Experiment set2IT082 for Pedobacter sp. GW460-11-11-14-LB5

Compare to:

Glycine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
CA265_RS14990 +5.1 45.7 amino acid transporter compare
CA265_RS03740 +3.9 13.0 hypothetical protein compare
CA265_RS20350 +3.4 20.6 gliding motility lipoprotein GldH compare
CA265_RS23155 +3.1 23.1 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CA265_RS21060 +2.9 16.1 hypothetical protein compare
CA265_RS10035 +2.6 12.8 transcriptional regulator compare
CA265_RS08135 +2.3 18.7 amidohydrolase compare
CA265_RS09335 +2.3 9.1 DUF4442 domain-containing protein compare
CA265_RS17145 +2.3 9.8 malate:quinone oxidoreductase compare
CA265_RS19575 +1.9 6.1 glycoside hydrolase compare
CA265_RS19945 +1.8 7.1 hypothetical protein compare
CA265_RS10600 +1.8 10.8 RNA polymerase subunit sigma-24 compare
CA265_RS21905 +1.8 11.0 hypothetical protein compare
CA265_RS23425 +1.8 6.6 N-acetylmuramic acid 6-phosphate etherase compare
CA265_RS15265 +1.8 12.7 TetR family transcriptional regulator compare
CA265_RS21000 +1.8 8.1 ribosome silencing factor compare
CA265_RS19940 +1.7 14.0 hypothetical protein compare
CA265_RS18990 +1.7 15.4 cell surface protein SprA compare
CA265_RS24720 +1.6 14.3 multidrug transporter compare
CA265_RS18115 +1.6 10.9 gliding motility protein GldN compare
CA265_RS23145 +1.6 6.8 hypothetical protein compare
CA265_RS21900 +1.6 13.7 two-component sensor histidine kinase compare
CA265_RS18225 +1.6 9.7 DNA-binding response regulator compare
CA265_RS06585 +1.6 8.9 hypothetical protein compare
CA265_RS18125 +1.5 8.7 gliding motility protein GldL compare
CA265_RS18130 +1.5 12.3 gliding motility-associated lipoprotein compare
CA265_RS03295 +1.5 11.8 gliding motility-associated ABC transporter substrate-binding protein GldG compare
CA265_RS19740 +1.5 5.6 gliding motility lipoprotein GldD compare
CA265_RS18140 +1.5 10.0 DUF4271 domain-containing protein compare
CA265_RS19380 +1.5 9.4 beta-carotene 15,15'-monooxygenase compare
CA265_RS14535 +1.5 4.1 DUF4783 domain-containing protein compare
CA265_RS23635 +1.5 13.1 gliding motility lipoprotein GldJ compare
CA265_RS23520 +1.5 10.8 phosphate ABC transporter substrate-binding protein compare
CA265_RS23985 +1.5 10.1 gliding motility lipoprotein GldB compare
CA265_RS18120 +1.5 11.6 gliding motility protein GldM compare
CA265_RS03595 +1.5 9.3 hydrolase compare
CA265_RS08085 +1.4 8.9 aminodeoxychorismate lyase compare
CA265_RS04330 +1.4 2.7 transcriptional regulator compare
CA265_RS23605 +1.4 6.8 alkaline phosphatase compare
CA265_RS25275 +1.4 7.9 TIGR00159 family protein compare
CA265_RS03290 +1.4 9.8 gliding motility-associated ABC transporter permease subunit GldF compare
CA265_RS01975 +1.4 4.1 cell division protein compare
CA265_RS15085 +1.4 8.8 hypothetical protein compare
CA265_RS17720 +1.3 11.0 hypothetical protein compare
CA265_RS06115 +1.3 7.8 DNA mismatch repair protein MutT compare
CA265_RS03260 +1.3 10.0 multidrug ABC transporter ATP-binding protein compare
CA265_RS23515 +1.3 6.3 hypothetical protein compare
CA265_RS23510 +1.3 7.8 energy transducer TonB compare
CA265_RS15330 +1.3 5.0 YebC/PmpR family DNA-binding transcriptional regulator compare
CA265_RS18090 +1.3 11.0 gliding motility protein compare
CA265_RS21565 +1.3 2.0 cold-shock protein compare
CA265_RS16005 +1.3 3.8 hypothetical protein compare
CA265_RS15070 +1.2 5.3 hypothetical protein compare
CA265_RS18780 +1.2 3.9 YicC family protein compare
CA265_RS09720 +1.2 7.7 transglycosylase compare
CA265_RS17685 +1.2 7.6 hypothetical protein compare
CA265_RS10470 +1.2 7.5 amidinotransferase compare
CA265_RS20785 +1.1 3.1 hypothetical protein compare
CA265_RS23505 +1.1 3.9 biopolymer transporter ExbD compare
CA265_RS11030 +1.1 2.3 twin-arginine translocase TatA/TatE family subunit compare
CA265_RS10475 +1.1 6.2 amidinotransferase compare
CA265_RS14825 +1.1 2.0 outer membrane protein assembly factor BamD compare
CA265_RS17710 +1.0 6.7 hypothetical protein compare
CA265_RS14415 +1.0 7.4 pseudouridine synthase compare
CA265_RS23525 +1.0 7.7 hypothetical protein compare
CA265_RS10000 +1.0 3.2 nitrite reductase small subunit compare
CA265_RS25235 +1.0 6.1 hypothetical protein compare
CA265_RS09390 +0.9 3.4 hypothetical protein compare
CA265_RS20750 +0.9 2.6 hypothetical protein compare
CA265_RS13225 +0.9 6.6 exonuclease compare
CA265_RS18770 +0.9 3.8 hypothetical protein compare
CA265_RS03600 +0.9 6.9 hypothetical protein compare
CA265_RS03115 +0.9 2.4 peroxiredoxin compare
CA265_RS23305 +0.9 1.6 hypothetical protein compare
CA265_RS17715 +0.9 8.5 hypothetical protein compare
CA265_RS18755 +0.9 2.7 beta-ketoacyl-[acyl-carrier-protein] synthase II compare
CA265_RS07595 +0.9 3.5 MerR family transcriptional regulator compare
CA265_RS02145 +0.9 6.8 1,4-alpha-glucan branching enzyme compare
CA265_RS01065 +0.9 2.9 hypothetical protein compare
CA265_RS19030 +0.9 4.7 hypothetical protein compare
CA265_RS15115 +0.8 4.0 porin compare
CA265_RS17555 +0.8 5.8 hypothetical protein compare
CA265_RS25355 +0.8 3.3 DUF2807 domain-containing protein compare
CA265_RS20980 +0.8 4.7 6-phosphofructokinase compare
CA265_RS09035 +0.8 4.0 anti-anti-sigma factor compare
CA265_RS01205 +0.8 4.5 import component protein compare
CA265_RS20790 +0.8 3.1 hypothetical protein compare
CA265_RS06120 +0.8 4.3 UDP-glucose--hexose-1-phosphate uridylyltransferase (EC 2.7.7.12) (from data) compare
CA265_RS19990 +0.8 1.5 YtxH domain-containing protein compare
CA265_RS16295 +0.8 6.4 LacI family transcriptional regulator compare
CA265_RS17705 +0.8 6.1 hypothetical protein compare
CA265_RS02965 +0.8 4.0 hypothetical protein compare
CA265_RS07460 +0.8 3.1 deoxynucleoside kinase compare
CA265_RS07625 +0.8 3.9 hypothetical protein compare
CA265_RS20745 +0.8 2.7 conjugative transposon protein TraK compare
CA265_RS01320 +0.8 2.8 hypothetical protein compare
CA265_RS15335 +0.7 4.6 NAD-dependent epimerase compare
CA265_RS23955 +0.7 4.4 glycosyl transferase family 4 compare
CA265_RS18745 +0.7 1.1 hypothetical protein compare
CA265_RS09375 +0.7 3.6 hypothetical protein compare
CA265_RS17585 +0.7 4.5 acetyl-CoA acetyltransferase compare
CA265_RS20375 +0.7 3.6 methyltransferase compare
CA265_RS20780 +0.7 3.3 hypothetical protein compare
CA265_RS23770 +0.7 5.8 hypothetical protein compare
CA265_RS08320 +0.7 4.3 DNA mismatch repair protein MutT compare
CA265_RS18400 +0.7 4.1 iron-sulfur cluster-binding protein compare
CA265_RS12875 +0.7 5.2 ABC-F family ATPase compare
CA265_RS14910 +0.7 4.9 ABC transporter ATP-binding protein compare
CA265_RS04885 +0.7 1.4 tRNA-Gly compare
CA265_RS01195 +0.7 3.0 hypothetical protein compare
CA265_RS12665 +0.7 1.4 cold-shock protein compare
CA265_RS10935 +0.7 3.6 DUF423 domain-containing protein compare
CA265_RS07610 +0.7 3.1 KTSC domain-containing protein compare
CA265_RS21715 +0.7 3.9 hypothetical protein compare
CA265_RS21740 +0.7 4.0 RNA polymerase sigma factor compare
CA265_RS04325 +0.7 1.5 hypothetical protein compare
CA265_RS01165 +0.7 1.3 hypothetical protein compare
CA265_RS21130 +0.7 5.4 Co2+/Mg2+ efflux protein ApaG compare
CA265_RS22620 +0.7 1.5 hypothetical protein compare
CA265_RS01200 +0.7 2.6 hypothetical protein compare
CA265_RS10390 +0.7 2.1 hypothetical protein compare
CA265_RS21975 +0.7 4.9 peptidase S41 compare
CA265_RS08110 +0.7 2.0 hypothetical protein compare
CA265_RS06930 +0.7 2.4 hypothetical protein compare
CA265_RS19360 +0.6 2.9 peptidylprolyl isomerase compare
CA265_RS03085 +0.6 3.8 hypothetical protein compare
CA265_RS18405 +0.6 5.0 dehydrogenase compare
CA265_RS23640 +0.6 4.9 hypothetical protein compare
CA265_RS08070 +0.6 1.4 tRNA-Ser compare
CA265_RS23045 +0.6 3.1 cold-shock protein compare
CA265_RS08770 +0.6 1.7 hypothetical protein compare
CA265_RS16515 +0.6 1.2 hypothetical protein compare
CA265_RS19980 +0.6 2.9 hypothetical protein compare
CA265_RS00940 +0.6 1.7 hypothetical protein compare
CA265_RS07590 +0.6 3.5 hypothetical protein compare
CA265_RS06315 +0.6 4.0 uridine kinase compare
CA265_RS15690 +0.6 3.6 NADPH-dependent FMN reductase compare
CA265_RS08060 +0.6 2.3 hypothetical protein compare
CA265_RS20320 +0.6 5.4 hypothetical protein compare
CA265_RS07735 +0.6 1.0 transcriptional regulator compare
CA265_RS17390 +0.6 2.3 PadR family transcriptional regulator compare
CA265_RS17575 +0.6 4.1 acyl-CoA dehydrogenase compare
CA265_RS04295 +0.6 0.8 transcriptional regulator compare
CA265_RS22950 +0.6 1.5 hypothetical protein compare
CA265_RS00040 +0.6 1.7 hypothetical protein compare
CA265_RS22145 +0.6 2.4 hypothetical protein compare
CA265_RS05215 +0.6 1.7 YfcE family phosphodiesterase compare
CA265_RS20275 +0.6 3.6 LD-carboxypeptidase compare
CA265_RS06720 +0.5 2.4 hypothetical protein compare
CA265_RS18945 +0.5 3.5 LacI family transcriptional regulator compare
CA265_RS16785 +0.5 0.9 50S ribosomal protein L17 compare
CA265_RS24195 +0.5 4.0 TetR family transcriptional regulator compare
CA265_RS20315 +0.5 4.5 hypothetical protein compare
CA265_RS00665 +0.5 1.6 lysine transporter LysE compare
CA265_RS23735 +0.5 1.6 alpha/beta hydrolase compare
CA265_RS25295 +0.5 3.2 DoxX family protein compare
CA265_RS09385 +0.5 1.6 hypothetical protein compare
CA265_RS25030 +0.5 1.9 hypothetical protein compare
CA265_RS04815 +0.5 2.3 hypothetical protein compare
CA265_RS17600 +0.5 3.1 hypothetical protein compare
CA265_RS19140 +0.5 1.4 tRNA-Ile compare
CA265_RS01875 +0.5 1.8 hypothetical protein compare
CA265_RS05620 +0.5 0.8 hypothetical protein compare
CA265_RS21865 +0.5 3.5 two-component sensor histidine kinase compare
CA265_RS13255 +0.5 2.8 leucine dehydrogenase compare
CA265_RS08500 +0.5 3.1 endonuclease compare
CA265_RS01035 +0.5 2.3 hypothetical protein compare
CA265_RS06110 +0.5 2.0 hypothetical protein compare
CA265_RS14950 +0.5 1.8 hypothetical protein compare
CA265_RS10905 +0.5 2.0 iron-dependent repressor compare
CA265_RS23235 +0.5 1.2 transcriptional regulator compare
CA265_RS16585 +0.5 1.6 hypothetical protein compare
CA265_RS09420 +0.5 1.1 hypothetical protein compare
CA265_RS10135 +0.5 3.0 hypothetical protein compare
CA265_RS02200 +0.5 2.2 NUDIX hydrolase compare
CA265_RS07980 +0.5 2.9 lipid carrier--UDP-N-acetylgalactosaminyltransferase compare
CA265_RS19640 +0.5 1.7 hypothetical protein compare
CA265_RS24025 +0.5 1.5 hypothetical protein compare
CA265_RS11455 +0.5 2.9 hypothetical protein compare
CA265_RS18810 +0.5 1.8 thioredoxin family protein compare
CA265_RS17760 +0.5 3.3 hypothetical protein compare
CA265_RS12720 +0.5 2.3 hypothetical protein compare
CA265_RS20670 +0.4 1.6 hypothetical protein compare
CA265_RS20775 +0.4 1.2 hypothetical protein compare
CA265_RS13695 +0.4 2.4 hypothetical protein compare
CA265_RS11670 +0.4 2.6 hypothetical protein compare
CA265_RS17590 +0.4 3.2 3-hydroxyacyl-CoA dehydrogenase compare
CA265_RS06775 +0.4 2.2 competence protein TfoX compare
CA265_RS10040 +0.4 1.3 hypothetical protein compare
CA265_RS00270 +0.4 0.9 hypothetical protein compare
CA265_RS19605 +0.4 2.5 serine hydrolase compare
CA265_RS03105 +0.4 1.1 hypothetical protein compare
CA265_RS15030 +0.4 2.0 PIN domain nuclease compare
CA265_RS09690 +0.4 1.4 hypothetical protein compare
CA265_RS06440 +0.4 1.3 hypothetical protein compare
CA265_RS12660 +0.4 2.7 hypothetical protein compare
CA265_RS19705 +0.4 1.9 tRNA-binding protein compare
CA265_RS08840 +0.4 1.3 hypothetical protein compare
CA265_RS14770 +0.4 1.4 hypothetical protein compare
CA265_RS15895 +0.4 1.8 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For nitrogen source Glycine in Pedobacter sp. GW460-11-11-14-LB5

For nitrogen source Glycine across organisms