Experiment set2IT081 for Pantoea sp. MT58

Compare to:

Defined media control, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_15635 -5.9 -5.1 RNA polymerase-binding protein DksA compare
IAI47_13690 -5.1 -1.8 cell envelope integrity protein TolA compare
IAI47_13695 -4.7 -1.7 colicin uptake protein TolR compare
IAI47_04895 -3.9 -6.0 pyridoxine 5'-phosphate synthase compare
IAI47_21880 -3.8 -1.3 ParA family protein compare
IAI47_07090 -3.7 -11.4 histidinol dehydrogenase compare
IAI47_17965 -3.6 -15.2 glucose-6-phosphate isomerase compare
IAI47_11450 -3.5 -9.0 ankyrin repeat domain-containing protein compare
IAI47_17185 -3.4 -8.3 RNA polymerase factor sigma-54 compare
IAI47_09180 -3.4 -15.1 anthranilate phosphoribosyltransferase compare
IAI47_09040 -3.3 -3.2 NAD-dependent epimerase compare
IAI47_00895 -3.3 -18.0 phosphoenolpyruvate carboxylase compare
IAI47_17220 -3.2 -22.4 glutamate synthase large subunit compare
IAI47_15110 -3.1 -7.4 chromophore lyase compare
IAI47_07080 -3.1 -11.6 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_18045 -3.1 -12.5 phosphoribosylamine--glycine ligase compare
IAI47_11475 -3.1 -1.3 hypothetical protein compare
IAI47_17225 -3.1 -16.6 sulfite reductase subunit alpha compare
IAI47_17560 -3.1 -2.0 ROK family transcriptional regulator compare
IAI47_07060 -3.0 -11.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_16080 -3.0 -7.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_09190 -3.0 -13.1 anthranilate synthase component 1 compare
IAI47_07075 -3.0 -10.1 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_12885 -2.9 -9.3 pyruvate formate lyase 1-activating protein compare
IAI47_04120 -2.9 -16.3 GTP diphosphokinase compare
IAI47_13685 -2.8 -5.1 Tol-Pal system protein TolB compare
IAI47_14350 -2.8 -8.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_13770 -2.8 -13.1 citrate synthase compare
IAI47_18145 -2.7 -3.1 elongation factor Tu compare
IAI47_07065 -2.7 -10.0 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_12645 -2.7 -8.5 porin OmpA compare
IAI47_09175 -2.7 -11.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_16205 -2.7 -7.8 threonine synthase compare
IAI47_16120 -2.7 -10.1 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_09165 -2.6 -9.9 tryptophan synthase subunit alpha compare
IAI47_14945 -2.6 -4.0 pyrroline-5-carboxylate reductase compare
IAI47_05420 -2.6 -2.0 PTS glucose transporter subunit IIA compare
IAI47_09055 -2.6 -13.7 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_12915 -2.6 -10.1 leucine-responsive transcriptional regulator Lrp compare
IAI47_09240 -2.6 -3.5 HTH-type transcriptional regulator CysB compare
IAI47_09170 -2.6 -13.0 tryptophan synthase subunit beta compare
IAI47_07085 -2.6 -11.6 histidinol-phosphate transaminase compare
IAI47_07095 -2.5 -9.9 ATP phosphoribosyltransferase compare
IAI47_00910 -2.5 -9.0 acetylglutamate kinase compare
IAI47_16830 -2.5 -12.0 ornithine carbamoyltransferase compare
IAI47_05275 -2.5 -7.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_03975 -2.5 -12.6 amino-acid N-acetyltransferase compare
IAI47_12880 -2.5 -15.4 formate C-acetyltransferase compare
IAI47_16350 -2.5 -8.8 phosphoserine phosphatase compare
IAI47_01040 -2.5 -10.2 threonine ammonia-lyase, biosynthetic compare
IAI47_05180 -2.5 -12.0 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_00920 -2.4 -12.4 argininosuccinate lyase compare
IAI47_07070 -2.4 -6.0 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_15120 -2.4 -7.5 glutamate 5-kinase compare
IAI47_00300 -2.4 -1.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_01050 -2.4 -13.9 ketol-acid reductoisomerase compare
IAI47_00465 -2.4 -4.3 ribosome-dependent GTPase TypA compare
IAI47_15115 -2.4 -9.6 glutamate-5-semialdehyde dehydrogenase compare
IAI47_06245 -2.4 -4.6 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_20705 -2.3 -1.8 sulfur carrier protein ThiS compare
IAI47_06235 -2.3 -6.2 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_00780 -2.3 -4.9 6-phosphofructokinase compare
IAI47_05440 -2.3 -9.5 cysteine synthase A compare
IAI47_01030 -2.3 -12.7 branched-chain amino acid transaminase compare
IAI47_10520 -2.3 -3.9 pyridoxamine 5'-phosphate oxidase compare
IAI47_04930 -2.3 -13.6 phosphoribosylformylglycinamidine synthase compare
IAI47_00905 -2.3 -9.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_16390 -2.3 -1.1 tRNA-Leu compare
IAI47_00915 -2.3 -12.0 argininosuccinate synthase compare
IAI47_16115 -2.2 -14.2 carbamoyl-phosphate synthase large subunit compare
IAI47_09185 -2.2 -6.2 glutamine amidotransferase compare
IAI47_05425 -2.2 -5.7 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_16210 -2.2 -9.4 homoserine kinase compare
IAI47_16870 -2.2 -5.8 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_01035 -2.2 -12.9 dihydroxy-acid dehydratase compare
IAI47_06320 -2.2 -8.2 phosphate acetyltransferase compare
IAI47_06325 -2.2 -6.8 acetate kinase compare
IAI47_10725 -2.2 -2.5 DUF1656 domain-containing protein compare
IAI47_11760 -2.2 -2.5 TonB-dependent siderophore receptor compare
IAI47_18040 -2.2 -12.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_12215 -2.2 -10.6 dihydroorotase compare
IAI47_13900 -2.1 -11.4 asparagine synthase B compare
IAI47_11655 -2.1 -4.0 hypothetical protein compare
IAI47_04835 -2.1 -8.3 ATP-dependent RNA helicase SrmB compare
IAI47_03860 -2.1 -10.0 diaminopimelate decarboxylase compare
IAI47_14355 -2.1 -9.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_06275 -2.1 -12.5 amidophosphoribosyltransferase compare
IAI47_12865 -2.1 -9.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_17005 -2.1 -8.5 polyribonucleotide nucleotidyltransferase compare
IAI47_21655 -2.0 -1.0 LacI family DNA-binding transcriptional regulator compare
IAI47_05520 -1.9 -1.3 tRNA-Ala compare
IAI47_18015 -1.9 -10.4 homoserine O-succinyltransferase compare
IAI47_09010 -1.9 -5.9 formyltetrahydrofolate deformylase compare
IAI47_08085 -1.9 -4.8 helix-turn-helix domain-containing protein compare
IAI47_00880 -1.9 -10.6 cystathionine gamma-synthase compare
IAI47_16010 -1.9 -10.1 3-isopropylmalate dehydratase large subunit compare
IAI47_16005 -1.8 -8.2 3-isopropylmalate dehydrogenase compare
IAI47_13145 -1.8 -7.1 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_00460 -1.8 -2.0 glutamate--ammonia ligase compare
IAI47_03725 -1.7 -7.3 phosphoglycerate dehydrogenase compare
IAI47_00655 -1.7 -7.4 glycosyltransferase family 4 protein compare
IAI47_18530 -1.7 -2.5 thioredoxin TrxA compare
IAI47_15155 -1.7 -3.7 DUF943 family protein compare
IAI47_09275 -1.7 -6.0 orotidine-5'-phosphate decarboxylase compare
IAI47_12705 -1.7 -8.0 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_00890 -1.7 -7.3 methylenetetrahydrofolate reductase compare
IAI47_16860 -1.7 -9.0 aspartate carbamoyltransferase compare
IAI47_12110 -1.7 -3.9 ribonuclease E compare
IAI47_16000 -1.7 -10.5 2-isopropylmalate synthase compare
IAI47_16215 -1.6 -10.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_04410 -1.6 -10.0 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_06980 -1.6 -3.1 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_16015 -1.6 -5.6 3-isopropylmalate dehydratase small subunit compare
IAI47_13310 -1.5 -5.3 MerR family transcriptional regulator compare
IAI47_04265 -1.5 -7.2 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_09580 -1.5 -2.4 FNR family transcription factor compare
IAI47_13765 -1.5 -2.3 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_09305 -1.5 -3.0 cyclic di-GMP phosphodiesterase compare
IAI47_00600 -1.5 -6.8 orotate phosphoribosyltransferase compare
IAI47_02090 -1.5 -3.3 elongation factor Tu compare
IAI47_00455 -1.5 -7.1 nitrogen regulation protein NR(II) compare
IAI47_12030 -1.4 -8.5 PTS glucose transporter subunit IIBC compare
IAI47_18410 -1.4 -3.2 diaminopimelate epimerase compare
IAI47_13140 -1.4 -6.3 molybdopterin molybdotransferase MoeA compare
IAI47_03375 -1.4 -7.6 peptide chain release factor 3 compare
IAI47_16190 -1.4 -4.1 molybdopterin adenylyltransferase compare
IAI47_05070 -1.4 -1.0 outer membrane protein assembly factor BamB compare
IAI47_11420 -1.4 -1.8 hypothetical protein compare
IAI47_08440 -1.4 -1.4 crossover junction endodeoxyribonuclease RuvC compare
IAI47_01365 -1.4 -1.8 inorganic phosphate transporter PitA compare
IAI47_15970 -1.4 -1.6 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
IAI47_07165 -1.4 -1.9 exodeoxyribonuclease I compare
IAI47_04160 -1.3 -7.7 phosphoadenylyl-sulfate reductase compare
IAI47_04255 -1.3 -10.4 nitrate reductase subunit alpha compare
IAI47_13475 -1.3 -3.0 molybdopterin synthase catalytic subunit MoaE compare
IAI47_06395 -1.3 -1.1 NADH-quinone oxidoreductase subunit NuoI compare
IAI47_02040 -1.3 -5.2 peptidylprolyl isomerase compare
IAI47_21355 -1.3 -2.9 DUF3606 domain-containing protein compare
IAI47_06385 -1.3 -3.9 NADH-quinone oxidoreductase subunit NuoG compare
IAI47_00410 -1.2 -7.0 molybdenum cofactor guanylyltransferase MobA compare
IAI47_04270 -1.2 -6.1 respiratory nitrate reductase subunit gamma compare
IAI47_02695 -1.2 -6.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_15540 -1.2 -6.3 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_01955 -1.2 -6.6 aspartate aminotransferase family protein compare
IAI47_03855 -1.2 -4.9 LysR family transcriptional regulator compare
IAI47_13065 -1.2 -1.8 DUF1418 family protein compare
IAI47_21035 -1.1 -2.7 TetR/AcrR family transcriptional regulator compare
IAI47_00445 -1.1 -6.1 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_08445 -1.1 -1.0 Holliday junction branch migration protein RuvA compare
IAI47_03820 -1.1 -2.2 site-specific tyrosine recombinase XerD compare
IAI47_16095 -1.1 -2.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) ApaH compare
IAI47_13495 -1.1 -3.5 GTP 3',8-cyclase MoaA compare
IAI47_16995 -1.1 -1.6 protein YrbN compare
IAI47_03595 -1.1 -4.2 YggS family pyridoxal phosphate-dependent enzyme compare
IAI47_04260 -1.1 -7.3 nitrate reductase subunit beta compare
IAI47_17020 -1.1 -4.4 30S ribosome-binding factor RbfA compare
IAI47_12875 -1.1 -4.6 formate transporter FocA compare
IAI47_21675 -1.1 -3.1 helix-turn-helix domain-containing protein compare
IAI47_09125 -1.1 -3.6 YciI family protein compare
IAI47_17910 -1.0 -2.0 chorismate lyase compare
IAI47_10320 -1.0 -1.7 Rrf2 family transcriptional regulator compare
IAI47_01740 -1.0 -2.3 triphosphoribosyl-dephospho-CoA synthase compare
IAI47_09245 -1.0 -3.9 YmiA family putative membrane protein compare
IAI47_17120 -1.0 -1.5 BolA family iron metabolism protein IbaG compare
IAI47_00450 -1.0 -5.9 nitrogen regulation protein NR(I) compare
IAI47_09210 -1.0 -3.7 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_11415 -1.0 -1.0 hypothetical protein compare
IAI47_13485 -1.0 -2.9 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_06055 -1.0 -2.4 tRNA-Arg compare
IAI47_13480 -1.0 -1.3 molybdopterin synthase sulfur carrier subunit compare
IAI47_04425 -1.0 -4.6 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
IAI47_14940 -0.9 -1.1 YaiI/YqxD family protein compare
IAI47_00940 -0.9 -5.0 HTH-type transcriptional repressor FabR compare
IAI47_07350 -0.9 -0.8 hypothetical protein compare
IAI47_08300 -0.9 -5.8 chemotaxis protein CheA compare
IAI47_06365 -0.9 -2.5 NADH-quinone oxidoreductase subunit B compare
IAI47_13180 -0.9 -3.4 manganese-binding transcriptional regulator MntR compare
IAI47_08305 -0.9 -4.2 chemotaxis protein CheW compare
IAI47_18435 -0.9 -6.6 uroporphyrinogen-III C-methyltransferase compare
IAI47_05155 -0.9 -6.4 polyphosphate kinase 1 compare
IAI47_09895 -0.9 -2.7 GNAT family N-acetyltransferase compare
IAI47_04155 -0.9 -5.0 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_00870 -0.9 -0.6 50S ribosomal protein L31 compare
IAI47_18830 -0.9 -1.1 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_04350 -0.8 -6.0 glutamate--cysteine ligase compare
IAI47_10825 -0.8 -0.7 tRNA-Val compare
IAI47_01000 -0.8 -5.9 HTH-type transcriptional regulator HdfR compare
IAI47_19035 -0.8 -1.1 transcriptional regulator compare
IAI47_04870 -0.8 -2.7 elongation factor 4 compare
IAI47_11935 -0.8 -6.5 two-component system sensor histidine kinase PhoQ compare
IAI47_06790 -0.8 -3.3 alkyl hydroperoxide reductase subunit C compare
IAI47_11605 -0.8 -2.1 hypothetical protein compare
IAI47_10840 -0.8 -2.5 pyruvate kinase PykF compare
IAI47_21635 -0.8 -3.2 hypothetical protein compare
IAI47_00835 -0.8 -1.6 cell division protein ZapB compare
IAI47_18315 -0.8 -2.8 HTH-type transcriptional regulator MetR compare
IAI47_04150 -0.8 -4.6 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
IAI47_08450 -0.8 -2.2 Holliday junction branch migration DNA helicase RuvB compare
IAI47_06355 -0.8 -3.9 transcriptional regulator LrhA compare
IAI47_00900 -0.8 -4.7 acetylornithine deacetylase compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in no stress control experiments

For no stress control Sodium nitrate across organisms