Experiment set2IT081 for Pseudomonas fluorescens FW300-N2C3

Compare to:

m-Inositol carbon source

200 most important genes:

  gene name fitness t score description  
AO356_23200 -6.3 -4.4 rhizopine-binding protein conserved
AO356_23160 -6.1 -7.3 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) conserved
AO356_13405 -5.9 -7.1 methionine biosynthesis protein MetW compare
AO356_23190 -5.9 -5.8 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) conserved
AO356_12525 -5.6 -6.7 acetylglutamate kinase compare
AO356_21440 -5.5 -8.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_23180 -5.5 -3.8 xylose isomerase compare
AO356_23170 -5.5 -8.3 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) conserved
AO356_21405 -5.4 -5.2 3-isopropylmalate dehydratase compare
AO356_09520 -5.2 -3.6 phosphoribosyl-AMP cyclohydrolase compare
AO356_23165 -5.2 -6.2 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) conserved
AO356_18275 -5.2 -11.1 ornithine carbamoyltransferase compare
AO356_14435 -5.1 -6.1 anthranilate phosphoribosyltransferase compare
AO356_08635 -5.1 -8.6 ATP phosphoribosyltransferase regulatory subunit compare
AO356_06965 -5.1 -6.0 histidinol dehydrogenase compare
AO356_18325 -5.0 -12.2 argininosuccinate synthase compare
AO356_13410 -5.0 -10.2 homoserine O-acetyltransferase compare
AO356_09810 -5.0 -3.4 imidazole glycerol phosphate synthase subunit HisH compare
AO356_07005 -5.0 -3.4 ABC transporter ATP-binding protein compare
AO356_16175 -4.9 -5.9 acetolactate synthase 3 regulatory subunit compare
AO356_19090 -4.9 -3.4 phosphoribosylaminoimidazole synthetase compare
AO356_19060 -4.9 -15.9 (p)ppGpp synthetase compare
AO356_21465 -4.8 -3.3 amidophosphoribosyltransferase compare
AO356_23205 -4.8 -11.2 D-ribose transporter ATP-binding protein conserved
AO356_10915 -4.8 -10.7 tryptophan synthase subunit beta compare
AO356_09815 -4.8 -6.5 imidazoleglycerol-phosphate dehydratase compare
AO356_14430 -4.8 -9.6 anthranilate synthase compare
AO356_13085 -4.7 -10.1 N-acetylglutamate synthase compare
AO356_12020 -4.7 -12.6 pyruvate carboxylase subunit A compare
AO356_00555 -4.7 -11.3 sulfite reductase compare
AO356_14420 -4.7 -13.8 anthranilate synthase compare
AO356_23185 -4.6 -14.5 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase IolD (EC 3.7.1.22) (from data) conserved
AO356_21415 -4.6 -10.5 3-isopropylmalate dehydrogenase compare
AO356_22200 -4.6 -8.2 sirohydrochlorin ferrochelatase compare
AO356_19520 -4.6 -5.4 isochorismatase compare
AO356_09370 -4.5 -13.3 glutamate synthase compare
AO356_23210 -4.5 -13.2 ABC transporter conserved
AO356_09525 -4.5 -6.2 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_10910 -4.5 -9.6 tryptophan synthase subunit alpha compare
AO356_23175 -4.5 -6.1 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) conserved
AO356_09800 -4.4 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_16180 -4.4 -15.1 ketol-acid reductoisomerase compare
AO356_09375 -4.4 -22.3 glutamate synthase compare
AO356_16170 -4.4 -9.3 acetolactate synthase 3 catalytic subunit compare
AO356_20830 -4.3 -4.2 phosphoadenosine phosphosulfate reductase compare
AO356_12520 -4.3 -3.0 orotate phosphoribosyltransferase compare
AO356_13250 -4.3 -10.3 dihydroxy-acid dehydratase compare
AO356_13605 -4.3 -7.1 5,10-methylenetetrahydrofolate reductase compare
AO356_12780 -4.2 -8.5 argininosuccinate lyase compare
AO356_21400 -4.2 -8.0 isopropylmalate isomerase compare
AO356_14295 -4.2 -2.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_06550 -4.1 -12.2 2-isopropylmalate synthase compare
AO356_00560 -4.1 -2.8 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_06970 -4.0 -7.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_08735 -4.0 -14.0 phosphoserine phosphatase compare
AO356_12025 -4.0 -14.8 pyruvate carboxylase subunit B compare
AO356_02175 -3.9 -9.4 transaldolase compare
AO356_21330 -3.9 -11.3 aromatic amino acid aminotransferase compare
AO356_16870 -3.9 -13.7 benzoate transporter compare
AO356_10340 -3.9 -14.2 phosphoserine phosphatase compare
AO356_16095 -3.8 -9.6 molecular chaperone DnaK compare
AO356_16075 -3.8 -4.5 Fis family transcriptional regulator compare
AO356_14440 -3.7 -4.5 indole-3-glycerol-phosphate synthase compare
AO356_10300 -3.7 -6.1 3-phosphoglycerate dehydrogenase compare
AO356_01750 -3.6 -3.5 ATP-dependent Clp protease proteolytic subunit compare
AO356_12015 -3.6 -11.0 LysR family transcriptional regulator compare
AO356_21470 -3.6 -7.4 O-succinylhomoserine sulfhydrylase compare
AO356_06960 -3.6 -7.9 histidinol-phosphate aminotransferase compare
AO356_10920 -3.5 -8.9 LysR family transcriptional regulator compare
AO356_01745 -3.5 -4.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_19795 -3.4 -3.3 glycerol-3-phosphate dehydrogenase compare
AO356_18730 -3.4 -10.2 arginine N-succinyltransferase compare
AO356_12990 -3.4 -8.1 5-formyltetrahydrofolate cyclo-ligase compare
AO356_16050 -3.4 -2.3 glucose-6-phosphate isomerase compare
AO356_09795 -3.3 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
AO356_17950 -3.2 -9.8 histidine kinase compare
AO356_17520 -3.2 -2.2 phosphoribosylformylglycinamidine synthase compare
AO356_11610 -3.2 -2.2 glycerol acyltransferase compare
AO356_05670 -3.1 -3.7 recombinase RecA compare
AO356_18025 -3.1 -3.7 ATP-dependent DNA helicase RuvB compare
AO356_14135 -3.1 -14.2 biotin synthase compare
AO356_18020 -3.0 -4.5 ATP-dependent DNA helicase RuvA compare
AO356_24845 -2.9 -4.3 ATPase compare
AO356_27205 -2.9 -8.7 hypothetical protein compare
AO356_08235 -2.9 -9.6 histidine kinase compare
AO356_07495 -2.9 -5.1 molecular chaperone DnaJ compare
AO356_03180 -2.9 -6.0 CysB family transcriptional regulator compare
AO356_11315 -2.8 -1.9 shikimate dehydrogenase compare
AO356_19050 -2.7 -3.7 cysteine synthase compare
AO356_15815 -2.7 -2.6 gamma-glutamyl kinase compare
AO356_19045 -2.7 -12.3 chemotaxis protein CheY compare
AO356_20475 -2.6 -2.4 hypothetical protein compare
AO356_11025 -2.6 -6.7 transcriptional regulator PhoU compare
AO356_03800 -2.6 -3.0 histidine kinase compare
AO356_12380 -2.6 -8.5 ATP-dependent DNA helicase RecG compare
AO356_00880 -2.6 -2.9 integration host factor subunit alpha compare
AO356_27180 -2.5 -4.3 hypothetical protein compare
AO356_00355 -2.5 -7.6 chemotaxis protein CheY compare
AO356_27210 -2.5 -9.9 hypothetical protein compare
AO356_01555 -2.5 -8.9 acyl-CoA dehydrogenase compare
AO356_05225 -2.4 -5.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_10170 -2.4 -3.0 chemotaxis protein CheY compare
AO356_15165 -2.4 -3.2 protein cII compare
AO356_27215 -2.3 -3.9 hypothetical protein compare
AO356_16665 -2.3 -11.5 sulfate adenylyltransferase compare
AO356_02315 -2.2 -4.3 DNA topoisomerase I compare
AO356_16080 -2.2 -9.9 ATPase compare
AO356_27250 -2.2 -5.5 hypothetical protein compare
AO356_07915 -2.1 -3.8 exodeoxyribonuclease V subunit beta compare
AO356_19085 -2.1 -6.9 phosphoribosylglycinamide formyltransferase compare
AO356_09425 -2.1 -8.2 malate dehydrogenase compare
AO356_30345 -2.1 -5.9 IclR family transcriptional regulator compare
AO356_06995 -2.1 -6.2 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_20155 -2.1 -6.1 phosphate acyltransferase compare
AO356_16670 -2.0 -9.3 adenylylsulfate kinase compare
AO356_17830 -2.0 -6.0 pyruvate kinase compare
AO356_18775 -2.0 -2.2 aspartate kinase compare
AO356_17075 -2.0 -3.2 cytochrome C compare
AO356_07480 -1.9 -3.1 carbamoyl phosphate synthase large subunit compare
AO356_20175 -1.9 -2.5 3-oxoacyl-ACP synthase compare
AO356_06990 -1.9 -5.0 toluene tolerance protein compare
AO356_27230 -1.9 -4.9 hypothetical protein compare
AO356_22700 -1.9 -9.1 LOG family protein compare
AO356_10185 -1.8 -8.0 glutamate--cysteine ligase compare
AO356_04560 -1.8 -3.1 serine peptidase compare
AO356_16185 -1.8 -4.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_18735 -1.8 -5.0 arginine N-succinyltransferase compare
AO356_03070 -1.8 -8.7 histidine kinase compare
AO356_06685 -1.8 -2.0 preprotein translocase subunit YajC compare
AO356_06385 -1.7 -2.9 recombinase XerD compare
AO356_16070 -1.7 -5.7 poly(A) polymerase compare
AO356_26040 -1.7 -2.0 hypothetical protein compare
AO356_16850 -1.7 -7.2 serine hydroxymethyltransferase compare
AO356_08875 -1.7 -2.8 toluene tolerance protein compare
AO356_06050 -1.6 -10.2 protein-PII uridylyltransferase compare
AO356_19175 -1.6 -3.0 alpha-ribazole phosphatase compare
AO356_05160 -1.6 -6.9 glucose-6-phosphate dehydrogenase compare
AO356_15450 -1.6 -11.3 AMP nucleosidase compare
AO356_12375 -1.6 -8.7 histidine kinase compare
AO356_17070 -1.6 -2.5 cytochrome B compare
AO356_07910 -1.6 -2.1 exodeoxyribonuclease V subunit alpha compare
AO356_10330 -1.5 -9.8 threonine dehydratase compare
AO356_10075 -1.5 -5.7 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_00530 -1.5 -4.0 precorrin-4 C11-methyltransferase compare
AO356_14140 -1.5 -8.6 8-amino-7-oxononanoate synthase compare
AO356_08275 -1.5 -4.0 precorrin isomerase compare
AO356_06005 -1.5 -3.7 zinc metallopeptidase RseP compare
AO356_14155 -1.5 -6.5 dethiobiotin synthetase compare
AO356_18000 -1.5 -1.6 FmdB family transcriptional regulator compare
AO356_12725 -1.5 -4.0 recombinase XerC compare
AO356_19425 -1.4 -2.3 lipid A biosynthesis lauroyl acyltransferase compare
AO356_13685 -1.4 -2.2 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_19515 -1.4 -1.9 hypothetical protein compare
AO356_08640 -1.4 -4.0 membrane protease HflC compare
AO356_14505 -1.4 -2.5 peptidase M23 compare
AO356_06575 -1.4 -2.8 outer membrane protein assembly factor BamB compare
AO356_27170 -1.3 -3.6 XRE family transcriptional regulator compare
AO356_27240 -1.3 -3.1 hypothetical protein compare
AO356_02190 -1.3 -5.2 hypothetical protein compare
AO356_14540 -1.3 -2.0 biotin--protein ligase compare
AO356_23195 -1.3 -2.4 oxidoreductase compare
AO356_25535 -1.3 -2.4 hypothetical protein compare
AO356_09765 -1.3 -2.6 sulfurtransferase compare
AO356_03715 -1.2 -7.1 chemotaxis protein CheA compare
AO356_12635 -1.2 -5.6 XRE family transcriptional regulator compare
AO356_07195 -1.2 -4.2 GntR family transcriptional regulator compare
AO356_15420 -1.2 -3.6 hypothetical protein compare
AO356_10445 -1.2 -1.9 serine protease compare
AO356_07390 -1.2 -1.2 polyribonucleotide nucleotidyltransferase compare
AO356_08645 -1.2 -3.9 hypothetical protein compare
AO356_06690 -1.2 -2.8 queuine tRNA-ribosyltransferase compare
AO356_17505 -1.2 -3.9 DNA repair protein RecO compare
AO356_04330 -1.2 -3.2 allophanate hydrolase compare
AO356_14075 -1.1 -2.0 amino acid ABC transporter substrate-binding protein compare
AO356_21410 -1.1 -2.3 SAM-dependent methyltransferase compare
AO356_03365 -1.1 -3.6 UDP-N-acetylglucosamine 2-epimerase compare
AO356_03725 -1.1 -2.7 histidine kinase compare
AO356_20880 -1.1 -2.2 3-methylitaconate isomerase compare
AO356_12895 -1.1 -9.3 polyphosphate kinase compare
AO356_19165 -1.1 -2.9 adenosylcobinamide kinase compare
AO356_22150 -1.1 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO356_07920 -1.1 -4.2 exodeoxyribonuclease V subunit gamma compare
AO356_19420 -1.1 -1.8 septum formation inhibitor compare
AO356_14100 -1.1 -5.3 malate synthase G compare
AO356_02580 -1.0 -3.3 GntR family transcriptional regulator compare
AO356_19135 -1.0 -3.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO356_17330 -1.0 -5.5 ATPase compare
AO356_08280 -1.0 -3.1 oxidoreductase compare
AO356_11680 -1.0 -1.5 chromosome partitioning protein ParB compare
AO356_13445 -1.0 -1.2 dihydroorotase compare
AO356_01740 -1.0 -2.3 DNA-binding protein compare
AO356_05895 -1.0 -4.0 protein-L-isoaspartate O-methyltransferase compare
AO356_03375 -1.0 -1.7 ExsB family protein compare
AO356_29115 -1.0 -2.6 Vanillate O-demethylase oxidoreductase compare
AO356_27220 -1.0 -4.8 hypothetical protein compare
AO356_12140 -1.0 -1.7 type VI secretion protein compare
AO356_13395 -1.0 -1.2 non-canonical purine NTP pyrophosphatase compare
AO356_18805 -0.9 -0.8 magnesium transporter compare
AO356_27245 -0.9 -1.0 hypothetical protein compare
AO356_13570 -0.9 -5.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source m-Inositol in Pseudomonas fluorescens FW300-N2C3

For carbon source m-Inositol across organisms