Experiment set2IT084 for Rahnella sp. WP5

Compare to:

D-Xylose carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS12510 -5.4 -12.6 FAD-dependent oxidoreductase compare
EX31_RS15005 -5.3 -14.4 dihydroxy-acid dehydratase compare
EX31_RS03695 -5.1 -6.9 3-isopropylmalate dehydratase small subunit compare
EX31_RS15020 -5.1 -14.6 ketol-acid reductoisomerase compare
EX31_RS04035 -5.0 -10.1 phosphoserine phosphatase compare
EX31_RS14205 -4.9 -11.5 methylenetetrahydrofolate reductase compare
EX31_RS14190 -4.9 -12.7 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS14215 -4.9 -18.6 cystathionine gamma-synthase compare
EX31_RS02690 -4.9 -4.7 pyrroline-5-carboxylate reductase compare
EX31_RS12515 -4.8 -23.5 glutamate synthase large subunit compare
EX31_RS03935 -4.7 -11.6 threonine synthase compare
EX31_RS13275 -4.7 -12.0 diaminopimelate decarboxylase compare
EX31_RS14185 -4.6 -7.6 acetylglutamate kinase compare
EX31_RS20975 -4.6 -6.3 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS03685 -4.6 -14.6 3-isopropylmalate dehydrogenase compare
EX31_RS14200 -4.4 -16.9 phosphoenolpyruvate carboxylase compare
EX31_RS03945 -4.4 -22.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS03690 -4.4 -11.7 3-isopropylmalate dehydratase large subunit compare
EX31_RS14180 -4.4 -16.1 argininosuccinate lyase compare
EX31_RS05785 -4.4 -3.0 superoxide dismutase [Mn] compare
EX31_RS11465 -4.4 -6.0 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS16860 -4.4 -20.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS23415 -4.4 -6.0 citrate synthase compare
EX31_RS12825 -4.4 -7.8 ornithine carbamoyltransferase compare
EX31_RS03940 -4.3 -11.2 homoserine kinase compare
EX31_RS20175 -4.3 -9.1 cysteine synthase A compare
EX31_RS23245 -4.3 -15.5 asparagine synthase B compare
EX31_RS03835 -4.3 -8.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS03830 -4.2 -18.4 carbamoyl-phosphate synthase large subunit compare
EX31_RS16855 -4.2 -15.2 phosphoribosylamine--glycine ligase compare
EX31_RS11735 -4.2 -6.4 homoserine O-succinyltransferase compare
EX31_RS02520 -4.2 -2.9 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS03680 -4.2 -14.4 2-isopropylmalate synthase compare
EX31_RS11470 -4.1 -2.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS03250 -4.1 -10.1 RNA polymerase-binding protein DksA compare
EX31_RS13445 -4.1 -15.6 argininosuccinate synthase compare
EX31_RS11460 -4.0 -2.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS09965 -3.8 -6.8 anthranilate phosphoribosyltransferase compare
EX31_RS21470 -3.8 -10.9 phosphoglycerate dehydrogenase compare
EX31_RS12400 -3.8 -5.2 RNA polymerase factor sigma-54 compare
EX31_RS09975 -3.8 -7.6 tryptophan synthase subunit beta compare
EX31_RS15010 -3.8 -17.2 threonine ammonia-lyase, biosynthetic compare
EX31_RS22750 -3.8 -4.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS13160 -3.8 -13.0 amino-acid N-acetyltransferase compare
EX31_RS21850 -3.7 -2.5 pyridoxine 5'-phosphate synthase compare
EX31_RS20980 -3.7 -8.8 glutamate 5-kinase compare
EX31_RS22695 -3.7 -9.9 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS11455 -3.7 -4.9 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS09890 -3.7 -11.1 HTH-type transcriptional regulator CysB compare
EX31_RS21895 -3.7 -18.6 phosphoribosylformylglycinamidine synthase compare
EX31_RS11440 -3.6 -8.0 histidinol dehydrogenase compare
EX31_RS24385 -3.6 -3.5 dihydroorotase compare
EX31_RS18530 -3.6 -14.6 leucine-responsive transcriptional regulator Lrp compare
EX31_RS09955 -3.6 -7.8 anthranilate synthase component 1 compare
EX31_RS07585 -3.5 -9.3 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS02530 -3.5 -4.1 ABC transporter ATP-binding protein compare
EX31_RS14310 -3.5 -4.1 6-phosphofructokinase compare
EX31_RS09970 -3.5 -8.3 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS09765 -3.5 -5.2 xylose isomerase conserved
EX31_RS03035 -3.4 -10.6 LysE family transporter compare
EX31_RS07870 -3.4 -9.7 adenylyl-sulfate kinase compare
EX31_RS09980 -3.4 -6.0 tryptophan synthase subunit alpha compare
EX31_RS19570 -3.4 -14.2 amidophosphoribosyltransferase compare
EX31_RS18255 -3.3 -2.3 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS18095 -3.3 -6.7 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS09960 -3.3 -6.8 glutamine amidotransferase compare
EX31_RS20450 -3.3 -5.9 IMP dehydrogenase compare
EX31_RS09770 -3.3 -6.8 xylulokinase conserved
EX31_RS14500 -3.3 -12.6 orotate phosphoribosyltransferase compare
EX31_RS15875 -3.2 -14.8 nitrogen regulation protein NR(II) compare
EX31_RS22620 -3.2 -7.3 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS20190 -3.2 -2.1 PTS glucose transporter subunit IIA compare
EX31_RS07895 -3.1 -11.0 phosphoadenylyl-sulfate reductase compare
EX31_RS09855 -3.0 -5.9 orotidine-5'-phosphate decarboxylase compare
EX31_RS07900 -3.0 -16.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS22625 -3.0 -3.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS03920 -3.0 -9.8 transaldolase compare
EX31_RS15880 -3.0 -10.5 nitrogen regulation protein NR(I) compare
EX31_RS09745 -2.9 -7.1 XylR family transcriptional regulator conserved
EX31_RS22245 -2.9 -3.4 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS07905 -2.9 -17.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS03030 -2.9 -12.0 helix-turn-helix transcriptional regulator compare
EX31_RS14340 -2.9 -1.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS03790 -2.9 -3.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS11450 -2.8 -7.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS07875 -2.8 -17.7 sulfate adenylyltransferase subunit CysN compare
EX31_RS15870 -2.8 -1.9 glutamate--ammonia ligase compare
EX31_RS14335 -2.7 -1.9 serine O-acetyltransferase compare
EX31_RS03775 -2.7 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS11445 -2.7 -9.4 histidinol-phosphate transaminase compare
EX31_RS23440 -2.7 -1.8 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS08720 -2.7 -14.4 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS07880 -2.7 -17.1 sulfate adenylyltransferase subunit CysD compare
EX31_RS07590 -2.7 -3.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS20495 -2.6 -9.6 outer membrane protein assembly factor BamB compare
EX31_RS02515 -2.6 -5.4 PAS domain-containing protein compare
EX31_RS11435 -2.6 -6.7 ATP phosphoribosyltransferase compare
EX31_RS21400 -2.5 -4.4 transketolase compare
EX31_RS22250 -2.4 -4.2 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS12785 -2.4 -11.5 aspartate carbamoyltransferase compare
EX31_RS23485 -2.4 -2.7 colicin uptake protein TolR compare
EX31_RS04105 -2.4 -2.7 helix-turn-helix domain-containing protein compare
EX31_RS22145 -2.4 -3.1 phosphatidylglycerophosphatase A compare
EX31_RS18540 -2.3 -2.2 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS13045 -2.3 -13.4 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS03660 -2.2 -12.2 acetolactate synthase small subunit compare
EX31_RS15150 -2.2 -8.0 class I adenylate cyclase compare
EX31_RS20185 -2.2 -7.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS20735 -2.2 -5.0 exodeoxyribonuclease V subunit beta compare
EX31_RS03480 -2.2 -2.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS03665 -2.2 -16.6 acetolactate synthase 3 large subunit compare
EX31_RS04390 -2.2 -2.6 DNA polymerase III subunit chi compare
EX31_RS07955 -2.2 -14.3 GTP diphosphokinase compare
EX31_RS03400 -2.1 -5.2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS06000 -2.0 -5.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS09775 -2.0 -2.2 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS08745 -1.9 -1.9 50S ribosomal protein L9 compare
EX31_RS12875 -1.9 -2.5 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS19610 -1.9 -7.3 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS06140 -1.8 -10.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS06055 -1.8 -3.7 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS03220 -1.8 -2.0 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
EX31_RS05010 -1.7 -12.9 glycogen synthase GlgA compare
EX31_RS20265 -1.7 -3.0 YaiI/YqxD family protein compare
EX31_RS23490 -1.7 -1.8 cell envelope integrity protein TolA compare
EX31_RS07380 -1.6 -2.0 redox-regulated ATPase YchF compare
EX31_RS23500 -1.6 -3.6 peptidoglycan-associated lipoprotein Pal compare
EX31_RS18120 -1.6 -3.0 aliphatic sulfonates ABC transporter ATP-binding protein compare
EX31_RS25105 -1.6 -1.4 DUF2474 domain-containing protein compare
EX31_RS03955 -1.5 -6.3 two-component system response regulator ArcA compare
EX31_RS12520 -1.5 -10.5 aerobic respiration two-component sensor histidine kinase ArcB compare
EX31_RS01620 -1.5 -2.9 DUF2190 family protein compare
EX31_RS03900 -1.5 -5.2 molecular chaperone DnaK compare
EX31_RS21190 -1.5 -3.5 ribonuclease HI compare
EX31_RS03645 -1.5 -2.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS18535 -1.4 -4.7 thioredoxin-disulfide reductase compare
EX31_RS04710 -1.4 -3.3 adenine-specific DNA-methyltransferase compare
EX31_RS04725 -1.4 -3.4 shikimate kinase AroK compare
EX31_RS19480 -1.3 -5.1 acetate kinase compare
EX31_RS19485 -1.3 -5.0 phosphate acetyltransferase compare
EX31_RS03040 -1.3 -5.9 hypothetical protein compare
EX31_RS25340 -1.3 -4.0 hypothetical protein compare
EX31_RS15865 -1.3 -9.8 ribosome-dependent GTPase TypA compare
EX31_RS19780 -1.3 -5.3 tRNA-Arg compare
EX31_RS05145 -1.3 -5.5 inorganic phosphate transporter PitA compare
EX31_RS19655 -1.3 -3.9 beta-ketoacyl-ACP synthase I compare
EX31_RS21280 -1.3 -1.8 hydroxymyristoyl-ACP dehydratase compare
EX31_RS23425 -1.3 -4.9 succinate dehydrogenase membrane anchor subunit compare
EX31_RS19600 -1.3 -5.4 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS11525 -1.3 -2.6 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS19795 -1.3 -1.3 hypothetical protein compare
EX31_RS23495 -1.3 -5.0 Tol-Pal system protein TolB compare
EX31_RS03655 -1.3 -6.6 catabolite repressor/activator compare
EX31_RS18010 -1.2 -2.4 methylglyoxal synthase compare
EX31_RS24480 -1.2 -2.0 purine nucleoside phosphoramidase compare
EX31_RS10035 -1.2 -1.6 cardiolipin synthase compare
EX31_RS13335 -1.2 -1.1 transcriptional regulator compare
EX31_RS11045 -1.2 -1.3 NADP-dependent oxidoreductase compare
EX31_RS07785 -1.2 -0.8 carbon storage regulator CsrA compare
EX31_RS11760 -1.2 -10.5 methionine synthase compare
EX31_RS06735 -1.2 -2.5 HutD family protein compare
EX31_RS01680 -1.2 -3.4 antitermination protein Q compare
EX31_RS08825 -1.2 -7.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
EX31_RS14135 -1.2 -10.8 TonB-dependent vitamin B12 receptor BtuB compare
EX31_RS08515 -1.1 -9.2 lipoprotein NlpI compare
EX31_RS02360 -1.1 -1.8 CsbD family protein compare
EX31_RS07520 -1.1 -2.1 ornithine cyclodeaminase compare
EX31_RS25300 -1.1 -1.3 YqaE/Pmp3 family membrane protein compare
EX31_RS04630 -1.1 -7.5 aspartate aminotransferase family protein compare
EX31_RS01700 -1.1 -1.9 chromosome partitioning protein ParB compare
EX31_RS05060 -1.1 -5.7 gluconate operon transcriptional repressor GntR compare
EX31_RS19405 -1.1 -2.5 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS02525 -1.0 -4.7 ABC transporter permease compare
EX31_RS20180 -1.0 -1.5 phosphocarrier protein Hpr compare
EX31_RS15000 -1.0 -6.7 branched-chain amino acid transaminase compare
EX31_RS04925 -1.0 -2.4 Fe-S biogenesis protein NfuA compare
EX31_RS19700 -1.0 -2.5 phosphohistidine phosphatase SixA compare
EX31_RS08335 -1.0 -8.0 cyclic di-GMP phosphodiesterase compare
EX31_RS01235 -1.0 -2.3 metalloregulator ArsR/SmtB family transcription factor compare
EX31_RS24400 -1.0 -5.9 23S rRNA pseudouridine(955/2504/2580) synthase RluC compare
EX31_RS24660 -1.0 -1.6 MBL fold metallo-hydrolase compare
EX31_RS09755 -1.0 -2.8 xylose ABC transporter ATP-binding protein compare
EX31_RS01065 -1.0 -2.9 glycine zipper family protein compare
EX31_RS10145 -1.0 -2.2 ABC transporter permease compare
EX31_RS24310 -1.0 -2.9 hypothetical protein compare
EX31_RS20655 -1.0 -1.1 hypothetical protein compare
EX31_RS23435 -1.0 -3.5 succinate dehydrogenase iron-sulfur subunit compare
EX31_RS25875 -1.0 -2.8 hypothetical protein compare
EX31_RS05270 -1.0 -3.1 carbonic anhydrase compare
EX31_RS16845 -1.0 -2.8 DNA-binding protein HU-alpha compare
EX31_RS09590 -1.0 -2.3 flagellar type III secretion system pore protein FliP compare
EX31_RS08150 -1.0 -6.8 inorganic triphosphatase compare
EX31_RS09470 -0.9 -2.8 flagella biosynthesis regulatory protein FliT compare
EX31_RS06485 -0.9 -1.4 YdbL family protein compare
EX31_RS23315 -0.9 -3.9 replication initiation negative regulator SeqA compare
EX31_RS07105 -0.9 -2.1 DUF3811 domain-containing protein compare
EX31_RS10150 -0.9 -3.5 ABC transporter permease compare
EX31_RS00450 -0.9 -1.9 methionine-R-sulfoxide reductase compare
EX31_RS16655 -0.9 -1.6 hypothetical protein compare
EX31_RS12255 -0.9 -6.3 ribonuclease G compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source D-Xylose in Rahnella sp. WP5

For carbon source D-Xylose across organisms