Experiment set2IT083 for Pseudomonas fluorescens FW300-N2C3

Compare to:

Glycerol carbon source

200 most important genes:

  gene name fitness t score description  
AO356_03495 -6.4 -4.4 phosphoglycolate phosphatase compare
AO356_08635 -6.2 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
AO356_14440 -6.2 -4.3 indole-3-glycerol-phosphate synthase compare
AO356_09815 -5.4 -5.3 imidazoleglycerol-phosphate dehydratase compare
AO356_21440 -5.4 -8.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_12525 -5.4 -8.2 acetylglutamate kinase compare
AO356_18250 -5.4 -12.0 glycerol kinase compare
AO356_21405 -5.3 -5.2 3-isopropylmalate dehydratase compare
AO356_09520 -5.3 -3.7 phosphoribosyl-AMP cyclohydrolase compare
AO356_06550 -5.1 -11.5 2-isopropylmalate synthase compare
AO356_06970 -5.0 -9.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_14435 -5.0 -6.9 anthranilate phosphoribosyltransferase compare
AO356_18325 -5.0 -12.5 argininosuccinate synthase compare
AO356_10915 -5.0 -10.7 tryptophan synthase subunit beta compare
AO356_09810 -4.8 -4.7 imidazole glycerol phosphate synthase subunit HisH compare
AO356_18275 -4.8 -13.1 ornithine carbamoyltransferase compare
AO356_13085 -4.8 -10.2 N-acetylglutamate synthase compare
AO356_10000 -4.8 -5.7 hypothetical protein compare
AO356_16175 -4.7 -7.2 acetolactate synthase 3 regulatory subunit compare
AO356_21415 -4.7 -10.3 3-isopropylmalate dehydrogenase compare
AO356_06965 -4.7 -8.9 histidinol dehydrogenase compare
AO356_10910 -4.6 -9.4 tryptophan synthase subunit alpha compare
AO356_13405 -4.5 -10.5 methionine biosynthesis protein MetW compare
AO356_09375 -4.5 -23.6 glutamate synthase compare
AO356_13410 -4.4 -12.6 homoserine O-acetyltransferase compare
AO356_13250 -4.4 -10.2 dihydroxy-acid dehydratase compare
AO356_12520 -4.3 -3.0 orotate phosphoribosyltransferase compare
AO356_09370 -4.3 -13.1 glutamate synthase compare
AO356_13605 -4.3 -7.7 5,10-methylenetetrahydrofolate reductase compare
AO356_19090 -4.2 -4.0 phosphoribosylaminoimidazole synthetase compare
AO356_16180 -4.2 -15.3 ketol-acid reductoisomerase compare
AO356_12020 -4.1 -13.3 pyruvate carboxylase subunit A compare
AO356_09800 -4.1 -6.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_08735 -4.0 -14.0 phosphoserine phosphatase compare
AO356_14360 -4.0 -7.2 mannose-1-phosphate guanylyltransferase compare
AO356_14420 -4.0 -15.7 anthranilate synthase compare
AO356_16170 -3.9 -11.5 acetolactate synthase 3 catalytic subunit compare
AO356_00555 -3.9 -11.3 sulfite reductase compare
AO356_09525 -3.8 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_12025 -3.8 -15.7 pyruvate carboxylase subunit B compare
AO356_18255 -3.7 -12.9 glycerol uptake facilitator GlpF compare
AO356_12780 -3.6 -9.2 argininosuccinate lyase compare
AO356_21470 -3.6 -7.5 O-succinylhomoserine sulfhydrylase compare
AO356_10005 -3.5 -10.9 branched-chain amino acid permease (azaleucine resistance) compare
AO356_22200 -3.5 -9.3 sirohydrochlorin ferrochelatase compare
AO356_21400 -3.5 -5.6 isopropylmalate isomerase compare
AO356_10300 -3.4 -4.4 3-phosphoglycerate dehydrogenase compare
AO356_09795 -3.4 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
AO356_10340 -3.3 -14.3 phosphoserine phosphatase compare
AO356_06385 -3.3 -5.0 recombinase XerD compare
AO356_21465 -3.3 -5.8 amidophosphoribosyltransferase compare
AO356_18025 -3.2 -3.8 ATP-dependent DNA helicase RuvB compare
AO356_16050 -3.2 -3.1 glucose-6-phosphate isomerase compare
AO356_14430 -3.1 -6.9 anthranilate synthase compare
AO356_05225 -3.1 -7.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_09995 -3.0 -8.7 LysR family transcriptional regulator compare
AO356_00560 -3.0 -2.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_00880 -2.9 -3.3 integration host factor subunit alpha compare
AO356_11315 -2.9 -2.0 shikimate dehydrogenase compare
AO356_01745 -2.8 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_07915 -2.8 -3.8 exodeoxyribonuclease V subunit beta compare
AO356_07480 -2.7 -2.6 carbamoyl phosphate synthase large subunit compare
AO356_12015 -2.7 -9.1 LysR family transcriptional regulator compare
AO356_17520 -2.7 -2.6 phosphoribosylformylglycinamidine synthase compare
AO356_02175 -2.6 -7.1 transaldolase compare
AO356_27180 -2.6 -5.8 hypothetical protein compare
AO356_15165 -2.5 -3.0 protein cII compare
AO356_03725 -2.5 -4.1 histidine kinase compare
AO356_17830 -2.4 -5.4 pyruvate kinase compare
AO356_01750 -2.4 -4.6 ATP-dependent Clp protease proteolytic subunit compare
AO356_21330 -2.4 -10.5 aromatic amino acid aminotransferase compare
AO356_10075 -2.2 -7.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_18730 -2.2 -9.3 arginine N-succinyltransferase compare
AO356_06960 -2.2 -7.5 histidinol-phosphate aminotransferase compare
AO356_17950 -2.1 -9.3 histidine kinase compare
AO356_16075 -2.1 -4.7 Fis family transcriptional regulator compare
AO356_16435 -2.1 -3.1 hypothetical protein compare
AO356_05670 -2.0 -3.3 recombinase RecA compare
AO356_12380 -2.0 -7.5 ATP-dependent DNA helicase RecG compare
AO356_15815 -2.0 -1.7 gamma-glutamyl kinase compare
AO356_27210 -1.9 -8.7 hypothetical protein compare
AO356_20830 -1.9 -3.5 phosphoadenosine phosphosulfate reductase compare
AO356_07910 -1.7 -2.3 exodeoxyribonuclease V subunit alpha compare
AO356_18020 -1.7 -3.7 ATP-dependent DNA helicase RuvA compare
AO356_01555 -1.7 -7.2 acyl-CoA dehydrogenase compare
AO356_02315 -1.7 -3.9 DNA topoisomerase I compare
AO356_03715 -1.6 -8.2 chemotaxis protein CheA compare
AO356_29730 -1.6 -2.8 MarR family transcriptional regulator compare
AO356_05160 -1.6 -6.0 glucose-6-phosphate dehydrogenase compare
AO356_27250 -1.6 -4.4 hypothetical protein compare
AO356_11025 -1.6 -4.0 transcriptional regulator PhoU compare
AO356_03810 -1.6 -4.3 anti-anti-sigma factor compare
AO356_28090 -1.5 -1.8 ABC transporter ATP-binding protein compare
AO356_10330 -1.5 -9.6 threonine dehydratase compare
AO356_03180 -1.5 -3.8 CysB family transcriptional regulator compare
AO356_19180 -1.4 -5.3 cobalamin synthase compare
AO356_27230 -1.4 -3.6 hypothetical protein compare
AO356_12990 -1.4 -6.0 5-formyltetrahydrofolate cyclo-ligase compare
AO356_27205 -1.4 -5.3 hypothetical protein compare
AO356_12005 -1.4 -7.8 transcriptional regulator compare
AO356_12725 -1.4 -4.0 recombinase XerC compare
AO356_19175 -1.3 -4.0 alpha-ribazole phosphatase compare
AO356_18775 -1.3 -3.1 aspartate kinase compare
AO356_13700 -1.3 -2.0 hypothetical protein compare
AO356_20880 -1.3 -2.4 3-methylitaconate isomerase compare
AO356_12900 -1.3 -3.3 exopolyphosphatase compare
AO356_03800 -1.2 -1.2 histidine kinase compare
AO356_03435 -1.2 -1.9 integration host factor subunit beta compare
AO356_11610 -1.2 -1.9 glycerol acyltransferase compare
AO356_02290 -1.2 -3.0 TetR family transcriptional regulator compare
AO356_17890 -1.2 -2.0 H-NS histone compare
AO356_04405 -1.1 -2.7 NADH dehydrogenase compare
AO356_14135 -1.1 -7.6 biotin synthase compare
AO356_06065 -1.1 -2.4 ArsC family transcriptional regulator compare
AO356_27215 -1.1 -1.7 hypothetical protein compare
AO356_14295 -1.1 -1.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_01840 -1.1 -2.2 uracil permease compare
AO356_18735 -1.1 -3.6 arginine N-succinyltransferase compare
AO356_13425 -1.1 -1.9 hypothetical protein compare
AO356_18910 -1.0 -6.4 chemotaxis protein compare
AO356_22675 -1.0 -1.6 sulfate transporter compare
AO356_04560 -1.0 -2.0 serine peptidase compare
AO356_19140 -1.0 -6.1 cobyrinic acid a,c-diamide synthase compare
AO356_27170 -1.0 -2.9 XRE family transcriptional regulator compare
AO356_08300 -1.0 -3.0 cobalt-precorrin-6X reductase compare
AO356_16870 -1.0 -6.0 benzoate transporter compare
AO356_02735 -1.0 -1.7 type III secretion regulator InvE compare
AO356_26040 -1.0 -1.4 hypothetical protein compare
AO356_16505 -1.0 -2.4 molybdopterin-synthase adenylyltransferase compare
AO356_03690 -1.0 -4.4 chemotaxis protein CheW compare
AO356_08290 -1.0 -2.7 precorrin-6Y C5,15-methyltransferase compare
AO356_00605 -1.0 -3.2 TetR family transcriptional regulator compare
AO356_10585 -1.0 -5.8 hypothetical protein compare
AO356_24965 -0.9 -1.9 GntR family transcriptional regulator compare
AO356_00355 -0.9 -4.7 chemotaxis protein CheY compare
AO356_16070 -0.9 -3.9 poly(A) polymerase compare
AO356_19085 -0.9 -4.5 phosphoribosylglycinamide formyltransferase compare
AO356_25720 -0.9 -1.9 polyamine ABC transporter permease compare
AO356_15450 -0.9 -6.8 AMP nucleosidase compare
AO356_19045 -0.9 -5.9 chemotaxis protein CheY compare
AO356_10015 -0.9 -6.1 protein BsmA compare
AO356_25390 -0.9 -1.5 enamine deaminase RidA compare
AO356_27425 -0.9 -2.5 porin compare
AO356_01545 -0.9 -1.4 hypothetical protein compare
AO356_08280 -0.9 -2.8 oxidoreductase compare
AO356_02070 -0.9 -2.7 phage tail protein compare
AO356_09425 -0.9 -4.8 malate dehydrogenase compare
AO356_03070 -0.9 -6.1 histidine kinase compare
AO356_16665 -0.9 -5.8 sulfate adenylyltransferase compare
AO356_00505 -0.9 -4.9 cobalamin biosynthesis protein CobN compare
AO356_18780 -0.9 -1.5 carbon storage regulator compare
AO356_22680 -0.9 -1.1 chemotaxis protein CheY compare
AO356_18065 -0.9 -1.8 7-carboxy-7-deazaguanine synthase compare
AO356_11465 -0.9 -4.6 DNA polymerase I compare
AO356_18260 -0.9 -2.3 hypothetical protein compare
AO356_12730 -0.9 -1.6 hypothetical protein compare
AO356_13455 -0.9 -2.4 uracil phosphoribosyltransferase compare
AO356_15140 -0.8 -1.1 homoserine dehydrogenase compare
AO356_12610 -0.8 -1.6 Fe-S oxidoreductase compare
AO356_02720 -0.8 -1.6 type III secretion protein compare
AO356_11675 -0.8 -4.6 chromosome partitioning protein compare
AO356_01740 -0.8 -2.2 DNA-binding protein compare
AO356_28645 -0.8 -1.9 AraC family transcriptional regulator compare
AO356_27240 -0.8 -2.5 hypothetical protein compare
AO356_04205 -0.8 -1.9 hypothetical protein compare
AO356_19170 -0.8 -2.6 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
AO356_27200 -0.8 -2.9 hypothetical protein compare
AO356_02205 -0.8 -1.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_14920 -0.8 -1.5 hypothetical protein compare
AO356_03685 -0.8 -4.3 chemotaxis protein CheW compare
AO356_08270 -0.8 -4.8 precorrin-2 C20-methyltransferase compare
AO356_00545 -0.8 -5.1 methionine synthase compare
AO356_16670 -0.8 -5.3 adenylylsulfate kinase compare
AO356_07540 -0.8 -1.5 SsrA-binding protein compare
AO356_03780 -0.8 -1.2 flagellar motor switch protein compare
AO356_18855 -0.8 -1.2 hypothetical protein compare
AO356_08275 -0.8 -1.7 precorrin isomerase compare
AO356_27840 -0.8 -4.5 sodium:proton antiporter compare
AO356_17770 -0.8 -1.1 hypothetical protein compare
AO356_25975 -0.8 -3.9 aldehyde dehydrogenase compare
AO356_02325 -0.8 -1.6 3-ketoacyl-CoA thiolase compare
AO356_11680 -0.8 -1.3 chromosome partitioning protein ParB compare
AO356_27245 -0.7 -1.2 hypothetical protein compare
AO356_27235 -0.7 -3.0 hypothetical protein compare
AO356_29255 -0.7 -2.2 hypothetical protein compare
AO356_19160 -0.7 -3.6 cobyric acid synthase compare
AO356_08235 -0.7 -4.1 histidine kinase compare
AO356_07920 -0.7 -2.5 exodeoxyribonuclease V subunit gamma compare
AO356_08975 -0.7 -5.5 diguanylate cyclase compare
AO356_18745 -0.7 -3.8 succinylarginine dihydrolase compare
AO356_00530 -0.7 -2.4 precorrin-4 C11-methyltransferase compare
AO356_20835 -0.7 -2.9 phosphoserine phosphatase compare
AO356_07005 -0.7 -1.4 ABC transporter ATP-binding protein compare
AO356_03405 -0.7 -2.4 serine acetyltransferase compare
AO356_02495 -0.7 -3.1 recombination protein RecR compare
AO356_30275 -0.7 -1.1 hypothetical protein compare
AO356_25485 -0.7 -2.1 aldehyde dehydrogenase compare
AO356_06050 -0.7 -5.0 protein-PII uridylyltransferase compare
AO356_12375 -0.7 -4.7 histidine kinase compare
AO356_09350 -0.7 -1.9 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N2C3 in carbon source experiments

For carbon source Glycerol across organisms