Experiment set2IT082 for Pantoea sp. MT58

Compare to:

Uranyl Acetate Dihydrate 200 uM, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -5.8 -5.4 RNA polymerase-binding protein DksA compare
IAI47_13690 -5.0 -2.0 cell envelope integrity protein TolA compare
IAI47_10835 -5.0 -2.0 tRNA-Val compare
IAI47_05070 -4.7 -1.9 outer membrane protein assembly factor BamB compare
IAI47_13695 -4.7 -1.9 colicin uptake protein TolR compare
IAI47_17965 -4.5 -18.6 glucose-6-phosphate isomerase compare
IAI47_09040 -4.4 -4.5 NAD-dependent epimerase compare
IAI47_05275 -4.3 -8.4 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_07075 -4.3 -10.0 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_13685 -4.2 -4.7 Tol-Pal system protein TolB compare
IAI47_12645 -4.0 -9.6 porin OmpA compare
IAI47_17220 -3.9 -28.3 glutamate synthase large subunit compare
IAI47_17225 -3.8 -21.1 sulfite reductase subunit alpha compare
IAI47_07070 -3.8 -9.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_09175 -3.7 -15.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_09190 -3.7 -15.1 anthranilate synthase component 1 compare
IAI47_16205 -3.7 -11.0 threonine synthase compare
IAI47_09580 -3.5 -4.8 FNR family transcription factor compare
IAI47_00870 -3.5 -2.0 50S ribosomal protein L31 compare
IAI47_17185 -3.5 -7.5 RNA polymerase factor sigma-54 compare
IAI47_09180 -3.4 -14.5 anthranilate phosphoribosyltransferase compare
IAI47_00735 -3.4 -3.3 protein-export chaperone SecB compare
IAI47_14350 -3.4 -9.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_13770 -3.4 -13.1 citrate synthase compare
IAI47_00895 -3.3 -20.2 phosphoenolpyruvate carboxylase compare
IAI47_16210 -3.3 -12.9 homoserine kinase compare
IAI47_01035 -3.3 -17.9 dihydroxy-acid dehydratase compare
IAI47_06235 -3.3 -9.7 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_04120 -3.3 -19.9 GTP diphosphokinase compare
IAI47_00890 -3.3 -11.5 methylenetetrahydrofolate reductase compare
IAI47_01050 -3.3 -17.8 ketol-acid reductoisomerase compare
IAI47_10520 -3.3 -4.5 pyridoxamine 5'-phosphate oxidase compare
IAI47_07065 -3.3 -13.3 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_00780 -3.2 -3.8 6-phosphofructokinase compare
IAI47_07090 -3.2 -10.3 histidinol dehydrogenase compare
IAI47_08445 -3.2 -2.0 Holliday junction branch migration protein RuvA compare
IAI47_03975 -3.2 -14.5 amino-acid N-acetyltransferase compare
IAI47_09170 -3.2 -14.9 tryptophan synthase subunit beta compare
IAI47_07095 -3.2 -11.4 ATP phosphoribosyltransferase compare
IAI47_07165 -3.2 -3.6 exodeoxyribonuclease I compare
IAI47_07080 -3.2 -12.4 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_13900 -3.1 -16.2 asparagine synthase B compare
IAI47_00920 -3.1 -15.7 argininosuccinate lyase compare
IAI47_16120 -3.1 -12.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_12865 -3.1 -12.4 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_00880 -3.1 -14.8 cystathionine gamma-synthase compare
IAI47_07085 -3.1 -13.4 histidinol-phosphate transaminase compare
IAI47_11450 -3.1 -10.1 ankyrin repeat domain-containing protein compare
IAI47_07060 -3.1 -11.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_18040 -3.1 -17.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_15110 -3.1 -8.4 chromophore lyase compare
IAI47_15120 -3.1 -9.5 glutamate 5-kinase compare
IAI47_03725 -3.0 -10.0 phosphoglycerate dehydrogenase compare
IAI47_00915 -3.0 -15.2 argininosuccinate synthase compare
IAI47_16350 -3.0 -11.1 phosphoserine phosphatase compare
IAI47_16830 -3.0 -15.6 ornithine carbamoyltransferase compare
IAI47_03860 -2.9 -12.1 diaminopimelate decarboxylase compare
IAI47_16115 -2.9 -19.0 carbamoyl-phosphate synthase large subunit compare
IAI47_05180 -2.9 -13.0 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_00655 -2.9 -11.2 glycosyltransferase family 4 protein compare
IAI47_14945 -2.8 -3.4 pyrroline-5-carboxylate reductase compare
IAI47_15115 -2.8 -11.8 glutamate-5-semialdehyde dehydrogenase compare
IAI47_01030 -2.8 -15.2 branched-chain amino acid transaminase compare
IAI47_04930 -2.8 -17.3 phosphoribosylformylglycinamidine synthase compare
IAI47_01040 -2.8 -11.6 threonine ammonia-lyase, biosynthetic compare
IAI47_06245 -2.8 -4.7 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_16010 -2.8 -15.3 3-isopropylmalate dehydratase large subunit compare
IAI47_00905 -2.8 -11.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_05440 -2.8 -11.2 cysteine synthase A compare
IAI47_06980 -2.8 -5.8 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_09165 -2.8 -9.4 tryptophan synthase subunit alpha compare
IAI47_12215 -2.7 -11.6 dihydroorotase compare
IAI47_04895 -2.7 -5.1 pyridoxine 5'-phosphate synthase compare
IAI47_00465 -2.7 -3.2 ribosome-dependent GTPase TypA compare
IAI47_16080 -2.7 -10.3 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_18045 -2.6 -12.3 phosphoribosylamine--glycine ligase compare
IAI47_00910 -2.6 -10.0 acetylglutamate kinase compare
IAI47_06275 -2.6 -15.6 amidophosphoribosyltransferase compare
IAI47_16860 -2.6 -13.5 aspartate carbamoyltransferase compare
IAI47_18015 -2.6 -14.2 homoserine O-succinyltransferase compare
IAI47_09185 -2.6 -5.6 glutamine amidotransferase compare
IAI47_16005 -2.6 -12.1 3-isopropylmalate dehydrogenase compare
IAI47_18400 -2.6 -3.0 tyrosine recombinase XerC compare
IAI47_16000 -2.5 -14.4 2-isopropylmalate synthase compare
IAI47_09240 -2.5 -3.3 HTH-type transcriptional regulator CysB compare
IAI47_16215 -2.4 -14.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_12880 -2.4 -16.1 formate C-acetyltransferase compare
IAI47_10320 -2.4 -3.0 Rrf2 family transcriptional regulator compare
IAI47_16015 -2.4 -6.0 3-isopropylmalate dehydratase small subunit compare
IAI47_00300 -2.4 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_09275 -2.3 -9.1 orotidine-5'-phosphate decarboxylase compare
IAI47_00600 -2.3 -10.6 orotate phosphoribosyltransferase compare
IAI47_00460 -2.3 -2.7 glutamate--ammonia ligase compare
IAI47_12705 -2.3 -10.7 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_08085 -2.3 -5.8 helix-turn-helix domain-containing protein compare
IAI47_12915 -2.2 -9.5 leucine-responsive transcriptional regulator Lrp compare
IAI47_11310 -2.2 -5.2 redox-regulated ATPase YchF compare
IAI47_12885 -2.2 -9.1 pyruvate formate lyase 1-activating protein compare
IAI47_14355 -2.1 -9.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_18830 -2.1 -2.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_05425 -2.1 -5.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_06325 -2.1 -7.4 acetate kinase compare
IAI47_21765 -2.1 -2.4 YoeB-YefM toxin-antitoxin system antitoxin YefM compare
IAI47_09055 -2.1 -11.5 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_06355 -2.0 -10.2 transcriptional regulator LrhA compare
IAI47_03820 -1.9 -4.9 site-specific tyrosine recombinase XerD compare
IAI47_04410 -1.9 -11.4 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_04160 -1.9 -9.8 phosphoadenylyl-sulfate reductase compare
IAI47_00455 -1.9 -7.9 nitrogen regulation protein NR(II) compare
IAI47_09010 -1.8 -5.7 formyltetrahydrofolate deformylase compare
IAI47_16870 -1.8 -5.0 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_17005 -1.7 -7.7 polyribonucleotide nucleotidyltransferase compare
IAI47_05420 -1.7 -1.2 PTS glucose transporter subunit IIA compare
IAI47_06320 -1.7 -6.7 phosphate acetyltransferase compare
IAI47_08440 -1.7 -2.3 crossover junction endodeoxyribonuclease RuvC compare
IAI47_16190 -1.7 -4.9 molybdopterin adenylyltransferase compare
IAI47_13480 -1.6 -2.3 molybdopterin synthase sulfur carrier subunit compare
IAI47_07475 -1.6 -1.5 hypothetical protein compare
IAI47_13740 -1.6 -1.3 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase compare
IAI47_04265 -1.6 -8.1 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_12030 -1.6 -10.0 PTS glucose transporter subunit IIBC compare
IAI47_01180 -1.6 -2.2 prolyl oligopeptidase family serine peptidase compare
IAI47_13145 -1.5 -6.1 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_04750 -1.5 -2.8 hypothetical protein compare
IAI47_17020 -1.5 -4.2 30S ribosome-binding factor RbfA compare
IAI47_04270 -1.5 -6.1 respiratory nitrate reductase subunit gamma compare
IAI47_04260 -1.5 -9.9 nitrate reductase subunit beta compare
IAI47_16995 -1.4 -2.9 protein YrbN compare
IAI47_13475 -1.4 -4.0 molybdopterin synthase catalytic subunit MoaE compare
IAI47_01365 -1.4 -2.0 inorganic phosphate transporter PitA compare
IAI47_14470 -1.4 -2.8 YbaB/EbfC family nucleoid-associated protein compare
IAI47_03375 -1.4 -6.6 peptide chain release factor 3 compare
IAI47_04255 -1.4 -11.2 nitrate reductase subunit alpha compare
IAI47_08705 -1.4 -9.7 carboxy terminal-processing peptidase compare
IAI47_13700 -1.4 -2.9 Tol-Pal system protein TolQ compare
IAI47_11760 -1.3 -1.6 TonB-dependent siderophore receptor compare
IAI47_00410 -1.3 -7.9 molybdenum cofactor guanylyltransferase MobA compare
IAI47_15540 -1.3 -6.5 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_05155 -1.3 -9.6 polyphosphate kinase 1 compare
IAI47_13485 -1.3 -3.8 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_13140 -1.3 -6.3 molybdopterin molybdotransferase MoeA compare
IAI47_21780 -1.3 -2.9 hypothetical protein compare
IAI47_12110 -1.2 -2.7 ribonuclease E compare
IAI47_02090 -1.2 -2.8 elongation factor Tu compare
IAI47_04835 -1.2 -5.5 ATP-dependent RNA helicase SrmB compare
IAI47_09305 -1.1 -2.8 cyclic di-GMP phosphodiesterase compare
IAI47_02695 -1.1 -6.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_13495 -1.1 -4.7 GTP 3',8-cyclase MoaA compare
IAI47_01955 -1.1 -6.8 aspartate aminotransferase family protein compare
IAI47_06405 -1.1 -2.3 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_21680 -1.1 -2.7 hypothetical protein compare
IAI47_08450 -1.1 -2.9 Holliday junction branch migration DNA helicase RuvB compare
IAI47_00445 -1.1 -7.0 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_18530 -1.1 -2.4 thioredoxin TrxA compare
IAI47_05325 -1.0 -2.0 DUF1471 domain-containing protein compare
IAI47_08355 -1.0 -3.2 flagellar protein FlhE compare
IAI47_16520 -1.0 -6.9 hypothetical protein compare
IAI47_11935 -1.0 -8.2 two-component system sensor histidine kinase PhoQ compare
IAI47_08165 -1.0 -4.8 flagella biosynthesis regulatory protein FliZ compare
IAI47_19890 -1.0 -2.3 hypothetical protein compare
IAI47_18520 -1.0 -8.4 UDP-N-acetylglucosamine--undecaprenyl-phosphate N-acetylglucosaminephosphotransferase compare
IAI47_12875 -1.0 -5.6 formate transporter FocA compare
IAI47_07550 -1.0 -1.2 tRNA-Asn compare
IAI47_21035 -1.0 -2.1 TetR/AcrR family transcriptional regulator compare
IAI47_18410 -1.0 -2.9 diaminopimelate epimerase compare
IAI47_04870 -1.0 -3.8 elongation factor 4 compare
IAI47_07030 -1.0 -7.0 HAD family hydrolase compare
IAI47_17000 -1.0 -6.3 lipoprotein NlpI compare
IAI47_18435 -1.0 -7.5 uroporphyrinogen-III C-methyltransferase compare
IAI47_07175 -1.0 -5.9 FUSC family protein compare
IAI47_10840 -1.0 -2.8 pyruvate kinase PykF compare
IAI47_10925 -1.0 -2.4 EAL domain-containing protein compare
IAI47_19050 -1.0 -1.8 hypothetical protein compare
IAI47_17035 -1.0 -1.5 ribosome maturation factor RimP compare
IAI47_13885 -0.9 -1.5 N-acetylglucosamine-6-phosphate deacetylase compare
IAI47_19850 -0.9 -2.9 hypothetical protein compare
IAI47_06380 -0.9 -1.7 NADH-quinone oxidoreductase subunit NuoF compare
IAI47_03595 -0.9 -3.4 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_04155 -0.9 -5.9 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_01005 -0.9 -6.0 DUF413 domain-containing protein compare
IAI47_03615 -0.9 -4.6 glutathione synthase compare
IAI47_07790 -0.9 -2.4 ribose 1,5-bisphosphokinase compare
IAI47_09210 -0.9 -4.9 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_01000 -0.9 -7.1 HTH-type transcriptional regulator HdfR compare
IAI47_17900 -0.9 -1.3 glycerol-3-phosphate 1-O-acyltransferase PlsB compare
IAI47_12085 -0.9 -3.1 phosphate acyltransferase PlsX compare
IAI47_18240 -0.9 -2.0 NAD(P)H-flavin reductase compare
IAI47_00450 -0.9 -5.8 nitrogen regulation protein NR(I) compare
IAI47_04350 -0.9 -6.5 glutamate--cysteine ligase compare
IAI47_06390 -0.8 -1.5 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_19045 -0.8 -1.7 two-component-system connector protein YcgZ compare
IAI47_00900 -0.8 -5.7 acetylornithine deacetylase compare
IAI47_00755 -0.8 -5.4 envelope stress sensor histidine kinase CpxA compare
IAI47_18315 -0.8 -3.1 HTH-type transcriptional regulator MetR compare
IAI47_12570 -0.8 -0.9 tRNA-Ser compare
IAI47_07490 -0.8 -1.2 DNA-binding protein compare
IAI47_01740 -0.8 -1.8 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_08590 -0.8 -1.8 hypothetical protein compare
IAI47_10755 -0.8 -1.3 DUF1289 domain-containing protein compare
IAI47_04400 -0.7 -3.0 3-deoxy-7-phosphoheptulonate synthase compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in stress experiments

For stress Uranyl Acetate Dihydrate across organisms