Experiment set2IT080 for Pantoea sp. MT58

Compare to:

Defined media control, anaerobic

200 most important genes:

  gene name fitness t score description  
IAI47_13690 -4.9 -1.6 cell envelope integrity protein TolA compare
IAI47_13695 -4.6 -1.5 colicin uptake protein TolR compare
IAI47_07090 -4.3 -12.9 histidinol dehydrogenase compare
IAI47_07165 -4.0 -2.8 exodeoxyribonuclease I compare
IAI47_14350 -4.0 -9.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
IAI47_16390 -4.0 -1.3 tRNA-Leu compare
IAI47_17220 -3.9 -25.7 glutamate synthase large subunit compare
IAI47_17965 -3.9 -14.9 glucose-6-phosphate isomerase compare
IAI47_05520 -3.7 -1.7 tRNA-Ala compare
IAI47_17225 -3.7 -18.4 sulfite reductase subunit alpha compare
IAI47_16205 -3.7 -8.8 threonine synthase compare
IAI47_12885 -3.7 -12.1 pyruvate formate lyase 1-activating protein compare
IAI47_09175 -3.6 -14.2 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF compare
IAI47_00895 -3.6 -17.8 phosphoenolpyruvate carboxylase compare
IAI47_00780 -3.6 -2.5 6-phosphofructokinase compare
IAI47_04120 -3.5 -19.3 GTP diphosphokinase compare
IAI47_16350 -3.5 -10.8 phosphoserine phosphatase compare
IAI47_14945 -3.5 -2.4 pyrroline-5-carboxylate reductase compare
IAI47_16080 -3.4 -10.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
IAI47_00910 -3.4 -9.5 acetylglutamate kinase compare
IAI47_12865 -3.4 -11.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
IAI47_09040 -3.4 -3.0 NAD-dependent epimerase compare
IAI47_00870 -3.4 -1.5 50S ribosomal protein L31 compare
IAI47_00905 -3.4 -12.1 N-acetyl-gamma-glutamyl-phosphate reductase compare
IAI47_00920 -3.4 -15.3 argininosuccinate lyase compare
IAI47_01050 -3.4 -16.7 ketol-acid reductoisomerase compare
IAI47_07075 -3.4 -10.0 imidazole glycerol phosphate synthase subunit HisH compare
IAI47_21880 -3.4 -1.1 ParA family protein compare
IAI47_09180 -3.4 -11.8 anthranilate phosphoribosyltransferase compare
IAI47_07060 -3.3 -10.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE compare
IAI47_09580 -3.3 -4.0 FNR family transcription factor compare
IAI47_09055 -3.3 -14.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
IAI47_07085 -3.3 -12.2 histidinol-phosphate transaminase compare
IAI47_17185 -3.3 -7.8 RNA polymerase factor sigma-54 compare
IAI47_15635 -3.3 -2.1 RNA polymerase-binding protein DksA compare
IAI47_11450 -3.2 -8.8 ankyrin repeat domain-containing protein compare
IAI47_00460 -3.2 -2.2 glutamate--ammonia ligase compare
IAI47_01035 -3.2 -16.4 dihydroxy-acid dehydratase compare
IAI47_13900 -3.2 -14.8 asparagine synthase B compare
IAI47_15005 -3.1 -2.4 hypothetical protein compare
IAI47_18040 -3.1 -15.5 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase compare
IAI47_00300 -3.1 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
IAI47_07080 -3.1 -11.7 bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB compare
IAI47_18830 -3.1 -1.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
IAI47_00880 -3.1 -12.5 cystathionine gamma-synthase compare
IAI47_03725 -3.1 -8.7 phosphoglycerate dehydrogenase compare
IAI47_13770 -3.0 -12.7 citrate synthase compare
IAI47_02350 -3.0 -1.4 tRNA-Thr compare
IAI47_09240 -3.0 -2.1 HTH-type transcriptional regulator CysB compare
IAI47_03860 -3.0 -12.0 diaminopimelate decarboxylase compare
IAI47_03975 -3.0 -12.8 amino-acid N-acetyltransferase compare
IAI47_07065 -3.0 -9.6 imidazole glycerol phosphate synthase subunit HisF compare
IAI47_15120 -3.0 -9.1 glutamate 5-kinase compare
IAI47_16115 -3.0 -16.8 carbamoyl-phosphate synthase large subunit compare
IAI47_11415 -2.9 -2.5 hypothetical protein compare
IAI47_04930 -2.9 -15.6 phosphoribosylformylglycinamidine synthase compare
IAI47_16210 -2.9 -9.0 homoserine kinase compare
IAI47_07095 -2.9 -7.6 ATP phosphoribosyltransferase compare
IAI47_13685 -2.9 -5.1 Tol-Pal system protein TolB compare
IAI47_11760 -2.9 -1.9 TonB-dependent siderophore receptor compare
IAI47_12645 -2.9 -8.5 porin OmpA compare
IAI47_18045 -2.8 -8.6 phosphoribosylamine--glycine ligase compare
IAI47_12880 -2.8 -15.6 formate C-acetyltransferase compare
IAI47_12215 -2.8 -10.6 dihydroorotase compare
IAI47_04895 -2.8 -4.5 pyridoxine 5'-phosphate synthase compare
IAI47_09165 -2.8 -9.6 tryptophan synthase subunit alpha compare
IAI47_09170 -2.8 -12.3 tryptophan synthase subunit beta compare
IAI47_18015 -2.8 -11.9 homoserine O-succinyltransferase compare
IAI47_15115 -2.8 -11.5 glutamate-5-semialdehyde dehydrogenase compare
IAI47_15110 -2.7 -6.6 chromophore lyase compare
IAI47_12705 -2.7 -10.8 quinone-dependent dihydroorotate dehydrogenase compare
IAI47_01365 -2.7 -1.8 inorganic phosphate transporter PitA compare
IAI47_07070 -2.7 -6.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
IAI47_00890 -2.7 -8.4 methylenetetrahydrofolate reductase compare
IAI47_16830 -2.6 -10.7 ornithine carbamoyltransferase compare
IAI47_09190 -2.6 -10.7 anthranilate synthase component 1 compare
IAI47_16120 -2.6 -8.8 glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit compare
IAI47_13765 -2.6 -3.2 succinate dehydrogenase cytochrome b556 subunit compare
IAI47_09185 -2.5 -4.6 glutamine amidotransferase compare
IAI47_06235 -2.5 -6.4 4-phosphoerythronate dehydrogenase PdxB compare
IAI47_16085 -2.5 -1.9 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
IAI47_10520 -2.5 -3.3 pyridoxamine 5'-phosphate oxidase compare
IAI47_05440 -2.4 -8.3 cysteine synthase A compare
IAI47_16015 -2.4 -4.6 3-isopropylmalate dehydratase small subunit compare
IAI47_01040 -2.4 -8.0 threonine ammonia-lyase, biosynthetic compare
IAI47_14355 -2.4 -8.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
IAI47_05180 -2.4 -9.3 phosphoribosylformylglycinamidine cyclo-ligase compare
IAI47_06390 -2.4 -2.8 NADH-quinone oxidoreductase subunit NuoH compare
IAI47_00915 -2.4 -10.1 argininosuccinate synthase compare
IAI47_00455 -2.3 -7.6 nitrogen regulation protein NR(II) compare
IAI47_05425 -2.3 -5.1 phosphoenolpyruvate-protein phosphotransferase PtsI compare
IAI47_16000 -2.3 -12.3 2-isopropylmalate synthase compare
IAI47_06320 -2.3 -6.8 phosphate acetyltransferase compare
IAI47_09010 -2.3 -7.4 formyltetrahydrofolate deformylase compare
IAI47_05275 -2.2 -4.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
IAI47_06245 -2.2 -4.2 tRNA pseudouridine(38-40) synthase TruA compare
IAI47_01030 -2.2 -10.2 branched-chain amino acid transaminase compare
IAI47_06275 -2.2 -12.2 amidophosphoribosyltransferase compare
IAI47_00465 -2.2 -4.0 ribosome-dependent GTPase TypA compare
IAI47_05420 -2.2 -1.4 PTS glucose transporter subunit IIA compare
IAI47_09275 -2.2 -6.3 orotidine-5'-phosphate decarboxylase compare
IAI47_09235 -2.2 -1.8 type I DNA topoisomerase compare
IAI47_00600 -2.2 -8.0 orotate phosphoribosyltransferase compare
IAI47_20625 -2.1 -4.1 DUF2946 domain-containing protein compare
IAI47_04410 -2.1 -11.0 bifunctional chorismate mutase/prephenate dehydratase compare
IAI47_16010 -2.0 -9.8 3-isopropylmalate dehydratase large subunit compare
IAI47_06325 -2.0 -5.8 acetate kinase compare
IAI47_00445 -2.0 -9.2 oxygen-independent coproporphyrinogen III oxidase compare
IAI47_12915 -2.0 -7.7 leucine-responsive transcriptional regulator Lrp compare
IAI47_16215 -2.0 -10.8 bifunctional aspartate kinase/homoserine dehydrogenase I compare
IAI47_16860 -2.0 -9.7 aspartate carbamoyltransferase compare
IAI47_00515 -2.0 -2.0 DNA-directed RNA polymerase subunit omega compare
IAI47_08085 -1.9 -4.2 helix-turn-helix domain-containing protein compare
IAI47_05070 -1.9 -1.1 outer membrane protein assembly factor BamB compare
IAI47_15605 -1.9 -1.6 Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC compare
IAI47_19295 -1.9 -2.6 hypothetical protein compare
IAI47_05435 -1.8 -3.0 hypothetical protein compare
IAI47_04160 -1.8 -8.1 phosphoadenylyl-sulfate reductase compare
IAI47_17005 -1.8 -7.6 polyribonucleotide nucleotidyltransferase compare
IAI47_08445 -1.8 -1.3 Holliday junction branch migration protein RuvA compare
IAI47_13495 -1.8 -4.7 GTP 3',8-cyclase MoaA compare
IAI47_12030 -1.8 -8.5 PTS glucose transporter subunit IIBC compare
IAI47_13480 -1.7 -2.6 molybdopterin synthase sulfur carrier subunit compare
IAI47_21015 -1.7 -4.2 helix-turn-helix transcriptional regulator compare
IAI47_13475 -1.7 -3.0 molybdopterin synthase catalytic subunit MoaE compare
IAI47_13050 -1.7 -3.9 YbjN domain-containing protein compare
IAI47_12110 -1.7 -3.7 ribonuclease E compare
IAI47_16005 -1.7 -6.9 3-isopropylmalate dehydrogenase compare
IAI47_13180 -1.7 -4.9 manganese-binding transcriptional regulator MntR compare
IAI47_16870 -1.7 -4.4 2-iminobutanoate/2-iminopropanoate deaminase compare
IAI47_00655 -1.7 -5.8 glycosyltransferase family 4 protein compare
IAI47_06365 -1.6 -3.7 NADH-quinone oxidoreductase subunit B compare
IAI47_04260 -1.6 -9.3 nitrate reductase subunit beta compare
IAI47_19050 -1.6 -3.4 hypothetical protein compare
IAI47_16190 -1.6 -4.3 molybdopterin adenylyltransferase compare
IAI47_03375 -1.6 -6.5 peptide chain release factor 3 compare
IAI47_00735 -1.5 -1.3 protein-export chaperone SecB compare
IAI47_04400 -1.5 -5.4 3-deoxy-7-phosphoheptulonate synthase compare
IAI47_00410 -1.5 -7.2 molybdenum cofactor guanylyltransferase MobA compare
IAI47_13145 -1.5 -5.1 molybdopterin-synthase adenylyltransferase MoeB compare
IAI47_02695 -1.5 -6.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
IAI47_19030 -1.5 -2.2 hypothetical protein compare
IAI47_02090 -1.5 -2.7 elongation factor Tu compare
IAI47_04270 -1.5 -5.5 respiratory nitrate reductase subunit gamma compare
IAI47_06415 -1.4 -3.8 NADH-quinone oxidoreductase subunit M compare
IAI47_10470 -1.4 -1.9 electron transport complex subunit E compare
IAI47_01955 -1.4 -7.1 aspartate aminotransferase family protein compare
IAI47_21675 -1.4 -3.6 helix-turn-helix domain-containing protein compare
IAI47_03195 -1.4 -3.1 cell division protein FtsP compare
IAI47_07470 -1.4 -2.5 AlpA family transcriptional regulator compare
IAI47_18435 -1.4 -8.4 uroporphyrinogen-III C-methyltransferase compare
IAI47_10840 -1.4 -3.4 pyruvate kinase PykF compare
IAI47_19710 -1.3 -3.0 helix-turn-helix transcriptional regulator compare
IAI47_08355 -1.3 -2.3 flagellar protein FlhE compare
IAI47_17560 -1.3 -0.8 ROK family transcriptional regulator compare
IAI47_13485 -1.3 -3.9 cyclic pyranopterin monophosphate synthase MoaC compare
IAI47_04265 -1.3 -5.7 nitrate reductase molybdenum cofactor assembly chaperone compare
IAI47_03820 -1.3 -2.6 site-specific tyrosine recombinase XerD compare
IAI47_13140 -1.3 -4.7 molybdopterin molybdotransferase MoeA compare
IAI47_15540 -1.3 -6.1 bifunctional uridylyltransferase/uridylyl-removing protein GlnD compare
IAI47_15105 -1.3 -1.2 hypothetical protein compare
IAI47_14940 -1.2 -1.3 YaiI/YqxD family protein compare
IAI47_18715 -1.2 -1.4 YibL family ribosome-associated protein compare
IAI47_04835 -1.2 -4.5 ATP-dependent RNA helicase SrmB compare
IAI47_04255 -1.2 -9.1 nitrate reductase subunit alpha compare
IAI47_06980 -1.2 -3.2 colanic acid biosynthesis pyruvyl transferase WcaK compare
IAI47_00875 -1.2 -1.2 met regulon transcriptional regulator MetJ compare
IAI47_11310 -1.2 -2.7 redox-regulated ATPase YchF compare
IAI47_10725 -1.2 -1.8 DUF1656 domain-containing protein compare
IAI47_20035 -1.2 -4.1 GNAT family N-acetyltransferase compare
IAI47_10320 -1.2 -0.7 Rrf2 family transcriptional regulator compare
IAI47_21680 -1.2 -2.0 hypothetical protein compare
IAI47_04350 -1.2 -7.6 glutamate--cysteine ligase compare
IAI47_18530 -1.2 -1.3 thioredoxin TrxA compare
IAI47_10945 -1.2 -2.6 vitamin B12 ABC transporter permease BtuC compare
IAI47_01780 -1.2 -1.6 Fe-S biogenesis protein NfuA compare
IAI47_06360 -1.2 -1.4 NADH-quinone oxidoreductase subunit A compare
IAI47_06410 -1.1 -3.7 NADH-quinone oxidoreductase subunit L compare
IAI47_09210 -1.1 -4.4 23S rRNA pseudouridine(2605) synthase RluB compare
IAI47_04155 -1.1 -5.3 assimilatory sulfite reductase (NADPH) hemoprotein subunit compare
IAI47_11935 -1.1 -7.5 two-component system sensor histidine kinase PhoQ compare
IAI47_17120 -1.1 -1.3 BolA family iron metabolism protein IbaG compare
IAI47_00900 -1.1 -5.3 acetylornithine deacetylase compare
IAI47_12300 -1.0 -1.9 hypothetical protein compare
IAI47_14470 -1.0 -1.1 YbaB/EbfC family nucleoid-associated protein compare
IAI47_10435 -1.0 -3.0 transcription modulator YdgT compare
IAI47_18240 -1.0 -2.4 NAD(P)H-flavin reductase compare
IAI47_18765 -1.0 -2.3 damage-inducible protein J compare
IAI47_11655 -1.0 -2.1 hypothetical protein compare
IAI47_10755 -1.0 -1.1 DUF1289 domain-containing protein compare
IAI47_00450 -1.0 -5.5 nitrogen regulation protein NR(I) compare
IAI47_12925 -1.0 -2.0 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
IAI47_06405 -1.0 -1.9 NADH-quinone oxidoreductase subunit NuoK compare
IAI47_03135 -1.0 -3.0 outer membrane channel protein TolC compare
IAI47_06355 -1.0 -4.3 transcriptional regulator LrhA compare
IAI47_06120 -1.0 -2.2 YfcZ/YiiS family protein compare
IAI47_03970 -1.0 -3.6 exodeoxyribonuclease V subunit alpha compare
IAI47_09395 -1.0 -1.5 phage shock protein PspA compare
IAI47_06370 -1.0 -2.7 NADH-quinone oxidoreductase subunit C/D compare
IAI47_02040 -1.0 -3.8 peptidylprolyl isomerase compare


Specific Phenotypes

None in this experiment

For Pantoea sp. MT58 in no stress control experiments

For no stress control Sodium nitrate across organisms