Experiment set2IT081 for Rahnella sp. WP5

Compare to:

Sodium D,L-Lactate carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS03695 -5.6 -5.5 3-isopropylmalate dehydratase small subunit compare
EX31_RS20980 -5.4 -3.7 glutamate 5-kinase compare
EX31_RS14185 -5.1 -7.0 acetylglutamate kinase compare
EX31_RS12510 -5.0 -13.8 FAD-dependent oxidoreductase compare
EX31_RS14215 -5.0 -17.5 cystathionine gamma-synthase compare
EX31_RS14200 -4.9 -14.6 phosphoenolpyruvate carboxylase compare
EX31_RS03685 -4.8 -12.0 3-isopropylmalate dehydrogenase compare
EX31_RS14180 -4.8 -14.1 argininosuccinate lyase compare
EX31_RS15005 -4.8 -16.0 dihydroxy-acid dehydratase compare
EX31_RS12515 -4.6 -24.3 glutamate synthase large subunit compare
EX31_RS03940 -4.6 -9.8 homoserine kinase compare
EX31_RS15020 -4.6 -17.3 ketol-acid reductoisomerase compare
EX31_RS03830 -4.4 -16.1 carbamoyl-phosphate synthase large subunit compare
EX31_RS03935 -4.4 -11.8 threonine synthase compare
EX31_RS23415 -4.4 -5.2 citrate synthase compare
EX31_RS14190 -4.4 -13.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS14205 -4.3 -13.1 methylenetetrahydrofolate reductase compare
EX31_RS04035 -4.3 -13.8 phosphoserine phosphatase compare
EX31_RS11735 -4.2 -5.7 homoserine O-succinyltransferase compare
EX31_RS11465 -4.2 -6.9 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS20975 -4.2 -7.4 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS13445 -4.1 -14.8 argininosuccinate synthase compare
EX31_RS16860 -4.1 -20.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS03835 -4.1 -8.2 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS03250 -4.1 -9.7 RNA polymerase-binding protein DksA compare
EX31_RS21470 -4.1 -9.4 phosphoglycerate dehydrogenase compare
EX31_RS08670 -4.0 -11.9 class 1 fructose-bisphosphatase compare
EX31_RS23245 -3.9 -16.5 asparagine synthase B compare
EX31_RS03035 -3.9 -9.7 LysE family transporter compare
EX31_RS22695 -3.9 -9.0 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS02690 -3.9 -5.9 pyrroline-5-carboxylate reductase compare
EX31_RS22750 -3.9 -3.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS12825 -3.9 -8.6 ornithine carbamoyltransferase compare
EX31_RS09975 -3.8 -6.3 tryptophan synthase subunit beta compare
EX31_RS13275 -3.8 -12.8 diaminopimelate decarboxylase compare
EX31_RS03690 -3.8 -13.2 3-isopropylmalate dehydratase large subunit compare
EX31_RS11455 -3.8 -5.1 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS09855 -3.8 -5.6 orotidine-5'-phosphate decarboxylase compare
EX31_RS16855 -3.7 -15.7 phosphoribosylamine--glycine ligase compare
EX31_RS13160 -3.7 -13.1 amino-acid N-acetyltransferase compare
EX31_RS12400 -3.7 -4.4 RNA polymerase factor sigma-54 compare
EX31_RS14500 -3.7 -11.8 orotate phosphoribosyltransferase compare
EX31_RS00640 -3.7 -3.5 FMN-dependent L-lactate dehydrogenase LldD conserved
EX31_RS02520 -3.6 -3.5 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS21895 -3.6 -18.1 phosphoribosylformylglycinamidine synthase compare
EX31_RS08645 -3.5 -13.2 malate dehydrogenase compare
EX31_RS18095 -3.5 -6.2 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS03030 -3.5 -12.0 helix-turn-helix transcriptional regulator compare
EX31_RS13935 -3.5 -10.2 phosphoenolpyruvate synthase conserved
EX31_RS03655 -3.5 -10.1 catabolite repressor/activator compare
EX31_RS11460 -3.4 -4.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS22625 -3.4 -3.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS23435 -3.4 -4.6 succinate dehydrogenase iron-sulfur subunit compare
EX31_RS11470 -3.4 -4.0 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS22245 -3.4 -2.3 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS09980 -3.3 -6.2 tryptophan synthase subunit alpha compare
EX31_RS09040 -3.3 -18.7 acetate--CoA ligase compare
EX31_RS12785 -3.3 -13.2 aspartate carbamoyltransferase compare
EX31_RS19570 -3.3 -13.2 amidophosphoribosyltransferase compare
EX31_RS02530 -3.2 -3.8 ABC transporter ATP-binding protein compare
EX31_RS09970 -3.2 -9.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS18255 -3.2 -2.2 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS02515 -3.2 -3.7 PAS domain-containing protein compare
EX31_RS09965 -3.1 -7.6 anthranilate phosphoribosyltransferase compare
EX31_RS24385 -3.1 -3.7 dihydroorotase compare
EX31_RS09045 -3.1 -5.8 DUF485 domain-containing protein compare
EX31_RS23425 -3.0 -7.8 succinate dehydrogenase membrane anchor subunit compare
EX31_RS06585 -2.9 -2.4 DUF2501 domain-containing protein compare
EX31_RS09050 -2.8 -17.7 cation/acetate symporter ActP compare
EX31_RS07590 -2.8 -2.7 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS09960 -2.7 -7.0 glutamine amidotransferase compare
EX31_RS03945 -2.7 -18.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS22620 -2.7 -7.6 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS14340 -2.7 -1.8 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS23430 -2.7 -9.6 succinate dehydrogenase flavoprotein subunit compare
EX31_RS09955 -2.6 -8.8 anthranilate synthase component 1 compare
EX31_RS14335 -2.6 -1.8 serine O-acetyltransferase compare
EX31_RS23420 -2.6 -4.1 succinate dehydrogenase cytochrome b556 subunit compare
EX31_RS19655 -2.5 -3.8 beta-ketoacyl-ACP synthase I compare
EX31_RS15010 -2.5 -11.8 threonine ammonia-lyase, biosynthetic compare
EX31_RS23485 -2.5 -2.4 colicin uptake protein TolR compare
EX31_RS22250 -2.5 -4.1 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS03040 -2.5 -11.3 hypothetical protein compare
EX31_RS20450 -2.4 -6.6 IMP dehydrogenase compare
EX31_RS03790 -2.4 -3.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS15870 -2.3 -3.2 glutamate--ammonia ligase compare
EX31_RS19435 -2.3 -1.6 NADH-quinone oxidoreductase subunit A compare
EX31_RS09700 -2.3 -4.6 GlpM family protein compare
EX31_RS23440 -2.3 -2.6 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS04105 -2.2 -3.1 helix-turn-helix domain-containing protein compare
EX31_RS07585 -2.2 -6.9 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS03480 -2.2 -1.5 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS20735 -2.2 -4.8 exodeoxyribonuclease V subunit beta compare
EX31_RS18540 -2.1 -2.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS13240 -2.1 -10.2 HTH-type transcriptional regulator GalR compare
EX31_RS19375 -2.1 -3.4 NADH-quinone oxidoreductase subunit NuoN compare
EX31_RS11110 -2.1 -2.6 RidA family protein compare
EX31_RS10505 -2.0 -4.7 fatty acid metabolism transcriptional regulator FadR compare
EX31_RS19390 -2.0 -4.0 NADH-quinone oxidoreductase subunit NuoK compare
EX31_RS20890 -2.0 -2.6 hypothetical protein compare
EX31_RS05335 -2.0 -10.5 transcriptional regulator EbgR compare
EX31_RS20190 -2.0 -1.8 PTS glucose transporter subunit IIA compare
EX31_RS20495 -1.9 -8.2 outer membrane protein assembly factor BamB compare
EX31_RS22690 -1.8 -9.1 phosphoribosylglycinamide formyltransferase compare
EX31_RS19420 -1.8 -2.9 NADH-quinone oxidoreductase subunit NuoE compare
EX31_RS13495 -1.8 -5.3 FAD assembly factor SdhE compare
EX31_RS03710 -1.7 -2.0 glucose uptake inhibitor SgrT compare
EX31_RS24540 -1.7 -4.4 NAD-dependent protein deacylase compare
EX31_RS10100 -1.7 -2.6 two-component system response regulator RssB compare
EX31_RS24140 -1.7 -1.4 DUF2594 family protein compare
EX31_RS09550 -1.7 -2.1 flagellar assembly protein FliH compare
EX31_RS23495 -1.7 -6.0 Tol-Pal system protein TolB compare
EX31_RS03010 -1.7 -6.7 helix-turn-helix domain-containing protein compare
EX31_RS19430 -1.6 -4.0 NADH-quinone oxidoreductase subunit B compare
EX31_RS24560 -1.6 -3.6 two-component system response regulator PhoP compare
EX31_RS07955 -1.6 -11.8 GTP diphosphokinase compare
EX31_RS11045 -1.6 -2.2 NADP-dependent oxidoreductase compare
EX31_RS23490 -1.5 -1.7 cell envelope integrity protein TolA compare
EX31_RS11445 -1.5 -7.0 histidinol-phosphate transaminase compare
EX31_RS01805 -1.5 -1.1 hypothetical protein compare
EX31_RS11690 -1.5 -3.0 dihydroneopterin triphosphate diphosphatase compare
EX31_RS08130 -1.5 -2.2 accessory factor UbiK family protein compare
EX31_RS18525 -1.5 -2.4 DNA translocase FtsK compare
EX31_RS22220 -1.5 -10.1 cytochrome o ubiquinol oxidase subunit II compare
EX31_RS22210 -1.5 -7.1 cytochrome o ubiquinol oxidase subunit III compare
EX31_RS19380 -1.5 -3.6 NADH-quinone oxidoreductase subunit M compare
EX31_RS09895 -1.5 -2.4 type I DNA topoisomerase compare
EX31_RS04710 -1.5 -3.1 adenine-specific DNA-methyltransferase compare
EX31_RS22680 -1.4 -5.8 polyphosphate kinase 1 compare
EX31_RS13775 -1.4 -2.5 transcriptional regulator SlyA compare
EX31_RS22200 -1.4 -9.1 protoheme IX farnesyltransferase compare
EX31_RS19405 -1.4 -2.8 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS17305 -1.4 -3.8 copper homeostasis protein CutC compare
EX31_RS20175 -1.4 -6.8 cysteine synthase A compare
EX31_RS15165 -1.4 -4.4 tyrosine recombinase XerC compare
EX31_RS19400 -1.3 -2.5 NADH-quinone oxidoreductase subunit NuoI compare
EX31_RS14620 -1.3 -1.9 SCP2 domain-containing protein compare
EX31_RS06000 -1.3 -3.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS09890 -1.3 -8.1 HTH-type transcriptional regulator CysB compare
EX31_RS09490 -1.3 -1.8 hypothetical protein compare
EX31_RS16845 -1.3 -2.5 DNA-binding protein HU-alpha compare
EX31_RS19425 -1.3 -3.7 NADH-quinone oxidoreductase subunit C/D compare
EX31_RS23825 -1.3 -6.4 D-lactate dehydrogenase compare
EX31_RS06690 -1.3 -2.4 hypothetical protein compare
EX31_RS10025 -1.3 -2.8 hypothetical protein compare
EX31_RS09655 -1.2 -1.2 membrane protein compare
EX31_RS22215 -1.2 -9.5 cytochrome o ubiquinol oxidase subunit I compare
EX31_RS08545 -1.2 -3.9 transcription termination/antitermination protein NusA compare
EX31_RS15375 -1.2 -1.9 nitrogen fixation protein NifW compare
EX31_RS01390 -1.2 -1.3 hypothetical protein compare
EX31_RS26025 -1.2 -1.3 conjugal transfer protein TraK compare
EX31_RS19385 -1.2 -2.8 NADH-quinone oxidoreductase subunit L compare
EX31_RS16720 -1.2 -4.0 helix-turn-helix domain-containing protein compare
EX31_RS24945 -1.2 -2.1 5S ribosomal RNA compare
EX31_RS23315 -1.2 -4.5 replication initiation negative regulator SeqA compare
EX31_RS19410 -1.1 -4.3 NADH-quinone oxidoreductase subunit NuoG compare
EX31_RS20185 -1.1 -4.5 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS19395 -1.1 -1.9 NADH-quinone oxidoreductase subunit J compare
EX31_RS09165 -1.1 -2.4 FadR family transcriptional regulator compare
EX31_RS13480 -1.1 -3.9 site-specific tyrosine recombinase XerD compare
EX31_RS22145 -1.1 -1.9 phosphatidylglycerophosphatase A compare
EX31_RS23455 -1.1 -2.2 succinate--CoA ligase subunit alpha compare
EX31_RS22205 -1.1 -6.4 cytochrome o ubiquinol oxidase subunit IV compare
EX31_RS02525 -1.1 -4.9 ABC transporter permease compare
EX31_RS20265 -1.1 -1.6 YaiI/YqxD family protein compare
EX31_RS09840 -1.1 -2.7 L-ribulose-5-phosphate 4-epimerase compare
EX31_RS25605 -1.1 -3.2 transposase compare
EX31_RS14730 -1.1 -0.9 DUF2756 domain-containing protein compare
EX31_RS10375 -1.1 -2.6 hypothetical protein compare
EX31_RS25415 -1.1 -0.9 helix-turn-helix domain-containing protein compare
EX31_RS12380 -1.1 -2.7 PTS phosphocarrier protein NPr compare
EX31_RS20530 -1.1 -4.6 nucleoside-diphosphate kinase compare
EX31_RS25105 -1.0 -1.3 DUF2474 domain-containing protein compare
EX31_RS07895 -1.0 -5.3 phosphoadenylyl-sulfate reductase compare
EX31_RS22740 -1.0 -6.0 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS18445 -1.0 -1.4 DUF2732 domain-containing protein compare
EX31_RS24115 -1.0 -1.7 tRNA-Lys compare
EX31_RS23880 -1.0 -2.1 DUF1471 domain-containing protein compare
EX31_RS18560 -1.0 -5.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
EX31_RS19280 -1.0 -3.8 transcriptional regulator RcsB compare
EX31_RS00635 -1.0 -1.2 hypothetical protein compare
EX31_RS09780 -1.0 -2.8 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase compare
EX31_RS12215 -0.9 -3.3 type II 3-dehydroquinate dehydratase compare
EX31_RS26065 -0.9 -1.7 IS630 family transposase compare
EX31_RS07240 -0.9 -2.9 ABC transporter permease compare
EX31_RS09075 -0.9 -1.8 type 1 fimbrial protein compare
EX31_RS07410 -0.9 -1.8 NAD(P)H-dependent oxidoreductase compare
EX31_RS21400 -0.9 -3.5 transketolase compare
EX31_RS09470 -0.9 -2.7 flagella biosynthesis regulatory protein FliT compare
EX31_RS06550 -0.9 -1.6 two-component system response regulator NarL compare
EX31_RS10725 -0.9 -1.6 plasmid maintenance protein CcdB compare
EX31_RS11845 -0.9 -0.7 repressor LexA compare
EX31_RS12485 -0.9 -7.1 cell division protein ZapE compare
EX31_RS25400 -0.8 -1.6 transcriptional regulator compare
EX31_RS09690 -0.8 -2.4 undecaprenyl-diphosphate phosphatase compare
EX31_RS01970 -0.8 -0.5 hypothetical protein compare
EX31_RS10975 -0.8 -2.4 DUF2891 domain-containing protein compare
EX31_RS06140 -0.8 -5.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS01615 -0.8 -1.3 DNA breaking-rejoining protein compare
EX31_RS13980 -0.8 -1.5 lipoate--protein ligase A compare


Specific Phenotypes

For 25 genes in this experiment

For carbon source Sodium D,L-Lactate in Rahnella sp. WP5

For carbon source Sodium D,L-Lactate across organisms