Experiment set2IT080 for Pseudomonas syringae pv. syringae B728a

Compare to:

epiphytic; Green bean

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -5.3 -2.9 anthranilate synthase, component II compare
Psyr_0827 -4.3 -5.0 pantothenate synthetase compare
Psyr_0557 -3.8 -6.1 phosphoserine phosphatase compare
Psyr_0531 -3.7 -2.5 LmbE-like protein compare
Psyr_2462 -3.6 -6.4 Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like:Nitrite and sulphite reductase 4Fe-4S region compare
Psyr_0033 -3.5 -3.4 tryptophan synthase, alpha chain compare
Psyr_4852 -3.5 -9.4 D-3-phosphoglycerate dehydrogenase compare
Psyr_1408 -3.4 -3.9 Holliday junction endonuclease RuvC compare
Psyr_1663 -3.3 -5.8 phosphoribosylanthranilate isomerase compare
Psyr_1668 -3.2 -8.2 amidophosphoribosyltransferase compare
Psyr_0529 -3.2 -5.3 Glycosyl transferase, group 1 compare
Psyr_4609 -3.2 -13.1 anthranilate synthase, component I compare
Psyr_3174 -3.1 -5.6 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_0034 -3.0 -4.1 tryptophan synthase, beta chain compare
Psyr_2347 -3.0 -5.2 hypothetical protein compare
Psyr_1269 -3.0 -4.0 phosphoribosylformylglycinamidine synthase compare
Psyr_4686 -3.0 -4.9 8-amino-7-oxononanoate synthase compare
Psyr_4687 -2.8 -7.2 biotin synthase compare
Psyr_4580 -2.8 -3.3 anthranilate phosphoribosyltransferase compare
Psyr_0377 -2.7 -7.5 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_4270 -2.6 -7.1 serine hydroxymethyltransferase compare
Psyr_0846 -2.6 -8.9 acetolactate synthase, large subunit compare
Psyr_1613 -2.5 -5.0 septum site-determining protein MinC compare
Psyr_4627 -2.5 -2.4 dimethyladenosine transferase compare
Psyr_0469 -2.4 -9.1 dihydroxyacid dehydratase compare
Psyr_4860 -2.4 -1.5 Integrase, catalytic region compare
Psyr_4786 -2.4 -1.5 hypothetical protein compare
Psyr_4893 -2.3 -1.7 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_4754 -2.3 -1.8 16S rRNA m(2)G-966 methyltransferase compare
Psyr_2461 -2.3 -3.5 Uncharacterized conserved protein UCP030820 compare
Psyr_0532 -2.3 -5.1 conserved hypothetical protein compare
Psyr_4684 -2.3 -3.0 biotin synthesis protein BioC compare
Psyr_0378 -2.2 -8.6 Glycosyl transferase, family 2 compare
Psyr_0383 -2.2 -1.9 Twin-arginine translocation protein TatB compare
Psyr_3202 -2.2 -2.5 NADH dehydrogenase subunit G compare
Psyr_4369 -2.2 -6.7 glutamate-5-semialdehyde dehydrogenase compare
Psyr_1983 -2.2 -4.5 3-isopropylmalate dehydratase, large subunit compare
Psyr_4143 -2.2 -2.4 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_0917 -2.1 -5.6 ABC-2 compare
Psyr_0831 -2.1 -2.5 Two-component response regulator CbrB compare
Psyr_2141 -2.1 -3.0 hypothetical protein compare
Psyr_3008 -2.1 -6.0 Undecaprenyl-diphosphatase compare
Psyr_5132 -2.0 -3.2 Glucose-inhibited division protein A subfamily compare
Psyr_2980 -1.9 -3.3 UDP-glucose pyrophosphorylase compare
Psyr_4940 -1.9 -2.2 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_0680 -1.9 -3.2 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_4991 -1.9 -1.8 hypothetical protein compare
Psyr_0918 -1.9 -8.9 ABC transporter compare
Psyr_1544 -1.9 -4.1 SirA-like protein compare
Psyr_4512 -1.9 -6.6 putative phage-related protein compare
Psyr_2077 -1.9 -5.0 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_3673 -1.9 -2.5 Phosphoglycerate/bisphosphoglycerate mutase compare
Psyr_0454 -1.8 -5.0 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_0847 -1.8 -5.1 acetolactate synthase, small subunit compare
Psyr_1373 -1.8 -1.7 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_3193 -1.8 -3.1 Transcription factor jumonji, jmjC compare
Psyr_2112 -1.7 -1.6 Protein with unknown function DUF469 compare
Psyr_3947 -1.7 -2.2 Methyltransferase, putative compare
Psyr_0385 -1.7 -3.0 phosphoribosyl-ATP pyrophosphatase compare
Psyr_4138 -1.7 -3.7 Toluene tolerance compare
Psyr_5133 -1.7 -3.1 tRNA modification GTPase trmE compare
Psyr_3597 -1.7 -1.2 ABC transporter compare
Psyr_4896 -1.6 -3.8 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_4132 -1.6 -6.6 histidinol phosphate aminotransferase apoenzyme compare
Psyr_3581 -1.6 -5.1 ribosomal large subunit pseudouridine synthase B compare
Psyr_1949 -1.6 -3.5 ABC-3 compare
Psyr_1317 -1.6 -1.8 conserved hypothetical protein compare
Psyr_4822 -1.6 -2.5 Helix-turn-helix, Fis-type:Nitrogen regulation protein NR(I) compare
Psyr_2088 -1.6 -2.1 2-methylaconitate cis-trans isomerase compare
Psyr_0976 -1.6 -3.7 Malate:quinone-oxidoreductase compare
Psyr_0983 -1.6 -4.2 Protein of unknown function DUF159 compare
Psyr_4894 -1.6 -4.2 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_4362 -1.6 -2.9 Rare lipoprotein A compare
Psyr_4407 -1.5 -2.6 phosphoribosylamine--glycine ligase compare
Psyr_0411 -1.5 -9.7 glutamate synthase (NADPH) large subunit compare
Psyr_0704 -1.5 -4.7 glutamate 5-kinase compare
Psyr_1308 -1.5 -2.8 Protein-glutamate methylesterase compare
Psyr_0951 -1.5 -2.9 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1251 -1.5 -3.0 quinoprotein compare
Psyr_3208 -1.5 -2.5 NADH dehydrogenase subunit M compare
Psyr_5065 -1.5 -6.7 ATP-dependent DNA helicase UvrD compare
Psyr_2562 -1.5 -2.3 hypothetical protein compare
Psyr_4408 -1.5 -5.5 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4622 -1.5 -3.9 Nucleotidyl transferase compare
Psyr_4842 -1.5 -5.3 Phosphoenolpyruvate-protein phosphotransferase compare
Psyr_4887 -1.5 -6.1 Peptidase S41A, C-terminal protease compare
Psyr_1748 -1.5 -5.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_4262 -1.5 -1.3 lipoprotein, putative compare
Psyr_2808 -1.4 -1.5 hypothetical protein compare
Psyr_4843 -1.4 -3.8 NUDIX hydrolase compare
Psyr_4897 -1.4 -2.4 imidazoleglycerol-phosphate dehydratase compare
Psyr_4683 -1.4 -2.5 dethiobiotin synthase compare
Psyr_1984 -1.4 -1.7 3-isopropylmalate dehydratase, small subunit compare
Psyr_0849 -1.4 -6.8 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_3886 -1.4 -1.8 methionyl-tRNA synthetase compare
Psyr_4278 -1.4 -2.0 regulatory protein, LuxR compare
Psyr_4460 -1.4 -1.6 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II compare
Psyr_0099 -1.3 -2.2 Conserved hypothetical protein compare
Psyr_3179 -1.3 -2.4 DNA translocase FtsK compare
Psyr_1120 -1.3 -5.4 glucose-6-phosphate 1-dehydrogenase compare
Psyr_1377 -1.3 -4.0 CinA, C-terminal compare
Psyr_2383 -1.3 -2.5 Protein of unknown function DUF72 compare
Psyr_4995 -1.3 -2.2 RHS protein compare
Psyr_3681 -1.3 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
Psyr_0025 -1.3 -3.0 shikimate dehydrogenase compare
Psyr_1615 -1.3 -2.2 Patatin compare
Psyr_0832 -1.3 -5.5 Two-component sensor kinase CbrA compare
Psyr_0919 -1.3 -7.8 Chromosome segregation ATPase-like protein compare
Psyr_1747 -1.3 -3.2 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_1158 -1.3 -3.1 Gluconate transporter compare
Psyr_1202 -1.2 -2.1 negative regulator of hrp expression HrpV compare
Psyr_1324 -1.2 -3.4 conserved hypothetical protein compare
Psyr_0528 -1.2 -1.7 Carbamoyltransferase compare
Psyr_2970 -1.2 -2.6 TPR repeat protein:TPR repeat protein compare
Psyr_1108 -1.2 -6.2 glyceraldehyde-3-phosphate dehydrogenase compare
Psyr_1933 -1.2 -2.8 hypothetical protein compare
Psyr_3934 -1.2 -1.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_0954 -1.2 -1.9 Protein of unknown function UPF0153 compare
Psyr_3135 -1.2 -1.6 transcriptional regulator, GntR family compare
Psyr_4183 -1.2 -1.2 protein translocase subunit secG compare
Psyr_2253 -1.2 -2.5 Phosphonate metabolism compare
Psyr_2540 -1.2 -1.6 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_2344 -1.2 -2.7 CDS compare
Psyr_0848 -1.2 -3.7 ketol-acid reductoisomerase compare
Psyr_4126 -1.2 -6.9 adenylylsulfate kinase / sulfate adenylyltransferase subunit 1 compare
Psyr_0014 -1.2 -2.4 lipid A biosynthesis acyltransferase compare
Psyr_1236 -1.2 -2.3 transcriptional regulator, BadM/Rrf2 family compare
Psyr_1379 -1.2 -1.9 Regulatory protein RecX compare
Psyr_4463 -1.2 -2.6 Protein of unknown function DUF193 compare
Psyr_4125 -1.2 -2.3 Protein of unknown function DUF1043 compare
Psyr_4567 -1.2 -3.5 Protein of unknown function UPF0075 compare
Psyr_4418 -1.1 -1.6 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_0167 -1.1 -1.9 hypothetical protein compare
Psyr_4128 -1.1 -5.2 sulfate adenylyltransferase subunit 2 compare
Psyr_2386 -1.1 -2.1 hypothetical protein compare
Psyr_3672 -1.1 -2.4 cobalamin-5'-phosphate synthase compare
Psyr_5129 -1.1 -3.0 chromosome segregation DNA-binding protein compare
Psyr_1667 -1.1 -3.6 Colicin V production protein compare
Psyr_3433 -1.1 -2.5 Protein-glutamate methylesterase compare
Psyr_3015 -1.1 -4.3 cobaltochelatase CobN subunit compare
Psyr_1985 -1.1 -4.7 3-isopropylmalate dehydrogenase compare
Psyr_4490 -1.0 -1.4 transcriptional regulator, DeoR family compare
Psyr_4455 -1.0 -1.6 conserved hypothetical protein compare
Psyr_1410 -1.0 -2.1 Holliday junction DNA helicase RuvB compare
Psyr_0571 -1.0 -2.4 tRNA isopentenyltransferase compare
Psyr_2534 -1.0 -3.0 Carboxymethylenebutenolidase compare
Psyr_4300 -1.0 -2.1 DNA polymerase III, epsilon subunit compare
Psyr_3637 -1.0 -6.2 Glycosyl transferase, family 4 compare
Psyr_1791 -1.0 -2.5 HAD-superfamily hydrolase, subfamily IA, variant 2 compare
Psyr_0549 -1.0 -1.2 Metallophosphoesterase compare
Psyr_4018 -1.0 -4.1 Formyltetrahydrofolate deformylase compare
Psyr_0817 -1.0 -2.6 N-acetylmuramoyl-L-alanine amidase, family 2 compare
Psyr_1669 -1.0 -3.8 O-succinylhomoserine sulfhydrylase compare
Psyr_3324 -1.0 -3.2 transcriptional regulator, TetR family compare
Psyr_2955 -1.0 -2.4 Surfeit locus 4-related protein compare
Psyr_3952 -1.0 -1.9 conserved hypothetical protein compare
Psyr_4242 -1.0 -4.8 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_0510 -1.0 -1.6 conserved hypothetical protein compare
Psyr_1973 -1.0 -1.7 Aspartate transaminase compare
Psyr_2991 -1.0 -3.6 GCN5-related N-acetyltransferase compare
Psyr_3661 -1.0 -2.6 Fumarate hydratase, class II compare
Psyr_4623 -1.0 -5.2 Aminoglycoside phosphotransferase compare
Psyr_4844 -1.0 -2.9 HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2 compare
Psyr_4133 -1.0 -3.5 histidinol dehydrogenase compare
Psyr_4416 -1.0 -2.1 precorrin-8X methylmutase compare
Psyr_0208 -1.0 -4.4 endoribonuclease L-PSP compare
Psyr_2557 -1.0 -1.3 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_1304 -1.0 -1.4 CheW-like protein compare
Psyr_4139 -0.9 -4.0 Mce4/Rv3499c/MTV023.06c protein compare
Psyr_0920 -0.9 -7.0 Glycosyl transferase, group 1 compare
Psyr_4134 -0.9 -3.5 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_1109 -0.9 -3.9 6-phosphogluconate dehydratase compare
Psyr_1162 -0.9 -2.3 conserved hypothetical protein compare
Psyr_0947 -0.9 -3.0 TPR repeat protein:TPR repeat protein compare
Psyr_2507 -0.9 -1.5 Endoribonuclease L-PSP compare
Psyr_1037 -0.9 -2.6 ribosomal subunit interface protein, putative compare
Psyr_3594 -0.9 -2.7 membrane protein-like protein compare
Psyr_4070 -0.9 -3.7 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1802 -0.9 -1.0 transcriptional regulator, AsnC family compare
Psyr_0915 -0.9 -5.4 NAD-dependent epimerase/dehydratase compare
Psyr_0487 -0.9 -2.0 glutathione synthase compare
Psyr_4671 -0.9 -2.4 coenzyme PQQ synthesis protein B compare
Psyr_3213 -0.9 -2.2 Propeptide, PepSY amd peptidase M4 compare
Psyr_0294 -0.9 -3.3 Exopolyphosphatase compare
Psyr_1910 -0.9 -2.9 VacJ-like lipoprotein compare
Psyr_2781 -0.9 -2.5 hypothetical protein compare
Psyr_RNA28 -0.9 -1.1 tRNA-Val compare
Psyr_3281 -0.9 -1.3 Glycoside hydrolase, family 3, N-terminal compare
Psyr_1507 -0.9 -2.3 hypothetical protein compare
Psyr_4316 -0.9 -1.5 conserved hypothetical protein compare
Psyr_4235 -0.9 -5.1 extracellular solute-binding protein, family 5 compare
Psyr_1614 -0.9 -2.4 lipid A biosynthesis acyltransferase compare
Psyr_3198 -0.9 -1.5 NADH dehydrogenase subunit B compare
Psyr_3636 -0.9 -5.3 Polysaccharide biosynthesis protein CapD compare
Psyr_1013 -0.9 -2.0 hypothetical protein compare
Psyr_2739 -0.9 -2.0 ThiJ/PfpI compare
Psyr_0474 -0.9 -4.5 homoserine O-acetyltransferase compare
Psyr_3555 -0.9 -1.0 aspartate kinase compare
Psyr_0838 -0.9 -1.7 Rieske [2Fe-2S] region compare
Psyr_3419 -0.9 -3.1 4Fe-4S ferredoxin, iron-sulfur binding protein compare


Specific Phenotypes

None in this experiment

For Pseudomonas syringae pv. syringae B728a in in planta experiments