Experiment set2IT083 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

1648 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

Group: in planta
Media:
Culturing: Xantho_ML2, flask, Aerobic, at 28 (C)
By: Alice on 6/26/18

Specific Phenotypes

For 8 genes in this experiment

SEED Subsystems

Subsystem #Specific
Chitin and N-acetylglucosamine utilization 1
Chorismate: Intermediate for synthesis of PAPA antibiotics, PABA, anthranilate, 3-hydroxyanthranilate and more. 1
Folate Biosynthesis 1
Fructooligosaccharides(FOS) and Raffinose Utilization 1
Inositol catabolism 1
Maltose and Maltodextrin Utilization 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
L-glutamine degradation I 1 1 1
4-hydroxybenzoate biosynthesis II (bacteria) 1 1 1
L-glutamate biosynthesis I 2 2 1
4-aminobenzoate biosynthesis I 2 2 1
ammonia assimilation cycle III 3 3 1
glutaminyl-tRNAgln biosynthesis via transamidation 4 3 1
L-asparagine biosynthesis III (tRNA-dependent) 4 3 1
acridone alkaloid biosynthesis 4 1 1
polybrominated phenols biosynthesis 4 1 1
4-hydroxy-2(1H)-quinolone biosynthesis 5 2 1
L-tryptophan biosynthesis 6 6 1
L-glutamate and L-glutamine biosynthesis 7 4 1
spongiadioxin C biosynthesis 7 2 1
L-citrulline biosynthesis 8 6 1
polybrominated dihydroxylated diphenyl ethers biosynthesis 8 2 1
ubiquinol-8 biosynthesis (late decarboxylation) 9 8 1
p-HBAD biosynthesis 9 1 1
chloramphenicol biosynthesis 9 1 1
superpathway of tetrahydrofolate biosynthesis 10 8 1
superpathway of quinolone and alkylquinolone biosynthesis 10 2 1
superpathway of candicidin biosynthesis 11 4 1
superpathway of tetrahydrofolate biosynthesis and salvage 12 10 1
superpathway of ubiquinol-8 biosynthesis (early decarboxylation) 12 10 1
superpathway of L-citrulline metabolism 12 8 1
superpathway of L-tryptophan biosynthesis 13 13 1
tetrahydromethanopterin biosynthesis 14 3 1
superpathway of aromatic amino acid biosynthesis 18 18 1
superpathway of chorismate metabolism 59 41 3
superpathway of polybrominated aromatic compound biosynthesis 20 2 1
phenolphthiocerol biosynthesis 23 1 1