Experiment set2IT084 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Lysine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS17355 +1.6 1.8 hypothetical protein compare
RR42_RS21505 +1.3 1.3 hypothetical protein compare
RR42_RS23140 +1.3 1.0 peptidylprolyl isomerase compare
RR42_RS32645 +1.2 2.1 2-keto-4-pentenoate hydratase compare
RR42_RS24930 +1.1 1.4 AraC family transcriptional regulator compare
RR42_RS27470 +1.1 1.6 peroxiredoxin OsmC compare
RR42_RS06860 +1.0 1.3 hypothetical protein compare
RR42_RS16335 +1.0 1.8 hypothetical protein compare
RR42_RS27320 +0.9 2.1 ferredoxin compare
RR42_RS23205 +0.9 1.2 hypothetical protein compare
RR42_RS15120 +0.9 1.8 4-oxalocrotonate tautomerase compare
RR42_RS27550 +0.9 1.3 hypothetical protein compare
RR42_RS06250 +0.9 1.8 dihydrodipicolinate synthase compare
RR42_RS16495 +0.9 1.6 branched-chain amino acid aminotransferase compare
RR42_RS33695 +0.9 2.4 membrane protein compare
RR42_RS35725 +0.9 2.1 flagellar biosynthesis protein FlgB compare
RR42_RS09375 +0.9 1.2 taurine dioxygenase compare
RR42_RS24785 +0.9 2.8 NAD-dependent dehydratase compare
RR42_RS21075 +0.8 1.2 phosphoribosyltransferase compare
RR42_RS23305 +0.8 1.0 hypothetical protein compare
RR42_RS07920 +0.8 1.3 cyclophilin-like superfamily protein compare
RR42_RS22680 +0.8 2.2 enoyl-CoA hydratase compare
RR42_RS19805 +0.8 3.3 enoyl-CoA hydratase compare
RR42_RS08585 +0.8 2.3 baseplate assembly protein compare
RR42_RS23460 +0.8 1.6 alpha/beta hydrolase compare
RR42_RS34525 +0.8 3.0 type VI secretion protein VasK compare
RR42_RS21850 +0.8 1.0 3-oxoadipate enol-lactonase compare
RR42_RS03635 +0.8 2.5 trypsin-like serine protease compare
RR42_RS17940 +0.8 2.3 gamma-glutamyl kinase compare
RR42_RS35995 +0.8 2.1 membrane protein compare
RR42_RS13890 +0.8 1.8 histidine kinase compare
RR42_RS35110 +0.8 1.8 hypothetical protein compare
RR42_RS21380 +0.8 1.4 cupin compare
RR42_RS08770 +0.7 0.8 2-nitropropane dioxygenase compare
RR42_RS20710 +0.7 3.3 AraC family transcriptional regulator compare
RR42_RS17665 +0.7 1.4 chorismate lyase compare
RR42_RS02960 +0.7 2.5 triphosphoribosyl-dephospho-CoA synthase compare
RR42_RS34610 +0.7 2.2 hydroxyacid dehydrogenase compare
RR42_RS33970 +0.7 2.3 LysR family transcriptional regulator compare
RR42_RS12155 +0.7 1.6 molecular chaperone compare
RR42_RS26875 +0.7 2.1 LysR family transcriptional regulator compare
RR42_RS32700 +0.7 3.6 alpha/beta hydrolase compare
RR42_RS27705 +0.7 2.0 NAD-dependent deacetylase compare
RR42_RS23250 +0.7 2.1 glyoxalase compare
RR42_RS06510 +0.7 1.7 hypothetical protein compare
RR42_RS28400 +0.7 1.4 CoA-transferase compare
RR42_RS08220 +0.7 1.3 hypothetical protein compare
RR42_RS15060 +0.7 2.1 membrane protein compare
RR42_RS04850 +0.7 1.3 hypothetical protein compare
RR42_RS03855 +0.7 3.1 MFS transporter compare
RR42_RS06925 +0.7 1.2 hypothetical protein compare
RR42_RS06735 +0.7 1.0 hypothetical protein compare
RR42_RS33690 +0.6 0.9 phosphate acetyltransferase compare
RR42_RS31995 +0.6 2.1 flavin reductase compare
RR42_RS33850 +0.6 1.2 hypothetical protein compare
RR42_RS32555 +0.6 1.5 nitrilotriacetate monooxygenase compare
RR42_RS02215 +0.6 2.7 fumarate reductase compare
RR42_RS04770 +0.6 1.0 methylglyoxal synthase compare
RR42_RS09590 +0.6 1.3 hypothetical protein compare
RR42_RS13685 +0.6 1.2 cupin compare
RR42_RS21925 +0.6 1.6 membrane protein compare
RR42_RS04245 +0.6 1.8 chemotaxis protein CheY compare
RR42_RS29505 +0.6 2.5 hypothetical protein compare
RR42_RS03050 +0.6 1.8 energy transducer TonB compare
RR42_RS32670 +0.6 1.1 phenol hydroxylase compare
RR42_RS12085 +0.6 1.5 glyoxalase compare
RR42_RS07150 +0.6 0.8 hypothetical protein compare
RR42_RS05410 +0.6 1.7 acetyltransferase compare
RR42_RS12240 +0.6 0.8 hypothetical protein compare
RR42_RS09555 +0.6 1.2 universal stress protein UspA compare
RR42_RS28200 +0.6 2.5 membrane protein compare
RR42_RS32285 +0.6 2.8 LysR family transcriptional regulator compare
RR42_RS25720 +0.6 1.9 hypothetical protein compare
RR42_RS15525 +0.6 0.7 hypothetical protein compare
RR42_RS04100 +0.6 2.1 pilus assembly protein CpaF compare
RR42_RS08795 +0.6 2.0 molybdopterin-guanine dinucleotide biosynthesis protein B compare
RR42_RS29000 +0.6 2.7 Crp/Fnr family transcriptional regulator compare
RR42_RS12235 +0.6 1.9 terminase compare
RR42_RS08025 +0.6 0.8 phage Gp37Gp68 compare
RR42_RS31910 +0.6 1.5 acyl-CoA dehydrogenase compare
RR42_RS08185 +0.6 0.6 hypothetical protein compare
RR42_RS10110 +0.6 2.4 phosphonate ABC transporter substrate-binding protein compare
RR42_RS23120 +0.6 1.6 hypothetical protein compare
RR42_RS05665 +0.5 0.8 urease accessory protein UreJ compare
RR42_RS26485 +0.5 1.0 2,5-dihydroxypyridine 5,6-dioxygenase compare
RR42_RS16195 +0.5 1.4 haloacid dehalogenase compare
RR42_RS26455 +0.5 0.8 amino acid ABC transporter ATP-binding protein compare
RR42_RS06415 +0.5 1.7 glyoxalase compare
RR42_RS00990 +0.5 2.1 GntR family transcriptional regulator compare
RR42_RS14395 +0.5 0.7 entericidin compare
RR42_RS25550 +0.5 1.5 Crp/Fnr family transcriptional regulator compare
RR42_RS07140 +0.5 0.9 hypothetical protein compare
RR42_RS06245 +0.5 1.2 SAM-dependent methyltransferase compare
RR42_RS23125 +0.5 1.0 hypothetical protein compare
RR42_RS34570 +0.5 1.1 hypothetical protein compare
RR42_RS06720 +0.5 2.1 hypothetical protein compare
RR42_RS03685 +0.5 1.6 GTP cyclohydrolase compare
RR42_RS24690 +0.5 0.8 hypothetical protein compare
RR42_RS30085 +0.5 2.1 hypothetical protein compare
RR42_RS10410 +0.5 1.8 hypothetical protein compare
RR42_RS18520 +0.5 1.6 hypothetical protein compare
RR42_RS16620 +0.5 1.6 hypothetical protein compare
RR42_RS24760 +0.5 0.7 hypothetical protein compare
RR42_RS24830 +0.5 2.4 3-oxoacyl-ACP reductase compare
RR42_RS29285 +0.5 1.3 hypothetical protein compare
RR42_RS17810 +0.5 2.2 hypothetical protein compare
RR42_RS03715 +0.5 1.9 inositol monophosphatase compare
RR42_RS28935 +0.5 3.6 hypothetical protein compare
RR42_RS30360 +0.5 3.4 cytochrome C signal peptide protein compare
RR42_RS09310 +0.5 0.9 IclR family transcriptional regulator compare
RR42_RS28720 +0.5 1.6 hypothetical protein compare
RR42_RS16370 +0.5 2.0 glutamine ABC transporter ATP-binding protein compare
RR42_RS15375 +0.5 2.2 AsnC family transcriptional regulator compare
RR42_RS02205 +0.5 1.0 succinate dehydrogenase compare
RR42_RS12280 +0.5 2.4 aliphatic sulfonate ABC transporter ATP-binding protein compare
RR42_RS25100 +0.5 1.2 dehydratase compare
RR42_RS36370 +0.5 1.3 dihydrodipicolinate synthase compare
RR42_RS03605 +0.5 1.8 glutathionyl-hydroquinone reductase YqjG compare
RR42_RS07225 +0.5 0.9 hypothetical protein compare
RR42_RS31830 +0.5 1.0 short-chain dehydrogenase compare
RR42_RS30310 +0.5 0.9 signal transduction protein compare
RR42_RS28045 +0.5 2.2 3-oxoacyl-ACP reductase compare
RR42_RS36680 +0.5 1.5 hypothetical protein compare
RR42_RS19785 +0.5 2.0 allantoate amidohydrolase compare
RR42_RS24510 +0.5 0.5 hypothetical protein compare
RR42_RS27215 +0.5 1.6 LysR family transcriptional regulator compare
RR42_RS15740 +0.5 0.9 hypothetical protein compare
RR42_RS37030 +0.5 2.4 ABC transporter substrate-binding protein compare
RR42_RS36355 +0.5 1.1 (2Fe-2S)-binding protein compare
RR42_RS31950 +0.5 1.2 ketoacid CoA transferase compare
RR42_RS29295 +0.5 1.7 hypothetical protein compare
RR42_RS02280 +0.5 1.9 ABC transporter permease compare
RR42_RS23325 +0.5 1.8 class D beta-lactamase compare
RR42_RS06865 +0.5 2.0 hypothetical protein compare
RR42_RS03875 +0.5 1.0 nucleoside 2-deoxyribosyltransferase compare
RR42_RS03830 +0.5 1.9 molybdenum ABC transporter ATPase compare
RR42_RS01105 +0.5 1.5 membrane protein compare
RR42_RS36445 +0.5 2.1 acetyl-CoA acetyltransferase compare
RR42_RS04935 +0.5 2.4 hypothetical protein compare
RR42_RS06725 +0.5 1.9 hypothetical protein compare
RR42_RS26105 +0.5 0.9 C4-dicarboxylate transporter compare
RR42_RS25970 +0.5 1.7 acyl-CoA dehydrogenase compare
RR42_RS05780 +0.5 1.6 hypothetical protein compare
RR42_RS03840 +0.5 2.7 molybdate ABC transporter substrate-binding protein compare
RR42_RS25625 +0.5 1.1 LysR family transcriptional regulator compare
RR42_RS15755 +0.5 0.8 acetyltransferase compare
RR42_RS10540 +0.5 1.1 acetyl-CoA acetyltransferase compare
RR42_RS24985 +0.5 1.7 hypothetical protein compare
RR42_RS07665 +0.5 1.4 hypothetical protein compare
RR42_RS12390 +0.5 1.5 transporter compare
RR42_RS15275 +0.5 1.7 ankyrin compare
RR42_RS17340 +0.5 1.2 glutathione peroxidase compare
RR42_RS03980 +0.5 0.9 Fis family transcriptional regulator compare
RR42_RS12215 +0.5 1.2 ribonuclease compare
RR42_RS27100 +0.5 2.5 hypothetical protein compare
RR42_RS17805 +0.5 0.5 hypothetical protein compare
RR42_RS08045 +0.5 1.4 hypothetical protein compare
RR42_RS28970 +0.5 1.5 3-oxoacyl-ACP reductase compare
RR42_RS27025 +0.4 2.1 hypothetical protein compare
RR42_RS18335 +0.4 1.3 nitrate ABC transporter ATP-binding protein compare
RR42_RS09305 +0.4 2.4 LysR family transcriptional regulator compare
RR42_RS03680 +0.4 2.2 hypothetical protein compare
RR42_RS29060 +0.4 2.1 LacI family transcriptional regulator compare
RR42_RS36555 +0.4 1.7 MFS transporter compare
RR42_RS28075 +0.4 1.3 phosphonate metabolism protein PhnM compare
RR42_RS30340 +0.4 0.6 ABC transporter permease compare
RR42_RS16175 +0.4 0.8 enoyl-CoA hydratase compare
RR42_RS34450 +0.4 1.5 glycosyl transferase compare
RR42_RS20050 +0.4 2.7 hypothetical protein compare
RR42_RS20310 +0.4 0.6 copper-binding protein compare
RR42_RS20400 +0.4 2.6 aldolase compare
RR42_RS04205 +0.4 1.1 glycine cleavage system regulatory protein compare
RR42_RS32030 +0.4 2.3 LuxR family transcriptional regulator compare
RR42_RS29020 +0.4 1.2 hypothetical protein compare
RR42_RS29335 +0.4 1.0 integrase compare
RR42_RS32365 +0.4 2.8 magnesium ABC transporter ATPase compare
RR42_RS03000 +0.4 1.7 ABC transporter substrate-binding protein compare
RR42_RS27165 +0.4 1.2 hypothetical protein compare
RR42_RS11085 +0.4 1.8 acetyl-CoA acetyltransferase compare
RR42_RS30465 +0.4 3.1 monovalent cation/H+ antiporter subunit A compare
RR42_RS16430 +0.4 1.5 transposase compare
RR42_RS19645 +0.4 1.1 DNA topoisomerase compare
RR42_RS12260 +0.4 2.3 sulfate transporter compare
RR42_RS36020 +0.4 1.6 hemagglutinin compare
RR42_RS23230 +0.4 0.7 glycerate kinase compare
RR42_RS17490 +0.4 1.8 NADP transhydrogenase subunit alpha compare
RR42_RS30965 +0.4 1.1 hypothetical protein compare
RR42_RS36615 +0.4 1.9 acyl-CoA dehydrogenase compare
RR42_RS23595 +0.4 1.0 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS35775 +0.4 1.3 chemotaxis protein CheZ compare
RR42_RS15080 +0.4 0.8 GntR family transcriptional regulator compare
RR42_RS03660 +0.4 1.5 translation initiation factor 1 compare
RR42_RS09130 +0.4 1.8 isoquinoline 1-oxidoreductase compare
RR42_RS14135 +0.4 1.8 SAM-dependent methyltransferase compare
RR42_RS26050 +0.4 1.2 hypothetical protein compare
RR42_RS13855 +0.4 1.8 hypothetical protein compare
RR42_RS37320 +0.4 1.1 hypothetical protein compare
RR42_RS31765 +0.4 2.1 membrane protein compare
RR42_RS06505 +0.4 1.8 hypothetical protein compare
RR42_RS03675 +0.4 1.7 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source L-Lysine in Cupriavidus basilensis FW507-4G11

For nitrogen source L-Lysine across organisms