Experiment set2IT082 for Rahnella sp. WP5

Compare to:

D-Mannitol carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS14200 -5.2 -13.5 phosphoenolpyruvate carboxylase compare
EX31_RS22695 -5.0 -6.0 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS03695 -5.0 -5.9 3-isopropylmalate dehydratase small subunit compare
EX31_RS14215 -4.9 -18.0 cystathionine gamma-synthase compare
EX31_RS13275 -4.9 -11.4 diaminopimelate decarboxylase compare
EX31_RS14190 -4.9 -12.2 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS12515 -4.9 -23.1 glutamate synthase large subunit compare
EX31_RS12510 -4.8 -15.7 FAD-dependent oxidoreductase compare
EX31_RS03935 -4.8 -10.7 threonine synthase compare
EX31_RS15005 -4.8 -16.1 dihydroxy-acid dehydratase compare
EX31_RS15020 -4.8 -17.3 ketol-acid reductoisomerase compare
EX31_RS18530 -4.7 -11.3 leucine-responsive transcriptional regulator Lrp compare
EX31_RS20980 -4.7 -7.1 glutamate 5-kinase compare
EX31_RS03685 -4.6 -13.5 3-isopropylmalate dehydrogenase compare
EX31_RS14180 -4.6 -15.9 argininosuccinate lyase compare
EX31_RS04035 -4.6 -12.8 phosphoserine phosphatase compare
EX31_RS03830 -4.6 -16.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS14185 -4.5 -9.0 acetylglutamate kinase compare
EX31_RS13445 -4.5 -13.7 argininosuccinate synthase compare
EX31_RS03690 -4.5 -10.8 3-isopropylmalate dehydratase large subunit compare
EX31_RS11465 -4.4 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS16860 -4.4 -19.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS03945 -4.4 -21.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS16855 -4.4 -14.4 phosphoribosylamine--glycine ligase compare
EX31_RS13160 -4.4 -11.9 amino-acid N-acetyltransferase compare
EX31_RS20975 -4.3 -7.1 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS20180 -4.2 -4.0 phosphocarrier protein Hpr compare
EX31_RS09975 -4.2 -2.9 tryptophan synthase subunit beta compare
EX31_RS12400 -4.2 -2.9 RNA polymerase factor sigma-54 compare
EX31_RS12825 -4.1 -8.8 ornithine carbamoyltransferase compare
EX31_RS22620 -4.1 -5.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS15875 -4.1 -13.6 nitrogen regulation protein NR(II) compare
EX31_RS11735 -4.1 -7.3 homoserine O-succinyltransferase compare
EX31_RS07900 -4.1 -16.8 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS02520 -4.1 -2.8 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS03835 -4.1 -8.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS23415 -4.0 -7.7 citrate synthase compare
EX31_RS15010 -4.0 -16.0 threonine ammonia-lyase, biosynthetic compare
EX31_RS09970 -4.0 -7.6 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS07905 -4.0 -19.1 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS22750 -4.0 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS21895 -4.0 -17.6 phosphoribosylformylglycinamidine synthase compare
EX31_RS20185 -4.0 -3.8 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS05785 -3.9 -3.8 superoxide dismutase [Mn] compare
EX31_RS09980 -3.9 -4.6 tryptophan synthase subunit alpha compare
EX31_RS02690 -3.9 -6.4 pyrroline-5-carboxylate reductase compare
EX31_RS23245 -3.9 -17.1 asparagine synthase B compare
EX31_RS11460 -3.9 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS18095 -3.9 -4.6 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS15880 -3.8 -9.8 nitrogen regulation protein NR(I) compare
EX31_RS03940 -3.8 -12.1 homoserine kinase compare
EX31_RS19570 -3.8 -13.2 amidophosphoribosyltransferase compare
EX31_RS09965 -3.8 -5.8 anthranilate phosphoribosyltransferase compare
EX31_RS21470 -3.8 -10.3 phosphoglycerate dehydrogenase compare
EX31_RS03250 -3.8 -10.5 RNA polymerase-binding protein DksA compare
EX31_RS07585 -3.8 -8.8 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS20175 -3.7 -9.8 cysteine synthase A compare
EX31_RS09960 -3.7 -5.6 glutamine amidotransferase compare
EX31_RS05825 -3.7 -2.5 mannitol-1-phosphate 5-dehydrogenase compare
EX31_RS09580 -3.7 -2.5 flagellar motor switch protein FliN compare
EX31_RS14310 -3.7 -2.5 6-phosphofructokinase compare
EX31_RS20450 -3.7 -4.4 IMP dehydrogenase compare
EX31_RS07870 -3.7 -9.9 adenylyl-sulfate kinase compare
EX31_RS07895 -3.6 -10.9 phosphoadenylyl-sulfate reductase compare
EX31_RS11440 -3.5 -7.4 histidinol dehydrogenase compare
EX31_RS11470 -3.5 -3.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS09955 -3.5 -6.6 anthranilate synthase component 1 compare
EX31_RS22625 -3.5 -3.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS02515 -3.4 -3.3 PAS domain-containing protein compare
EX31_RS07875 -3.4 -19.9 sulfate adenylyltransferase subunit CysN compare
EX31_RS11455 -3.4 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS09890 -3.4 -10.2 HTH-type transcriptional regulator CysB compare
EX31_RS14500 -3.4 -11.5 orotate phosphoribosyltransferase compare
EX31_RS09855 -3.4 -5.5 orotidine-5'-phosphate decarboxylase compare
EX31_RS03680 -3.3 -14.5 2-isopropylmalate synthase compare
EX31_RS11450 -3.2 -8.1 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS24385 -3.1 -3.7 dihydroorotase compare
EX31_RS14205 -3.1 -12.4 methylenetetrahydrofolate reductase compare
EX31_RS12785 -3.1 -13.6 aspartate carbamoyltransferase compare
EX31_RS20495 -3.1 -9.1 outer membrane protein assembly factor BamB compare
EX31_RS18255 -3.0 -2.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS07590 -3.0 -2.1 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS03030 -2.8 -11.7 helix-turn-helix transcriptional regulator compare
EX31_RS03035 -2.8 -9.9 LysE family transporter compare
EX31_RS14340 -2.8 -1.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS12875 -2.7 -1.9 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS22250 -2.7 -3.2 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS13935 -2.7 -11.6 phosphoenolpyruvate synthase compare
EX31_RS07880 -2.7 -16.4 sulfate adenylyltransferase subunit CysD compare
EX31_RS08720 -2.7 -13.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS14335 -2.7 -1.8 serine O-acetyltransferase compare
EX31_RS11445 -2.6 -9.0 histidinol-phosphate transaminase compare
EX31_RS03775 -2.6 -4.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS05830 -2.6 -17.5 PTS mannitol transporter subunit IICBA conserved
EX31_RS22430 -2.6 -2.4 hemolysin expression modulator Hha compare
EX31_RS22245 -2.5 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS21400 -2.5 -4.0 transketolase compare
EX31_RS02530 -2.5 -4.4 ABC transporter ATP-binding protein compare
EX31_RS18540 -2.4 -1.7 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS25910 -2.4 -1.6 hypothetical protein compare
EX31_RS15870 -2.4 -3.2 glutamate--ammonia ligase compare
EX31_RS00625 -2.4 -2.1 YgdI/YgdR family lipoprotein compare
EX31_RS23440 -2.2 -2.9 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS25340 -2.2 -4.9 hypothetical protein compare
EX31_RS25140 -2.2 -3.1 AlpA family transcriptional regulator compare
EX31_RS03040 -2.1 -8.5 hypothetical protein compare
EX31_RS14620 -2.0 -2.2 SCP2 domain-containing protein compare
EX31_RS21850 -2.0 -2.6 pyridoxine 5'-phosphate synthase compare
EX31_RS02385 -1.9 -1.2 hypothetical protein compare
EX31_RS15555 -1.9 -3.3 amino acid ABC transporter ATP-binding protein compare
EX31_RS09470 -1.9 -3.2 flagella biosynthesis regulatory protein FliT compare
EX31_RS10100 -1.8 -2.6 two-component system response regulator RssB compare
EX31_RS06055 -1.8 -3.9 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS08150 -1.8 -10.9 inorganic triphosphatase compare
EX31_RS03480 -1.8 -2.1 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS07595 -1.8 -6.4 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS07955 -1.8 -12.1 GTP diphosphokinase compare
EX31_RS26040 -1.8 -1.6 hypothetical protein compare
EX31_RS07785 -1.7 -1.9 carbon storage regulator CsrA compare
EX31_RS06070 -1.7 -8.0 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS17835 -1.7 -1.6 PTS transporter subunit EIIB compare
EX31_RS13045 -1.6 -10.8 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS03400 -1.6 -4.7 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS14220 -1.6 -2.0 met regulon transcriptional regulator MetJ compare
EX31_RS04105 -1.6 -2.5 helix-turn-helix domain-containing protein compare
EX31_RS20925 -1.6 -1.9 hypothetical protein compare
EX31_RS05010 -1.6 -12.3 glycogen synthase GlgA compare
EX31_RS20735 -1.6 -4.0 exodeoxyribonuclease V subunit beta compare
EX31_RS11540 -1.6 -4.3 dCTP deaminase compare
EX31_RS03920 -1.6 -5.6 transaldolase compare
EX31_RS04630 -1.5 -9.4 aspartate aminotransferase family protein compare
EX31_RS07520 -1.5 -2.8 ornithine cyclodeaminase compare
EX31_RS11815 -1.5 -8.8 glucose-6-phosphate isomerase compare
EX31_RS07115 -1.5 -2.3 cysteine dioxygenase compare
EX31_RS25125 -1.5 -3.7 thr operon leader peptide compare
EX31_RS18110 -1.5 -6.1 FMNH2-dependent alkanesulfonate monooxygenase compare
EX31_RS05910 -1.4 -8.9 LacI family DNA-binding transcriptional regulator compare
EX31_RS07415 -1.4 -1.5 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS10035 -1.4 -1.8 cardiolipin synthase compare
EX31_RS23785 -1.4 -2.6 DUF262 domain-containing protein compare
EX31_RS06065 -1.4 -7.0 phosphate ABC transporter permease PstC compare
EX31_RS20530 -1.4 -5.8 nucleoside-diphosphate kinase compare
EX31_RS06580 -1.4 -3.0 LysR family transcriptional regulator compare
EX31_RS16325 -1.4 -3.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein compare
EX31_RS26065 -1.3 -2.2 IS630 family transposase compare
EX31_RS11435 -1.3 -4.4 ATP phosphoribosyltransferase compare
EX31_RS19655 -1.3 -4.1 beta-ketoacyl-ACP synthase I compare
EX31_RS04710 -1.3 -3.0 adenine-specific DNA-methyltransferase compare
EX31_RS00010 -1.3 -1.2 type II toxin-antitoxin system HipA family toxin compare
EX31_RS19610 -1.3 -6.0 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS00920 -1.3 -1.4 DUF1493 family protein compare
EX31_RS16845 -1.3 -3.3 DNA-binding protein HU-alpha compare
EX31_RS02390 -1.3 -2.0 steroid Delta-isomerase compare
EX31_RS19600 -1.3 -5.5 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS18525 -1.3 -2.7 DNA translocase FtsK compare
EX31_RS25095 -1.3 -2.0 hypothetical protein compare
EX31_RS25365 -1.2 -0.9 50S ribosomal protein L31 compare
EX31_RS07440 -1.2 -1.9 urea carboxylase-associated family protein compare
EX31_RS03665 -1.2 -9.9 acetolactate synthase 3 large subunit compare
EX31_RS10115 -1.2 -6.3 formyltetrahydrofolate deformylase compare
EX31_RS24745 -1.2 -2.5 hypothetical protein compare
EX31_RS09350 -1.2 -2.5 ATP-binding cassette domain-containing protein compare
EX31_RS08535 -1.2 -2.4 30S ribosome-binding factor RbfA compare
EX31_RS07555 -1.1 -2.2 glucose 1-dehydrogenase compare
EX31_RS18105 -1.1 -5.3 sulfonate ABC transporter substrate-binding protein compare
EX31_RS05270 -1.1 -3.7 carbonic anhydrase compare
EX31_RS03660 -1.1 -7.4 acetolactate synthase small subunit compare
EX31_RS06140 -1.1 -7.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS22690 -1.1 -5.6 phosphoribosylglycinamide formyltransferase compare
EX31_RS04725 -1.1 -2.9 shikimate kinase AroK compare
EX31_RS00490 -1.1 -2.4 paraquat-inducible protein A compare
EX31_RS06795 -1.1 -3.0 ABC transporter ATP-binding protein compare
EX31_RS18145 -1.1 -4.7 aspartate/tyrosine/aromatic aminotransferase compare
EX31_RS03645 -1.0 -2.0 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
EX31_RS20140 -1.0 -1.3 hypothetical protein compare
EX31_RS07750 -1.0 -6.7 glutamate--cysteine ligase compare
EX31_RS04645 -1.0 -0.7 DUF2559 family protein compare
EX31_RS15000 -1.0 -6.4 branched-chain amino acid transaminase compare
EX31_RS25595 -1.0 -1.1 hypothetical protein compare
EX31_RS20205 -1.0 -4.9 cysteine synthase CysM compare
EX31_RS20670 -1.0 -0.9 RNA chaperone/antiterminator CspA compare
EX31_RS25555 -1.0 -1.0 GpE family phage tail protein compare
EX31_RS15865 -1.0 -7.4 ribosome-dependent GTPase TypA compare
EX31_RS07885 -1.0 -5.5 uroporphyrinogen-III C-methyltransferase compare
EX31_RS18445 -1.0 -1.4 DUF2732 domain-containing protein compare
EX31_RS09390 -1.0 -2.9 phosphate starvation-inducible protein PhoH compare
EX31_RS03710 -1.0 -1.4 glucose uptake inhibitor SgrT compare
EX31_RS10955 -1.0 -1.9 AI-2E family transporter compare
EX31_RS22120 -1.0 -4.1 transcriptional regulator NrdR compare
EX31_RS19485 -1.0 -4.2 phosphate acetyltransferase compare
EX31_RS06675 -1.0 -2.5 cellulose biosynthesis protein BcsG compare
EX31_RS11215 -1.0 -2.2 TetR family transcriptional regulator compare
EX31_RS01970 -1.0 -1.2 hypothetical protein compare
EX31_RS24670 -1.0 -1.6 peptidoglycan editing factor PgeF compare
EX31_RS22740 -1.0 -5.0 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS08515 -1.0 -7.5 lipoprotein NlpI compare
EX31_RS18290 -0.9 -1.5 phage tail assembly protein compare
EX31_RS09985 -0.9 -2.8 BON domain-containing protein compare
EX31_RS07070 -0.9 -2.8 aldo/keto reductase compare
EX31_RS07380 -0.9 -1.5 redox-regulated ATPase YchF compare


Specific Phenotypes

For 9 genes in this experiment

For carbon source D-Mannitol in Rahnella sp. WP5

For carbon source D-Mannitol across organisms