Experiment set2IT080 for Rahnella sp. WP5

Compare to:

Sucrose carbon source

200 most detrimental genes:

  gene name fitness t score description  
EX31_RS16350 +2.9 14.9 DsbA family protein compare
EX31_RS21020 +1.7 3.7 D-sedoheptulose 7-phosphate isomerase compare
EX31_RS09535 +1.6 2.6 flagellar hook-basal body complex protein FliE compare
EX31_RS16355 +1.5 4.1 hypothetical protein compare
EX31_RS10090 +1.5 4.3 NAD-dependent epimerase compare
EX31_RS07340 +1.5 1.9 stress-induced protein YchH compare
EX31_RS15095 +1.4 3.4 O-antigen assembly polymerase compare
EX31_RS08140 +1.4 3.4 bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE compare
EX31_RS01695 +1.4 2.7 RusA family crossover junction endodeoxyribonuclease compare
EX31_RS02920 +1.3 1.7 glycosyltransferase compare
EX31_RS18450 +1.3 1.8 hypothetical protein compare
EX31_RS14435 +1.2 7.5 glycosyltransferase family 4 protein compare
EX31_RS22270 +1.2 1.6 competence protein ComEA compare
EX31_RS09170 +1.2 1.9 ABC transporter ATP-binding protein compare
EX31_RS24140 +1.2 1.5 DUF2594 family protein compare
EX31_RS07135 +1.2 1.4 hypothetical protein compare
EX31_RS20935 +1.2 2.3 hypothetical protein compare
EX31_RS16615 +1.2 1.8 membrane protein compare
EX31_RS07285 +1.2 2.5 GNAT family N-acetyltransferase compare
EX31_RS25225 +1.1 2.9 hypothetical protein compare
EX31_RS11010 +1.1 1.8 DgsA anti-repressor MtfA compare
EX31_RS24600 +1.1 0.8 hypothetical protein compare
EX31_RS06235 +1.1 1.6 hypothetical protein compare
EX31_RS10835 +1.1 2.8 TolC family protein compare
EX31_RS14410 +1.1 9.6 glycosyltransferase family 9 protein compare
EX31_RS06680 +1.1 1.8 cellulose biosynthesis protein BcsF compare
EX31_RS15460 +1.1 2.1 hypothetical protein compare
EX31_RS01885 +1.1 1.5 type IV secretion protein Rhs compare
EX31_RS09080 +1.1 1.3 LysR family transcriptional regulator compare
EX31_RS09670 +1.0 1.7 bleomycin resistance protein compare
EX31_RS08270 +1.0 2.5 DUF2000 domain-containing protein compare
EX31_RS06585 +1.0 1.6 DUF2501 domain-containing protein compare
EX31_RS18090 +1.0 4.0 cell division protein ZapC compare
EX31_RS10660 +1.0 3.8 MFS transporter compare
EX31_RS02080 +1.0 2.3 FadR family transcriptional regulator compare
EX31_RS07535 +0.9 2.1 cytochrome b/b6 domain-containing protein compare
EX31_RS07360 +0.9 3.0 protease modulator HflC compare
EX31_RS10865 +0.9 2.1 hypothetical protein compare
EX31_RS14445 +0.9 4.6 glycosyltransferase family 2 protein compare
EX31_RS15655 +0.9 1.2 hypothetical protein compare
EX31_RS00910 +0.9 2.5 LysR family transcriptional regulator compare
EX31_RS07830 +0.9 4.1 murein hydrolase activator NlpD compare
EX31_RS01650 +0.9 2.3 hypothetical protein compare
EX31_RS14400 +0.8 2.8 ADP-heptose--LPS heptosyltransferase RfaF compare
EX31_RS20925 +0.8 1.5 hypothetical protein compare
EX31_RS12240 +0.8 2.2 rod shape-determining protein MreC compare
EX31_RS01590 +0.8 1.8 phage tail assembly protein T compare
EX31_RS14325 +0.8 5.6 envelope stress sensor histidine kinase CpxA compare
EX31_RS22300 +0.8 3.5 Lrp/AsnC family transcriptional regulator compare
EX31_RS06300 +0.8 2.9 asparaginase compare
EX31_RS03860 +0.8 1.7 FKBP-type peptidyl-prolyl cis-trans isomerase compare
EX31_RS09400 +0.8 1.9 deferrochelatase/peroxidase EfeB compare
EX31_RS01960 +0.8 2.0 DUF2931 family protein compare
EX31_RS26085 +0.8 1.2 alpha/beta hydrolase compare
EX31_RS12430 +0.8 6.2 calcium/sodium antiporter compare
EX31_RS04800 +0.8 5.4 two-component system response regulator OmpR compare
EX31_RS15085 +0.8 3.2 lipid III flippase WzxE compare
EX31_RS10340 +0.8 1.4 GNAT family N-acetyltransferase compare
EX31_RS07430 +0.8 2.0 transporter substrate-binding domain-containing protein compare
EX31_RS05245 +0.8 1.9 PTS sugar transporter subunit IIB compare
EX31_RS19320 +0.8 2.2 nicotinamide mononucleotide deamidase-related protein YfaY compare
EX31_RS10745 +0.7 2.5 chromate transporter compare
EX31_RS25245 +0.7 2.5 late control protein B compare
EX31_RS25895 +0.7 1.5 DinI-like family protein compare
EX31_RS15540 +0.7 0.9 SDR family oxidoreductase compare
EX31_RS16545 +0.7 2.3 PTS lactose/cellobiose transporter subunit IIA compare
EX31_RS14405 +0.7 1.2 lipopolysaccharide heptosyltransferase RfaC compare
EX31_RS17750 +0.7 2.4 glutathione S-transferase family protein compare
EX31_RS01595 +0.7 0.9 phage minor tail protein G compare
EX31_RS07000 +0.7 2.5 iron ABC transporter permease compare
EX31_RS25910 +0.7 1.1 hypothetical protein compare
EX31_RS14415 +0.7 3.9 sugar glycosyltransferase compare
EX31_RS07015 +0.7 1.4 xanthine dehydrogenase accessory protein XdhC compare
EX31_RS04295 +0.7 1.7 hypothetical protein compare
EX31_RS26025 +0.7 1.1 conjugal transfer protein TraK compare
EX31_RS14610 +0.7 1.7 twin-arginine translocase subunit TatE compare
EX31_RS11845 +0.7 0.7 repressor LexA compare
EX31_RS22715 +0.7 1.5 arsenate reductase (glutaredoxin) compare
EX31_RS02215 +0.7 2.2 isopentenyl-diphosphate Delta-isomerase compare
EX31_RS07540 +0.7 1.8 helix-turn-helix transcriptional regulator compare
EX31_RS10670 +0.7 5.3 murein DD-endopeptidase MepM compare
EX31_RS06600 +0.7 2.6 electron transport complex subunit RsxG compare
EX31_RS07080 +0.7 2.0 NCS2 family permease compare
EX31_RS07185 +0.7 2.6 mannosyl-3-phosphoglycerate phosphatase-related protein compare
EX31_RS06270 +0.7 1.6 aldo/keto reductase compare
EX31_RS06685 +0.7 3.4 cellulose biosynthesis protein BcsE compare
EX31_RS13980 +0.7 1.4 lipoate--protein ligase A compare
EX31_RS01135 +0.7 1.2 SDR family oxidoreductase compare
EX31_RS25720 +0.7 1.9 hypothetical protein compare
EX31_RS12660 +0.7 3.0 DedA family protein compare
EX31_RS22880 +0.7 1.4 DUF945 domain-containing protein compare
EX31_RS19795 +0.7 0.8 hypothetical protein compare
EX31_RS10965 +0.7 2.8 DUF969 domain-containing protein compare
EX31_RS01485 +0.6 1.4 helix-turn-helix domain-containing protein compare
EX31_RS06650 +0.6 2.1 L-arabinose ABC transporter ATP-binding protein AraG compare
EX31_RS06830 +0.6 2.3 ABC transporter substrate-binding protein compare
EX31_RS15120 +0.6 1.8 tRNA-Leu compare
EX31_RS07985 +0.6 3.6 2-dehydro-3-deoxyglucarate aldolase compare
EX31_RS24745 +0.6 1.3 hypothetical protein compare
EX31_RS24570 +0.6 1.8 high frequency lysogenization protein HflD compare
EX31_RS00960 +0.6 1.7 hypothetical protein compare
EX31_RS09645 +0.6 2.3 oxygen-insensitive NADPH nitroreductase compare
EX31_RS12380 +0.6 1.4 PTS phosphocarrier protein NPr compare
EX31_RS01645 +0.6 1.0 DUF1441 family protein compare
EX31_RS01430 +0.6 2.1 type 1 glutamine amidotransferase domain-containing protein compare
EX31_RS13965 +0.6 3.0 heme ABC transporter ATP-binding protein compare
EX31_RS01310 +0.6 1.6 DUF2493 domain-containing protein compare
EX31_RS00585 +0.6 1.5 multidrug efflux SMR transporter compare
EX31_RS06740 +0.6 2.6 ABC transporter substrate-binding protein compare
EX31_RS21590 +0.6 2.5 phosphodiesterase compare
EX31_RS11075 +0.6 1.8 putative motility protein compare
EX31_RS05730 +0.6 1.0 isochorismatase family protein compare
EX31_RS11525 +0.6 1.5 UTP--glucose-1-phosphate uridylyltransferase GalU compare
EX31_RS06355 +0.6 2.6 MFS transporter compare
EX31_RS07485 +0.6 2.4 anion permease compare
EX31_RS10900 +0.6 2.4 helix-turn-helix domain-containing protein compare
EX31_RS24700 +0.6 2.5 PTS mannose transporter subunit IIAB compare
EX31_RS13875 +0.6 3.3 major outer membrane lipoprotein compare
EX31_RS09385 +0.6 2.3 sodium-potassium/proton antiporter ChaA compare
EX31_RS23705 +0.6 2.5 malonyl-ACP O-methyltransferase BioC compare
EX31_RS17715 +0.6 3.2 MipA/OmpV family protein compare
EX31_RS22495 +0.6 2.7 prephenate dehydrogenase compare
EX31_RS01700 +0.6 1.3 chromosome partitioning protein ParB compare
EX31_RS07055 +0.6 1.8 carbohydrate ABC transporter permease compare
EX31_RS01260 +0.6 1.0 YebG family protein compare
EX31_RS10430 +0.6 1.7 5-oxoprolinase subunit PxpB compare
EX31_RS01840 +0.6 1.4 PAS domain-containing protein compare
EX31_RS15975 +0.6 1.0 peptide deformylase compare
EX31_RS07085 +0.6 2.2 LysR family transcriptional regulator compare
EX31_RS01780 +0.6 1.3 hypothetical protein compare
EX31_RS03285 +0.6 1.8 pantoate--beta-alanine ligase compare
EX31_RS00825 +0.5 2.3 ABC transporter ATP-binding protein compare
EX31_RS22335 +0.5 2.3 MGMT family protein compare
EX31_RS00770 +0.5 2.7 LysR family transcriptional regulator compare
EX31_RS06780 +0.5 1.1 glucose 1-dehydrogenase compare
EX31_RS22440 +0.5 1.6 hypothetical protein compare
EX31_RS18305 +0.5 1.3 tail fiber assembly protein compare
EX31_RS02390 +0.5 1.4 steroid Delta-isomerase compare
EX31_RS25965 +0.5 2.0 hypothetical protein compare
EX31_RS02385 +0.5 0.4 hypothetical protein compare
EX31_RS22665 +0.5 1.4 DUF2633 family protein compare
EX31_RS09335 +0.5 0.8 hypothetical protein compare
EX31_RS06915 +0.5 1.0 type I glyceraldehyde-3-phosphate dehydrogenase compare
EX31_RS12010 +0.5 2.2 cysteine protease compare
EX31_RS02130 +0.5 1.4 amino acid-binding protein compare
EX31_RS00655 +0.5 2.0 pyrroloquinoline quinone biosynthesis protein PqqE compare
EX31_RS17660 +0.5 2.6 alpha/beta hydrolase compare
EX31_RS15555 +0.5 1.0 amino acid ABC transporter ATP-binding protein compare
EX31_RS23030 +0.5 1.5 transcription antiterminator/RNA stability regulator CspE compare
EX31_RS21295 +0.5 1.6 acyl carrier protein compare
EX31_RS02555 +0.5 1.8 hypothetical protein compare
EX31_RS06410 +0.5 1.2 FadR family transcriptional regulator compare
EX31_RS11200 +0.5 1.5 alpha/beta fold hydrolase compare
EX31_RS07445 +0.5 1.5 amino acid ABC transporter permease compare
EX31_RS07355 +0.5 1.5 protease modulator HflK compare
EX31_RS16610 +0.5 1.8 glycosyltransferase family 2 protein compare
EX31_RS07300 +0.5 1.2 tetratricopeptide repeat-containing protein compare
EX31_RS09870 +0.5 2.2 LapA family protein compare
EX31_RS01770 +0.5 1.9 hypothetical protein compare
EX31_RS07550 +0.5 1.7 AraC family transcriptional regulator compare
EX31_RS09845 +0.5 1.4 osmotically-inducible lipoprotein OsmB compare
EX31_RS25595 +0.5 0.9 hypothetical protein compare
EX31_RS17100 +0.5 1.0 colicin immunity protein Cui compare
EX31_RS20670 +0.5 0.6 RNA chaperone/antiterminator CspA compare
EX31_RS01765 +0.5 1.3 hypothetical protein compare
EX31_RS23755 +0.5 0.7 molybdopterin synthase sulfur carrier subunit compare
EX31_RS00625 +0.5 0.6 YgdI/YgdR family lipoprotein compare
EX31_RS17415 +0.5 1.4 autoinducer 2 ABC transporter substrate-binding protein compare
EX31_RS17810 +0.5 1.6 triphosphoribosyl-dephospho-CoA synthase CitG compare
EX31_RS10285 +0.5 2.1 carbohydrate ABC transporter permease compare
EX31_RS18420 +0.5 1.6 hypothetical protein compare
EX31_RS19310 +0.5 3.6 ribonucleotide-diphosphate reductase subunit beta compare
EX31_RS24595 +0.5 1.9 membrane protein compare
EX31_RS23880 +0.5 1.2 DUF1471 domain-containing protein compare
EX31_RS10795 +0.5 2.0 HlyD family secretion protein compare
EX31_RS16705 +0.5 1.6 ABC transporter permease compare
EX31_RS15910 +0.5 3.3 thiol:disulfide interchange protein DsbA compare
EX31_RS10925 +0.5 2.3 HAMP domain-containing protein compare
EX31_RS11650 +0.5 1.8 glucose 1-dehydrogenase compare
EX31_RS10435 +0.5 1.2 biotin-dependent carboxyltransferase family protein compare
EX31_RS22005 +0.5 1.8 phosphotransferase compare
EX31_RS09455 +0.5 2.6 FliC/FljB family flagellin compare
EX31_RS06695 +0.5 1.9 cellulose synthase operon protein YhjQ compare
EX31_RS17935 +0.5 2.7 HAMP domain-containing protein compare
EX31_RS06760 +0.5 2.3 urocanate hydratase compare
EX31_RS06420 +0.5 2.3 MFS transporter compare
EX31_RS02225 +0.5 1.5 hypothetical protein compare
EX31_RS09615 +0.5 2.0 putrescine ABC transporter permease PotI compare
EX31_RS07215 +0.5 1.4 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
EX31_RS07610 +0.5 0.8 conjugal transfer protein TraR compare
EX31_RS09780 +0.5 1.7 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase compare
EX31_RS01490 +0.5 2.2 efflux RND transporter periplasmic adaptor subunit compare
EX31_RS21345 +0.5 1.9 fimbria/pilus periplasmic chaperone compare
EX31_RS09600 +0.5 0.8 flagellar type III secretion system protein FliR compare
EX31_RS07425 +0.5 1.9 MurR/RpiR family transcriptional regulator compare
EX31_RS01315 +0.5 1.6 Na/Pi cotransporter family protein compare
EX31_RS02040 +0.5 2.0 ABC transporter permease subunit compare
EX31_RS02895 +0.5 3.2 hypothetical protein compare
EX31_RS25060 +0.5 1.2 DUF2767 family protein compare
EX31_RS20270 +0.5 2.6 nucleoside hydrolase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source Sucrose in Rahnella sp. WP5

For carbon source Sucrose across organisms