthase compare
AO356_12380 -2.5 -8.8 ATP-dependent DNA helicase RecG compare
AO356_05995 -2.5 -3.1 hypothetical protein compare
AO356_11315 -2.4 -2.3 shikimate dehydrogenase compare
AO356_15165 -2.4 -3.5 protein cII compare
AO356_06385 -2.3 -4.6 recombinase XerD compare
AO356_18730 -2.3 -10.1 arginine N-succinyltransferase compare
AO356_00880 -2.3 -3.3 integration host factor subunit alpha compare
AO356_19050 -2.2 -3.6 cysteine synthase compare
AO356_08905 -2.2 -3.0 glycosyl transferase compare
AO356_17950 -2.2 -9.9 histidine kinase compare
AO356_03800 -2.1 -3.2 histidine kinase compare
AO356_14135 -2.1 -13.3 biotin synthase compare
AO356_17830 -2.1 -6.0 pyruvate kinase compare
AO356_27210 -2.1 -8.4 hypothetical protein compare
AO356_27205 -2.1 -7.9 hypothetical protein compare
AO356_07480 -2.1 -3.6 carbamoyl phosphate synthase large subunit compare
AO356_10075 -2.1 -6.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_07390 -2.1 -2.6 polyribonucleotide nucleotidyltransferase compare
AO356_18020 -2.0 -4.2 ATP-dependent DNA helicase RuvA compare
AO356_05670 -2.0 -3.5 recombinase RecA compare
AO356_19085 -2.0 -7.9 phosphoribosylglycinamide formyltransferase compare
AO356_19520 -1.9 -4.3 isochorismatase compare
AO356_10920 -1.9 -6.5 LysR family transcriptional regulator compare
AO356_03180 -1.8 -4.9 CysB family transcriptional regulator compare
AO356_02315 -1.7 -4.8 DNA topoisomerase I compare
AO356_14295 -1.7 -2.3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_12005 -1.7 -9.9 transcriptional regulator compare
AO356_21125 -1.7 -4.9 cyclic peptide transporter compare
AO356_16870 -1.6 -7.8 benzoate transporter compare
AO356_07920 -1.6 -5.3 exodeoxyribonuclease V subunit gamma compare
AO356_10330 -1.6 -10.9 threonine dehydratase compare
AO356_18775 -1.6 -2.1 aspartate kinase compare
AO356_12725 -1.6 -4.8 recombinase XerC compare
AO356_24845 -1.6 -3.0 ATPase compare
AO356_16070 -1.5 -5.7 poly(A) polymerase compare
AO356_26455 -1.5 -2.9 hypothetical protein compare
AO356_08875 -1.5 -3.1 toluene tolerance protein compare
AO356_27250 -1.4 -4.2 hypothetical protein compare
AO356_02800 -1.4 -3.5 transporter compare
AO356_16665 -1.4 -8.5 sulfate adenylyltransferase compare
AO356_13700 -1.3 -3.8 hypothetical protein compare
AO356_21410 -1.3 -2.1 SAM-dependent methyltransferase compare
AO356_02190 -1.3 -5.7 hypothetical protein compare
AO356_06065 -1.3 -2.4 ArsC family transcriptional regulator compare
AO356_11680 -1.3 -1.8 chromosome partitioning protein ParB compare
AO356_17065 -1.3 -1.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_06990 -1.2 -3.7 toluene tolerance protein compare
AO356_19175 -1.2 -4.1 alpha-ribazole phosphatase compare
AO356_03725 -1.2 -3.1 histidine kinase compare
AO356_17075 -1.2 -2.4 cytochrome C compare
AO356_27230 -1.2 -3.1 hypothetical protein compare
AO356_16670 -1.2 -6.8 adenylylsulfate kinase compare
AO356_29420 -1.2 -3.4 1-aminocyclopropane-1-carboxylate deaminase compare
AO356_08235 -1.2 -5.7 histidine kinase compare
AO356_12375 -1.1 -7.1 histidine kinase compare
AO356_18735 -1.1 -3.0 arginine N-succinyltransferase compare
AO356_22825 -1.1 -1.2 transcriptional regulator compare
AO356_19420 -1.1 -1.9 septum formation inhibitor compare
AO356_16095 -1.1 -5.5 molecular chaperone DnaK compare
AO356_11025 -1.1 -3.1 transcriptional regulator PhoU compare
AO356_06050 -1.0 -7.2 protein-PII uridylyltransferase compare
AO356_27245 -1.0 -1.0 hypothetical protein compare
AO356_29755 -1.0 -2.4 hypothetical protein compare
AO356_03070 -1.0 -7.0 histidine kinase compare
AO356_06995 -1.0 -4.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_20785 -1.0 -1.6 hypothetical protein compare
AO356_12730 -1.0 -2.8 hypothetical protein compare
AO356_28105 -1.0 -3.1 LuxR family transcriptional regulator compare
AO356_11450 -1.0 -1.6 cytochrome C compare
AO356_08275 -0.9 -2.4 precorrin isomerase compare
AO356_28300 -0.9 -1.5 hypothetical protein compare
AO356_02250 -0.9 -5.3 pyridine nucleotide-disulfide oxidoreductase compare
AO356_17485 -0.9 -3.5 elongation factor 4 compare
AO356_12990 -0.9 -4.5 5-formyltetrahydrofolate cyclo-ligase compare
AO356_08280 -0.9 -3.2 oxidoreductase compare
AO356_09095 -0.9 -2.4 hypothetical protein compare
AO356_30345 -0.9 -3.7 IclR family transcriptional regulator compare
AO356_17985 -0.9 -3.6 cold-shock protein compare
AO356_07000 -0.9 -2.1 ABC transporter permease compare
AO356_11675 -0.9 -4.7 chromosome partitioning protein compare
AO356_09150 -0.9 -1.5 acyl carrier protein compare
AO356_08290 -0.9 -2.7 precorrin-6Y C5,15-methyltransferase compare
AO356_27685 -0.9 -2.6 ABC transporter ATP-binding protein compare
AO356_19180 -0.9 -3.8 cobalamin synthase compare
AO356_27760 -0.9 -2.4 LysR family transcriptional regulator compare
AO356_02465 -0.9 -1.6 carbonate dehydratase compare
AO356_19165 -0.8 -2.7 adenosylcobinamide kinase compare
AO356_19170 -0.8 -3.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO356_07495 -0.8 -2.7 molecular chaperone DnaJ compare
AO356_27170 -0.8 -2.1 XRE family transcriptional regulator compare
AO356_08300 -0.8 -3.1 cobalt-precorrin-6X reductase compare
AO356_25360 -0.8 -1.6 dimethylmenaquinone methyltransferase compare
AO356_03455 -0.8 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
AO356_21790 -0.8 -1.1 sulfonate ABC transporter ATP-binding protein compare
AO356_14540 -0.8 -1.5 biotin--protein ligase compare
AO356_08265 -0.8 -3.5 precorrin-3B C17-methyltransferase compare
AO356_18070 -0.8 -3.0 7-cyano-7-deazaguanine synthase compare
AO356_14155 -0.8 -4.2 dethiobiotin synthetase compare
AO356_01410 -0.8 -1.8 hypothetical protein compare
AO356_02290 -0.8 -2.0 TetR family transcriptional regulator compare
AO356_00530 -0.8 -2.8 precorrin-4 C11-methyltransferase compare
AO356_02070 -0.8 -2.2 phage tail protein compare
AO356_11465 -0.8 -4.6 DNA polymerase I compare
AO356_16150 -0.8 -6.7 penicillin-binding protein 1B compare
AO356_15295 -0.8 -2.5 nicotinate-nucleotide adenylyltransferase compare
AO356_01555 -0.8 -4.6 acyl-CoA dehydrogenase compare
AO356_19140 -0.8 -5.6 cobyrinic acid a,c-diamide synthase compare
AO356_12735 -0.8 -1.4 diaminopimelate epimerase compare
AO356_09730 -0.8 -3.2 nitrogen regulation protein NR(I) compare
AO356_30425 -0.8 -2.1 pyrroloquinoline quinone biosynthesis protein PqqE compare
AO356_13695 -0.8 -1.9 hypothetical protein compare
AO356_02830 -0.7 -4.7 transcriptional regulator compare
AO356_00505 -0.7 -4.2 cobalamin biosynthesis protein CobN compare
AO356_25535 -0.7 -1.8 hypothetical protein compare
AO356_16820 -0.7 -2.1 IclR family transcriptional regulator compare
AO356_06575 -0.7 -2.0 outer membrane protein assembly factor BamB compare
AO356_13965 -0.7 -2.1 hypothetical protein compare
AO356_30025 -0.7 -2.5 ferredoxin compare
AO356_22405 -0.7 -1.5 hypothetical protein compare
AO356_04575 -0.7 -4.8 RNA polymerase subunit sigma compare
AO356_15515 -0.7 -1.9 DNA polymerase III subunit epsilon compare
AO356_11635 -0.7 -4.4 recombinase RecF compare
AO356_28475 -0.7 -1.9 hypothetical protein compare
AO356_09080 -0.7 -1.6 thioredoxin compare


Specific Phenotypes

For 6 genes in this experiment

For carbon source D-Sorbitol in Pseudomonas fluorescens FW300-N2C3

For carbon source D-Sorbitol across organisms