Experiment set2IT083 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

200 most important genes:

  gene name fitness t score description  
Xcc-8004.1050.1 -5.1 -3.3 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.621.1 -5.0 -4.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.2011.1 -4.9 -2.1 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.2945.1 -4.8 -1.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.1049.1 -4.7 -5.6 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.3536.1 -4.7 -3.2 FIG01210913: hypothetical protein compare
Xcc-8004.2012.1 -4.6 -4.5 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.1676.1 -4.6 -7.0 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.956.1 -4.5 -3.1 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) compare
Xcc-8004.403.1 -4.4 -3.7 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) compare
Xcc-8004.4481.1 -4.3 -6.6 hypothetical protein compare
Xcc-8004.4026.1 -4.3 -4.2 FIG01209666: hypothetical protein compare
Xcc-8004.618.1 -4.3 -2.3 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.1027.1 -4.2 -1.6 Two-component system sensor protein compare
Xcc-8004.2385.1 -4.1 -12.4 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.323.1 -4.1 -2.5 FIG01210738: hypothetical protein compare
Xcc-8004.622.1 -4.1 -2.8 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.2842.1 -4.1 -1.5 FIG01212239: hypothetical protein compare
Xcc-8004.505.1 -4.1 -7.3 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.451.1 -4.1 -3.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.2260.1 -4.1 -6.7 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.3281.1 -4.0 -4.8 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.1334.1 -4.0 -1.2 hypothetical protein compare
Xcc-8004.4073.1 -4.0 -7.2 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.1967.1 -3.9 -6.0 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.271.1 -3.8 -2.3 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.3394.1 -3.8 -3.6 hypothetical protein compare
Xcc-8004.5203.1 -3.8 -1.4 Twin-arginine translocation protein TatB compare
Xcc-8004.3855.1 -3.8 -5.7 FIG01209965: hypothetical protein compare
Xcc-8004.2977.1 -3.8 -18.7 hypothetical protein compare
Xcc-8004.1955.1 -3.7 -5.1 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.4737.1 -3.7 -2.5 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.2323.1 -3.7 -7.4 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.4530.1 -3.7 -4.1 Dethiobiotin synthetase (EC 6.3.3.3) compare
Xcc-8004.3282.1 -3.6 -6.0 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.4620.1 -3.6 -8.6 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.4824.1 -3.5 -12.6 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.2316.1 -3.5 -11.4 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.1964.1 -3.5 -10.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.2322.1 -3.5 -5.4 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.1316.1 -3.5 -2.0 hypothetical protein compare
Xcc-8004.43.1 -3.5 -7.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.4427.1 -3.4 -2.0 General secretion pathway protein J compare
Xcc-8004.1616.1 -3.4 -1.0 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.649.1 -3.4 -1.0 hypothetical protein compare
Xcc-8004.3283.1 -3.4 -10.7 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.2320.1 -3.4 -6.9 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.5020.1 -3.4 -4.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.3703.1 -3.4 -1.8 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1515.1 -3.4 -1.9 hypothetical protein compare
Xcc-8004.2944.1 -3.4 -7.8 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.2387.1 -3.3 -2.4 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.3361.1 -3.3 -5.4 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Xcc-8004.1060.1 -3.3 -9.9 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.4430.1 -3.3 -1.0 General secretion pathway protein G compare
Xcc-8004.2318.1 -3.3 -6.4 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.713.1 -3.3 -0.7 FIG01210186: hypothetical protein compare
Xcc-8004.1336.1 -3.3 -8.4 two-component system sensor protein compare
Xcc-8004.657.1 -3.3 -7.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.1010.1 -3.3 -6.9 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.2081.1 -3.2 -2.2 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.2421.1 -3.2 -17.0 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.703.1 -3.2 -1.2 hypothetical protein compare
Xcc-8004.4596.1 -3.2 -7.6 hypothetical protein compare
Xcc-8004.4507.1 -3.2 -6.0 Glycosyltransferase compare
Xcc-8004.1962.1 -3.2 -2.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.4329.1 -3.2 -1.0 D-galactose 1-dehydrogenase (EC 1.1.1.48) compare
Xcc-8004.2948.1 -3.2 -6.4 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.705.1 -3.1 -2.3 hypothetical protein compare
Xcc-8004.2386.1 -3.1 -14.7 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.3049.1 -3.1 -9.8 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.1059.1 -3.1 -7.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.2384.1 -3.1 -12.9 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.3653.1 -3.1 -1.6 FIG01212122: hypothetical protein compare
Xcc-8004.4439.1 -3.1 -10.6 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.4739.1 -3.1 -3.6 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.1205.1 -3.1 -2.3 hypothetical protein compare
Xcc-8004.1053.1 -3.0 -6.5 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.1058.1 -3.0 -2.3 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.1873.1 -3.0 -3.1 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.3324.1 -3.0 -4.0 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.3442.1 -3.0 -2.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1359.1 -3.0 -2.9 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.186.1 -2.9 -11.5 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Xcc-8004.1236.1 -2.9 -6.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.601.1 -2.9 -6.6 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.5352.1 -2.9 -2.1 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Xcc-8004.4373.1 -2.9 -3.4 LppC putative lipoprotein compare
Xcc-8004.4024.1 -2.9 -4.7 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.3433.1 -2.9 -7.7 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.846.1 -2.9 -2.2 Protein of unknown function DUF484 compare
Xcc-8004.2420.1 -2.9 -7.9 PHA synthase subunit compare
Xcc-8004.2319.1 -2.8 -3.6 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.5326.1 -2.8 -0.8 Mobile element protein compare
Xcc-8004.4025.1 -2.8 -12.1 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.4111.1 -2.8 -6.7 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase II (EC 2.5.1.54) compare
Xcc-8004.3395.1 -2.7 -1.7 Transcriptional regulator, GntR family compare
Xcc-8004.3313.1 -2.7 -3.5 LSU ribosomal protein L9p compare
Xcc-8004.4503.1 -2.7 -3.6 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.2954.1 -2.7 -13.0 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.2947.1 -2.6 -5.5 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.1056.1 -2.6 -3.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.3072.1 -2.6 -2.6 hypothetical protein compare
Xcc-8004.2653.1 -2.6 -4.0 hypothetical protein compare
Xcc-8004.1559.1 -2.5 -4.3 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Xcc-8004.504.1 -2.5 -7.3 8-amino-7-oxononanoate synthase (EC 2.3.1.47) compare
Xcc-8004.4428.1 -2.5 -1.5 General secretion pathway protein I compare
Xcc-8004.1615.1 -2.5 -1.1 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.608.1 -2.5 -5.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.968.1 -2.5 -9.5 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.4738.1 -2.5 -8.6 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.3788.1 -2.5 -2.9 Protein of unknown function DUF1428 compare
Xcc-8004.5019.1 -2.4 -1.2 FIG01210147: hypothetical protein compare
Xcc-8004.3696.1 -2.4 -3.2 hypothetical protein compare
Xcc-8004.2946.1 -2.4 -3.8 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.5133.1 -2.4 -1.0 FIG01212313: hypothetical protein compare
Xcc-8004.957.1 -2.4 -4.5 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.645.1 -2.4 -0.9 probable iron binding protein from the HesB_IscA_SufA family compare
Xcc-8004.4694.1 -2.4 -2.3 FIG01210824: hypothetical protein compare
Xcc-8004.1361.1 -2.4 -1.0 Probable component of the lipoprotein assembly complex (forms a complex with YaeT, YfgL, and NlpB) compare
Xcc-8004.1200.1 -2.4 -1.0 hypothetical protein compare
Xcc-8004.787.1 -2.4 -0.7 Rrf2 family transcriptional regulator, group III compare
Xcc-8004.2086.1 -2.4 -1.6 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.4514.1 -2.4 -10.8 Glycosyltransferase compare
Xcc-8004.270.1 -2.4 -5.7 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.4062.1 -2.4 -8.1 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Xcc-8004.3320.1 -2.4 -1.0 FIG01209869: hypothetical protein compare
Xcc-8004.3321.1 -2.3 -1.0 FIG01209847: hypothetical protein compare
Xcc-8004.17.1 -2.3 -4.0 Pyridoxine 5'-phosphate synthase (EC 2.6.99.2) compare
Xcc-8004.2957.1 -2.3 -6.8 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.1028.1 -2.3 -5.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.44.1 -2.3 -16.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.4039.1 -2.3 -2.6 Peptidyl-prolyl cis-trans isomerase PpiD (EC 5.2.1.8) compare
Xcc-8004.892.1 -2.3 -2.8 Coupling protein VirD4, ATPase required for T-DNA transfer compare
Xcc-8004.914.1 -2.3 -7.2 tail-specific protease compare
Xcc-8004.4844.1 -2.3 -0.7 FIG01210764: hypothetical protein compare
Xcc-8004.3362.1 -2.3 -3.8 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Xcc-8004.117.1 -2.3 -2.1 FIG042594: DUF1550 domain-containing protein compare
Xcc-8004.4982.1 -2.3 -1.5 Protein yjbJ compare
Xcc-8004.2356.1 -2.3 -3.8 Ribosomal large subunit pseudouridine synthase B (EC 4.2.1.70) compare
Xcc-8004.3873.1 -2.3 -2.3 FIG01212144: hypothetical protein compare
Xcc-8004.2537.1 -2.2 -3.7 Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) compare
Xcc-8004.3054.1 -2.2 -1.5 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.4441.1 -2.2 -2.1 Tyrosine recombinase XerD compare
Xcc-8004.3590.1 -2.2 -1.3 FIG01211013: hypothetical protein compare
Xcc-8004.130.1 -2.2 -4.8 hypothetical protein compare
Xcc-8004.1792.1 -2.2 -6.0 Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family compare
Xcc-8004.4398.1 -2.2 -5.4 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.93.1 -2.2 -1.9 FIG01211857: hypothetical protein compare
Xcc-8004.5363.1 -2.2 -2.2 Uncharacterized ABC transporter, ATP-binding protein YrbF compare
Xcc-8004.2266.1 -2.2 -1.5 FIG01211351: hypothetical protein compare
Xcc-8004.4700.1 -2.1 -1.9 FIG01210206: hypothetical protein compare
Xcc-8004.2399.1 -2.1 -3.2 FIG024214: Transcriptional regulator, AraC family compare
Xcc-8004.3346.1 -2.1 -1.4 hypothetical protein compare
Xcc-8004.5052.1 -2.1 -1.7 FIG01209941: hypothetical protein compare
Xcc-8004.3360.1 -2.1 -4.6 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Xcc-8004.623.1 -2.1 -1.1 Phosphoserine phosphatase compare
Xcc-8004.659.1 -2.1 -1.4 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.3310.1 -2.1 -4.3 Chromosome partition protein smc compare
Xcc-8004.4976.1 -2.1 -7.8 hypothetical protein compare
Xcc-8004.2215.1 -2.1 -0.7 hypothetical protein compare
Xcc-8004.5302.1 -2.1 -3.4 FIG039767: hypothetical protein compare
Xcc-8004.3726.1 -2.0 -1.3 Type III secretion bridge between inner and outermembrane lipoprotein (YscJ,HrcJ,EscJ, PscJ) compare
Xcc-8004.1871.1 -2.0 -3.2 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.3923.1 -2.0 -1.6 Short-chain dehydrogenase/reductase SDR compare
Xcc-8004.3676.1 -2.0 -2.5 Translation elongation factor LepA compare
Xcc-8004.4485.1 -2.0 -7.0 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.2943.1 -2.0 -3.1 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.3859.1 -2.0 -2.4 Two-component system regulatory protein compare
Xcc-8004.4322.1 -2.0 -1.3 nucleoprotein/polynucleotide-associated enzyme compare
Xcc-8004.4046.1 -2.0 -7.4 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.4732.1 -2.0 -1.5 Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) compare
Xcc-8004.2561.1 -2.0 -7.6 FIG01213638: hypothetical protein compare
Xcc-8004.4112.1 -2.0 -1.4 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.2694.1 -2.0 -4.7 hypothetical protein compare
Xcc-8004.1413.1 -2.0 -8.2 Outer membrane receptor proteins, mostly Fe transport compare
Xcc-8004.764.1 -2.0 -1.6 FIG01213873: hypothetical protein compare
Xcc-8004.1437.1 -2.0 -4.4 Kup system potassium uptake protein compare
Xcc-8004.1511.1 -1.9 -1.6 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.3794.1 -1.9 -1.4 Mobile element protein compare
Xcc-8004.715.1 -1.9 -2.9 RNA polymerase sigma factor compare
Xcc-8004.4501.1 -1.9 -4.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Xcc-8004.1495.1 -1.9 -1.8 FIG01212489: hypothetical protein compare
Xcc-8004.4891.1 -1.9 -5.2 Dolichol-phosphate mannosyltransferase compare
Xcc-8004.1057.1 -1.9 -6.8 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.3710.1 -1.9 -1.1 hypothetical protein compare
Xcc-8004.3862.1 -1.9 -5.2 Septum site-determining protein MinC compare
Xcc-8004.1009.1 -1.8 -1.8 Lysophospholipase L1 and related esterases compare
Xcc-8004.2497.1 -1.8 -0.8 Mobile element protein compare
Xcc-8004.4473.1 -1.8 -10.9 FIG01212400: hypothetical protein compare
Xcc-8004.742.1 -1.8 -2.3 Malonyl CoA acyl carrier protein transacylase (EC 2.3.1.39) compare
Xcc-8004.1658.1 -1.8 -5.2 hypothetical protein compare
Xcc-8004.1164.1 -1.8 -2.1 Transcriptional repressor, BlaI/MecI family compare
Xcc-8004.2412.1 -1.8 -9.2 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.1007.1 -1.8 -0.7 acetylxylan esterase compare
Xcc-8004.1023.1 -1.8 -5.0 Phosphate-specific outer membrane porin OprP ; Pyrophosphate-specific outer membrane porin OprO compare
Xcc-8004.4431.1 -1.8 -5.1 General secretion pathway protein F compare
Xcc-8004.559.1 -1.8 -1.8 FIG01213048: hypothetical protein compare
Xcc-8004.2228.1 -1.8 -5.6 Ubiquinol-cytochrome C reductase iron-sulfur subunit (EC 1.10.2.2) compare
Xcc-8004.2921.1 -1.7 -2.4 ferrous iron transport protein compare


Specific Phenotypes

For 8 genes in this experiment