Experiment set2IT080 for Rahnella sp. WP5

Compare to:

Sucrose carbon source

200 most important genes:

  gene name fitness t score description  
EX31_RS13275 -5.4 -8.3 diaminopimelate decarboxylase compare
EX31_RS12510 -5.3 -11.8 FAD-dependent oxidoreductase compare
EX31_RS14185 -5.2 -6.1 acetylglutamate kinase compare
EX31_RS14190 -5.1 -11.4 N-acetyl-gamma-glutamyl-phosphate reductase compare
EX31_RS15005 -5.0 -13.4 dihydroxy-acid dehydratase compare
EX31_RS03685 -5.0 -7.7 3-isopropylmalate dehydrogenase compare
EX31_RS14200 -5.0 -14.1 phosphoenolpyruvate carboxylase compare
EX31_RS12515 -4.9 -18.7 glutamate synthase large subunit compare
EX31_RS15020 -4.9 -14.0 ketol-acid reductoisomerase compare
EX31_RS14180 -4.8 -13.5 argininosuccinate lyase compare
EX31_RS02690 -4.8 -3.3 pyrroline-5-carboxylate reductase compare
EX31_RS13160 -4.7 -7.8 amino-acid N-acetyltransferase compare
EX31_RS03940 -4.6 -8.3 homoserine kinase compare
EX31_RS03935 -4.6 -8.9 threonine synthase compare
EX31_RS04035 -4.6 -9.8 phosphoserine phosphatase compare
EX31_RS03830 -4.5 -14.0 carbamoyl-phosphate synthase large subunit compare
EX31_RS22620 -4.5 -3.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
EX31_RS14215 -4.5 -18.9 cystathionine gamma-synthase compare
EX31_RS16855 -4.4 -12.7 phosphoribosylamine--glycine ligase compare
EX31_RS03690 -4.4 -9.4 3-isopropylmalate dehydratase large subunit compare
EX31_RS20975 -4.4 -6.0 glutamate-5-semialdehyde dehydrogenase compare
EX31_RS13445 -4.4 -11.9 argininosuccinate synthase compare
EX31_RS16860 -4.4 -16.2 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
EX31_RS15880 -4.3 -7.8 nitrogen regulation protein NR(I) compare
EX31_RS22695 -4.3 -7.1 phosphoribosylformylglycinamidine cyclo-ligase compare
EX31_RS11440 -4.2 -2.9 histidinol dehydrogenase compare
EX31_RS11465 -4.2 -4.1 imidazole glycerol phosphate synthase subunit HisF compare
EX31_RS07585 -4.2 -5.7 bifunctional chorismate mutase/prephenate dehydratase compare
EX31_RS03945 -4.2 -20.0 bifunctional aspartate kinase/homoserine dehydrogenase I compare
EX31_RS15875 -4.2 -13.5 nitrogen regulation protein NR(II) compare
EX31_RS18530 -4.1 -11.0 leucine-responsive transcriptional regulator Lrp compare
EX31_RS20980 -4.1 -6.8 glutamate 5-kinase compare
EX31_RS03680 -4.1 -12.6 2-isopropylmalate synthase compare
EX31_RS21470 -4.1 -7.3 phosphoglycerate dehydrogenase compare
EX31_RS23245 -4.1 -11.7 asparagine synthase B compare
EX31_RS03835 -4.0 -7.7 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
EX31_RS21895 -4.0 -14.6 phosphoribosylformylglycinamidine synthase compare
EX31_RS04925 -4.0 -3.8 Fe-S biogenesis protein NfuA compare
EX31_RS12825 -3.9 -7.9 ornithine carbamoyltransferase compare
EX31_RS09980 -3.9 -2.7 tryptophan synthase subunit alpha compare
EX31_RS09965 -3.8 -3.7 anthranilate phosphoribosyltransferase compare
EX31_RS02520 -3.8 -2.6 sigma-54-dependent Fis family transcriptional regulator compare
EX31_RS02530 -3.8 -2.6 ABC transporter ATP-binding protein compare
EX31_RS23415 -3.8 -6.7 citrate synthase compare
EX31_RS11735 -3.7 -8.2 homoserine O-succinyltransferase compare
EX31_RS11470 -3.7 -2.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
EX31_RS12400 -3.7 -3.5 RNA polymerase factor sigma-54 compare
EX31_RS08720 -3.6 -14.2 3'(2'),5'-bisphosphate nucleotidase CysQ compare
EX31_RS22625 -3.6 -2.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
EX31_RS11450 -3.6 -4.9 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
EX31_RS09975 -3.6 -4.9 tryptophan synthase subunit beta compare
EX31_RS20175 -3.6 -8.9 cysteine synthase A compare
EX31_RS09960 -3.6 -4.9 glutamine amidotransferase compare
EX31_RS03035 -3.6 -9.7 LysE family transporter compare
EX31_RS07905 -3.6 -17.9 NADPH-dependent assimilatory sulfite reductase flavoprotein subunit compare
EX31_RS11460 -3.6 -2.4 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
EX31_RS15010 -3.5 -14.7 threonine ammonia-lyase, biosynthetic compare
EX31_RS09890 -3.5 -7.5 HTH-type transcriptional regulator CysB compare
EX31_RS19570 -3.5 -12.0 amidophosphoribosyltransferase compare
EX31_RS03775 -3.5 -3.4 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
EX31_RS09970 -3.5 -7.0 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
EX31_RS03695 -3.5 -6.1 3-isopropylmalate dehydratase small subunit compare
EX31_RS14500 -3.4 -12.0 orotate phosphoribosyltransferase compare
EX31_RS11455 -3.4 -4.0 imidazole glycerol phosphate synthase subunit HisH compare
EX31_RS07900 -3.4 -15.7 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
EX31_RS02515 -3.3 -2.3 PAS domain-containing protein compare
EX31_RS20450 -3.3 -5.0 IMP dehydrogenase compare
EX31_RS22750 -3.3 -3.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
EX31_RS09955 -3.3 -4.5 anthranilate synthase component 1 compare
EX31_RS07870 -3.3 -8.3 adenylyl-sulfate kinase compare
EX31_RS24385 -3.2 -3.1 dihydroorotase compare
EX31_RS23500 -3.2 -4.2 peptidoglycan-associated lipoprotein Pal compare
EX31_RS20185 -3.1 -5.6 phosphoenolpyruvate-protein phosphotransferase PtsI compare
EX31_RS22245 -3.1 -2.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
EX31_RS05785 -3.1 -4.2 superoxide dismutase [Mn] compare
EX31_RS08745 -3.1 -2.1 50S ribosomal protein L9 compare
EX31_RS03030 -3.1 -11.0 helix-turn-helix transcriptional regulator compare
EX31_RS07895 -3.1 -10.2 phosphoadenylyl-sulfate reductase compare
EX31_RS11445 -3.0 -7.2 histidinol-phosphate transaminase compare
EX31_RS18255 -3.0 -2.0 3-phosphoserine/phosphohydroxythreonine transaminase compare
EX31_RS14310 -3.0 -4.5 6-phosphofructokinase compare
EX31_RS20190 -2.9 -2.0 PTS glucose transporter subunit IIA compare
EX31_RS07880 -2.9 -16.9 sulfate adenylyltransferase subunit CysD compare
EX31_RS07875 -2.9 -17.5 sulfate adenylyltransferase subunit CysN compare
EX31_RS21850 -2.9 -2.7 pyridoxine 5'-phosphate synthase compare
EX31_RS07590 -2.9 -2.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
EX31_RS20495 -2.8 -8.0 outer membrane protein assembly factor BamB compare
EX31_RS19610 -2.8 -6.7 4-phosphoerythronate dehydrogenase PdxB compare
EX31_RS08535 -2.6 -3.0 30S ribosome-binding factor RbfA compare
EX31_RS15870 -2.6 -1.8 glutamate--ammonia ligase compare
EX31_RS18095 -2.6 -6.5 quinone-dependent dihydroorotate dehydrogenase compare
EX31_RS14335 -2.5 -1.7 serine O-acetyltransferase compare
EX31_RS22250 -2.5 -3.0 ATP-dependent protease ATP-binding subunit ClpX compare
EX31_RS09855 -2.5 -4.6 orotidine-5'-phosphate decarboxylase compare
EX31_RS22145 -2.5 -2.8 phosphatidylglycerophosphatase A compare
EX31_RS26040 -2.4 -1.6 hypothetical protein compare
EX31_RS10180 -2.4 -1.5 type II 3-dehydroquinate dehydratase compare
EX31_RS09775 -2.3 -2.2 (4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase compare
EX31_RS01970 -2.2 -1.3 hypothetical protein compare
EX31_RS25365 -2.2 -1.5 50S ribosomal protein L31 compare
EX31_RS23485 -2.2 -2.5 colicin uptake protein TolR compare
EX31_RS16655 -2.2 -2.5 hypothetical protein compare
EX31_RS23440 -2.2 -2.1 2-oxoglutarate dehydrogenase E1 component compare
EX31_RS00425 -2.2 -6.9 sucrose-6-phosphate hydrolase conserved
EX31_RS19655 -2.1 -4.0 beta-ketoacyl-ACP synthase I compare
EX31_RS03400 -2.1 -4.4 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
EX31_RS06055 -2.1 -3.2 phosphate ABC transporter ATP-binding protein PstB compare
EX31_RS03710 -2.1 -1.9 glucose uptake inhibitor SgrT compare
EX31_RS14620 -2.1 -2.0 SCP2 domain-containing protein compare
EX31_RS14205 -2.1 -9.5 methylenetetrahydrofolate reductase compare
EX31_RS12785 -2.1 -9.5 aspartate carbamoyltransferase compare
EX31_RS07955 -2.1 -13.3 GTP diphosphokinase compare
EX31_RS03790 -2.1 -2.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
EX31_RS06660 -2.1 -3.5 arabinose operon transcriptional regulator AraC compare
EX31_RS08150 -2.0 -11.6 inorganic triphosphatase compare
EX31_RS18540 -2.0 -1.9 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
EX31_RS03040 -2.0 -9.6 hypothetical protein compare
EX31_RS22810 -2.0 -1.9 helix-turn-helix domain-containing protein compare
EX31_RS20890 -2.0 -2.1 hypothetical protein compare
EX31_RS03250 -2.0 -8.4 RNA polymerase-binding protein DksA compare
EX31_RS03480 -2.0 -2.6 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
EX31_RS01850 -2.0 -3.3 type VI secretion system contractile sheath small subunit compare
EX31_RS09580 -1.9 -1.7 flagellar motor switch protein FliN compare
EX31_RS07595 -1.9 -6.8 3-deoxy-7-phosphoheptulonate synthase compare
EX31_RS04630 -1.9 -10.5 aspartate aminotransferase family protein compare
EX31_RS04390 -1.8 -2.6 DNA polymerase III subunit chi compare
EX31_RS00430 -1.8 -5.4 PTS sucrose transporter subunit IIBC compare
EX31_RS02180 -1.7 -2.0 peptide-methionine (R)-S-oxide reductase MsrB compare
EX31_RS06065 -1.7 -7.3 phosphate ABC transporter permease PstC compare
EX31_RS16955 -1.7 -2.9 ABC transporter ATP-binding protein compare
EX31_RS11110 -1.7 -1.6 RidA family protein compare
EX31_RS09470 -1.6 -2.9 flagella biosynthesis regulatory protein FliT compare
EX31_RS25690 -1.6 -2.0 tyrosine-type recombinase/integrase compare
EX31_RS21190 -1.5 -3.2 ribonuclease HI compare
EX31_RS11190 -1.5 -3.8 hypothetical protein compare
EX31_RS18785 -1.5 -4.8 DUF2384 domain-containing protein compare
EX31_RS04105 -1.5 -2.1 helix-turn-helix domain-containing protein compare
EX31_RS12875 -1.5 -2.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
EX31_RS09360 -1.5 -1.8 ABC transporter permease compare
EX31_RS19205 -1.4 -2.6 50S ribosomal protein L25 compare
EX31_RS07885 -1.4 -7.4 uroporphyrinogen-III C-methyltransferase compare
EX31_RS23495 -1.4 -4.9 Tol-Pal system protein TolB compare
EX31_RS17285 -1.4 -3.1 carboxy-S-adenosyl-L-methionine synthase CmoA compare
EX31_RS01620 -1.4 -2.2 DUF2190 family protein compare
EX31_RS10115 -1.4 -6.4 formyltetrahydrofolate deformylase compare
EX31_RS20180 -1.4 -1.6 phosphocarrier protein Hpr compare
EX31_RS01915 -1.4 -2.5 hypothetical protein compare
EX31_RS06070 -1.4 -6.3 phosphate ABC transporter substrate-binding protein PstS compare
EX31_RS06140 -1.4 -8.2 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
EX31_RS13045 -1.4 -8.6 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
EX31_RS25295 -1.4 -1.0 GhoT/OrtT family toxin compare
EX31_RS25340 -1.3 -3.4 hypothetical protein compare
EX31_RS22740 -1.3 -7.2 4-hydroxy-tetrahydrodipicolinate synthase compare
EX31_RS07785 -1.3 -1.3 carbon storage regulator CsrA compare
EX31_RS22120 -1.3 -4.7 transcriptional regulator NrdR compare
EX31_RS10825 -1.3 -1.7 hypothetical protein compare
EX31_RS24390 -1.3 -1.9 antibiotic biosynthesis monooxygenase compare
EX31_RS02665 -1.3 -4.8 glutathione synthase compare
EX31_RS25025 -1.3 -1.8 DUF1272 domain-containing protein compare
EX31_RS22430 -1.3 -1.6 hemolysin expression modulator Hha compare
EX31_RS20530 -1.3 -5.3 nucleoside-diphosphate kinase compare
EX31_RS25300 -1.3 -0.9 YqaE/Pmp3 family membrane protein compare
EX31_RS11045 -1.3 -2.0 NADP-dependent oxidoreductase compare
EX31_RS18445 -1.3 -1.2 DUF2732 domain-containing protein compare
EX31_RS09490 -1.3 -1.4 hypothetical protein compare
EX31_RS15015 -1.3 -3.5 HTH-type transcriptional activator IlvY compare
EX31_RS11435 -1.3 -3.9 ATP phosphoribosyltransferase compare
EX31_RS10100 -1.3 -1.8 two-component system response regulator RssB compare
EX31_RS14220 -1.3 -2.6 met regulon transcriptional regulator MetJ compare
EX31_RS02995 -1.3 -3.6 hypothetical protein compare
EX31_RS01785 -1.2 -2.6 YfdQ family protein compare
EX31_RS19405 -1.2 -2.5 NADH-quinone oxidoreductase subunit NuoH compare
EX31_RS06000 -1.2 -3.7 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
EX31_RS10035 -1.2 -1.3 cardiolipin synthase compare
EX31_RS18535 -1.2 -3.6 thioredoxin-disulfide reductase compare
EX31_RS08515 -1.2 -9.1 lipoprotein NlpI compare
EX31_RS14340 -1.2 -1.5 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
EX31_RS03085 -1.2 -4.2 hypothetical protein compare
EX31_RS06060 -1.2 -2.9 phosphate ABC transporter permease PstA compare
EX31_RS23425 -1.2 -4.2 succinate dehydrogenase membrane anchor subunit compare
EX31_RS15155 -1.2 -1.7 diaminopimelate epimerase compare
EX31_RS12460 -1.2 -5.0 BolA family transcriptional regulator compare
EX31_RS19600 -1.1 -4.4 tRNA pseudouridine(38-40) synthase TruA compare
EX31_RS19780 -1.1 -4.6 tRNA-Arg compare
EX31_RS09700 -1.1 -2.4 GlpM family protein compare
EX31_RS09225 -1.1 -1.7 iron-containing alcohol dehydrogenase family protein compare
EX31_RS06340 -1.1 -0.8 thiol peroxidase compare
EX31_RS23125 -1.1 -1.5 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
EX31_RS09190 -1.1 -2.5 ABC transporter permease compare
EX31_RS07415 -1.1 -1.3 bifunctional diguanylate cyclase/phosphodiesterase compare
EX31_RS15000 -1.1 -6.4 branched-chain amino acid transaminase compare
EX31_RS16845 -1.1 -2.3 DNA-binding protein HU-alpha compare
EX31_RS06985 -1.1 -1.5 iron export ABC transporter permease subunit FetB compare
EX31_RS14320 -1.0 -1.6 envelope stress response regulator transcription factor CpxR compare
EX31_RS07750 -1.0 -7.0 glutamate--cysteine ligase compare
EX31_RS02625 -1.0 -1.6 hypothetical protein compare
EX31_RS05010 -1.0 -8.0 glycogen synthase GlgA compare
EX31_RS24270 -1.0 -2.6 hypothetical protein compare
EX31_RS07685 -1.0 -1.8 phage tail assembly protein compare
EX31_RS10585 -1.0 -2.6 septum site-determining protein MinD compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sucrose in Rahnella sp. WP5

For carbon source Sucrose across organisms