Experiment set2IT080 for Herbaspirillum seropedicae SmR1

Compare to:

LB with Lomefloxacin hydrochloride 0.012 mM

200 most important genes:

  gene name fitness t score description  
HSERO_RS17815 -6.5 -4.1 glycosyl transferase compare
HSERO_RS20985 -5.0 -1.5 serine acetyltransferase compare
HSERO_RS17810 -5.0 -1.5 glycosyl transferase compare
HSERO_RS19630 -4.9 -1.1 AMP nucleosidase compare
HSERO_RS02415 -4.9 -14.9 hemolysin D conserved
HSERO_RS17980 -4.9 -2.7 GTP-binding protein compare
HSERO_RS09915 -4.9 -1.8 transcriptional regulator compare
HSERO_RS08405 -4.7 -1.4 membrane protein compare
HSERO_RS05515 -4.6 -1.0 glucose-6-phosphate isomerase compare
HSERO_RS21340 -4.6 -5.2 septum formation inhibitor protein compare
HSERO_RS02410 -4.4 -12.6 acriflavine resistance protein B conserved
HSERO_RS15630 -4.4 -1.0 exodeoxyribonuclease III compare
HSERO_RS02405 -4.4 -6.8 multidrug transporter compare
HSERO_RS04325 -4.2 -7.8 helicase I compare
HSERO_RS16885 -4.2 -1.3 magnesium-transporting ATPase compare
HSERO_RS19780 -4.2 -8.1 chemotaxis protein CheY compare
HSERO_RS18360 -4.0 -2.3 hypothetical protein compare
HSERO_RS19770 -4.0 -1.2 hypothetical protein compare
HSERO_RS02260 -3.9 -5.8 DNA polymerase I compare
HSERO_RS19775 -3.9 -9.2 acriflavine resistance protein B compare
HSERO_RS06165 -3.9 -5.3 ATP-dependent DNA helicase RecG compare
HSERO_RS10605 -3.8 -1.2 membrane protein compare
HSERO_RS19805 -3.6 -5.4 glycosyl transferase compare
HSERO_RS05850 -3.6 -6.9 exodeoxyribonuclease VII large subunit conserved
HSERO_RS17105 -3.5 -2.1 DNA polymerase III subunit epsilon compare
HSERO_RS02095 -3.4 -1.0 Holliday junction DNA helicase RuvB compare
HSERO_RS21345 -3.4 -5.0 cell division inhibitor MinD compare
HSERO_RS04330 -3.4 -8.3 ATP-dependent exonuclease compare
HSERO_RS10805 -3.4 -1.8 succinyldiaminopimelate aminotransferase compare
HSERO_RS19785 -3.3 -6.0 sensor histidine kinase compare
HSERO_RS12715 -3.2 -1.4 hypothetical protein compare
HSERO_RS14835 -3.2 -4.1 peptidase M23 compare
HSERO_RS15005 -3.2 -1.4 ribosomal protein S12 methylthiotransferase compare
HSERO_RS02330 -3.1 -6.9 aspartate carbamoyltransferase compare
HSERO_RS03275 -3.1 -7.7 regulatory protein RecX conserved
HSERO_RS20820 -3.1 -0.9 ABC transporter ATP-binding protein compare
HSERO_RS21640 -3.0 -3.5 recombinase RdgC compare
HSERO_RS02215 -3.0 -1.1 D-arabinitol 4-dehydrogenase compare
HSERO_RS07385 -3.0 -0.9 hypothetical protein compare
HSERO_RS09155 -3.0 -7.2 DNA topoisomerase IV subunit B compare
HSERO_RS02090 -3.0 -1.5 Holliday junction DNA helicase RuvA compare
HSERO_RS06015 -3.0 -1.3 hisitidine kinase compare
HSERO_RS03270 -2.9 -2.4 protein RecA compare
HSERO_RS17110 -2.9 -2.3 ribonuclease H compare
HSERO_RS09335 -2.9 -0.8 DNA-3-methyladenine glycosylase compare
HSERO_RS21475 -2.8 -2.4 recombinase XerC compare
HSERO_RS14150 -2.8 -1.2 RNA polymerase sigma factor compare
HSERO_RS19835 -2.7 -2.4 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
HSERO_RS08975 -2.7 -2.0 membrane protein compare
HSERO_RS19265 -2.6 -1.8 LysR family transcriptional regulator compare
HSERO_RS02145 -2.5 -1.4 ferritin compare
HSERO_RS09500 -2.4 -7.6 cell division protein FtsK compare
HSERO_RS10180 -2.4 -0.7 flagellar biosynthesis protein FlgB compare
HSERO_RS10460 -2.3 -0.9 homoserine dehydrogenase compare
HSERO_RS10200 -2.3 -3.9 flagellar basal body rod protein FlgF compare
HSERO_RS13965 -2.3 -1.6 single-stranded DNA exonuclease compare
HSERO_RS14515 -2.3 -2.7 hypothetical protein compare
HSERO_RS18365 -2.3 -3.5 hypothetical protein compare
HSERO_RS11465 -2.2 -1.3 sodium:proton antiporter compare
HSERO_RS02160 -2.2 -1.5 DNA-dependent helicase compare
HSERO_RS16050 -2.2 -1.1 peptidase S41 compare
HSERO_RS21090 -2.1 -2.6 dTDP-4-dehydrorhamnose reductase compare
HSERO_RS10160 -2.1 -3.2 flagellar biosynthesis sigma factor compare
HSERO_RS10815 -2.1 -2.7 chromosome segregation protein SMC compare
HSERO_RS07570 -2.1 -1.7 membrane protein compare
HSERO_RS09120 -2.1 -1.3 hypothetical protein compare
HSERO_RS12920 -2.0 -0.8 trigger factor compare
HSERO_RS04860 -2.0 -0.8 sugar ABC transporter permease compare
HSERO_RS07355 -2.0 -1.3 hypothetical protein compare
HSERO_RS10175 -1.9 -5.4 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS12540 -1.9 -1.5 hemerythrin compare
HSERO_RS09145 -1.9 -3.0 DNA topoisomerase IV subunit A compare
HSERO_RS04220 -1.9 -2.4 epoxyqueuosine reductase compare
HSERO_RS01785 -1.9 -1.1 hypothetical protein compare
HSERO_RS08075 -1.8 -0.7 ferredoxin compare
HSERO_RS17155 -1.8 -1.9 RNA helicase compare
HSERO_RS09650 -1.8 -1.3 elongation factor 4 compare
HSERO_RS21590 -1.8 -8.6 ATP-dependent DNA helicase Rep compare
HSERO_RS09355 -1.8 -1.5 hypothetical protein compare
HSERO_RS16680 -1.8 -2.7 GntR family transcriptional regulator compare
HSERO_RS12220 -1.8 -0.7 dehydrogenase compare
HSERO_RS03045 -1.8 -4.9 HrcA family transcriptional regulator compare
HSERO_RS04340 -1.7 -4.5 gamma-glutamyl ligase compare
HSERO_RS18145 -1.7 -1.7 membrane protein compare
HSERO_RS14055 -1.7 -1.9 acyl-CoA dehydrogenase compare
HSERO_RS14425 -1.7 -0.9 hypothetical protein compare
HSERO_RS06025 -1.7 -4.8 histidine kinase compare
HSERO_RS11480 -1.7 -1.9 D-ribose ABC transporter, substrate-binding component RbsB (from data) compare
HSERO_RS02425 -1.7 -3.8 transcriptional activator compare
HSERO_RS17285 -1.7 -2.5 chromate transporter compare
HSERO_RS10290 -1.6 -4.5 flagellar biosynthesis protein FliJ compare
HSERO_RS10860 -1.6 -1.9 RNA pseudouridylate synthase compare
HSERO_RS16485 -1.6 -2.2 tRNA pseudouridine synthase A compare
HSERO_RS16405 -1.6 -2.6 peptidase M50 compare
HSERO_RS00450 -1.6 -3.7 phosphoenolpyruvate-protein phosphotransferase compare
HSERO_RS10600 -1.6 -3.4 diguanylate phosphodiesterase compare
HSERO_RS14030 -1.6 -2.3 hypothetical protein compare
HSERO_RS03235 -1.6 -1.2 hypothetical protein compare
HSERO_RS12480 -1.6 -0.7 membrane protein compare
HSERO_RS19610 -1.6 -1.1 hypothetical protein compare
HSERO_RS19135 -1.5 -1.2 exodeoxyribonuclease compare
HSERO_RS07600 -1.5 -2.9 threonine-phosphate decarboxylase compare
HSERO_RS11460 -1.5 -0.9 universal stress protein compare
HSERO_RS10355 -1.5 -2.3 flagellin compare
HSERO_RS23365 -1.5 -3.1 transporter compare
HSERO_RS20725 -1.5 -4.6 permease compare
HSERO_RS02365 -1.5 -2.2 hypothetical protein compare
HSERO_RS03475 -1.5 -2.7 NUDIX hydrolase compare
HSERO_RS10745 -1.5 -3.7 DNA repair protein RadA compare
HSERO_RS19535 -1.5 -1.5 nucleotide-binding protein compare
HSERO_RS09255 -1.5 -1.2 molybdenum cofactor biosynthesis protein MogA compare
HSERO_RS08700 -1.5 -0.7 hypothetical protein compare
HSERO_RS17855 -1.4 -1.6 DEAD/DEAH box helicase compare
HSERO_RS06280 -1.4 -1.8 GDP-mannose-dependent alpha-mannosyltransferase compare
HSERO_RS23420 -1.4 -2.1 hypothetical protein compare
HSERO_RS10410 -1.4 -1.9 alkyl hydroperoxide reductase compare
HSERO_RS07265 -1.4 -3.7 aspartyl/asparaginyl beta-hydroxylase AspH compare
HSERO_RS22640 -1.4 -2.3 porin compare
HSERO_RS14340 -1.4 -1.6 hypothetical protein compare
HSERO_RS19520 -1.4 -1.5 hypothetical protein compare
HSERO_RS07755 -1.4 -1.7 glutamate racemase compare
HSERO_RS03540 -1.4 -0.9 dimethyladenosine transferase compare
HSERO_RS04230 -1.4 -1.7 LuxR family transcriptional regulator compare
HSERO_RS23945 -1.4 -2.1 cobyric acid synthase CobQ compare
HSERO_RS09390 -1.3 -2.6 recombinase RmuC compare
HSERO_RS21765 -1.3 -2.7 cell division protein compare
HSERO_RS03595 -1.3 -2.4 cation transporter compare
HSERO_RS11170 -1.3 -1.2 ABC transporter ATP-binding protein compare
HSERO_RS21450 -1.3 -2.4 lipid A biosynthesis acyltransferase compare
HSERO_RS02100 -1.3 -1.3 4-oxalocrotonate decarboxylase compare
HSERO_RS00180 -1.3 -1.2 hypothetical protein compare
HSERO_RS04265 -1.3 -1.0 tyrosine recombinase XerD compare
HSERO_RS15475 -1.3 -1.2 GNAT family acetyltraansferase compare
HSERO_RS00955 -1.3 -3.4 Tail fiber protein compare
HSERO_RS03925 -1.3 -1.0 hypothetical protein compare
HSERO_RS01550 -1.3 -2.3 hypothetical protein compare
HSERO_RS10295 -1.3 -2.7 ATP synthase compare
HSERO_RS11845 -1.3 -1.5 hypothetical protein compare
HSERO_RS06150 -1.3 -3.1 cell division protein ZapA compare
HSERO_RS22375 -1.3 -3.3 hypothetical protein compare
HSERO_RS05325 -1.3 -1.2 ribose ABC transporter permease compare
HSERO_RS00175 -1.3 -2.1 RNA polymerase sigma factor compare
HSERO_RS23295 -1.3 -1.8 transcription factor compare
HSERO_RS02315 -1.3 -3.1 transcriptional regulator compare
HSERO_RS22215 -1.3 -2.7 branched-chain amino acid ABC transporter permease compare
HSERO_RS18355 -1.3 -2.9 recombinase RecR compare
HSERO_RS11655 -1.3 -1.6 hemerythrin compare
HSERO_RS03060 -1.3 -2.2 DNA repair protein compare
HSERO_RS04015 -1.2 -1.5 flagellar biosynthesis/type III secretory pathway protein compare
HSERO_RS21955 -1.2 -2.6 hypothetical protein compare
HSERO_RS06070 -1.2 -1.9 methyl-accepting chemotaxis protein compare
HSERO_RS11855 -1.2 -0.6 hypothetical protein compare
HSERO_RS01870 -1.2 -2.1 ABC transporter permease compare
HSERO_RS21425 -1.2 -2.8 5,10-methylenetetrahydrofolate reductase compare
HSERO_RS10185 -1.2 -2.7 flagellar basal body rod protein FlgC compare
HSERO_RS22960 -1.2 -1.7 glyoxalase compare
HSERO_RS03440 -1.2 -1.8 biopolymer transporter ExbD compare
HSERO_RS02255 -1.2 -2.4 decarboxylase compare
HSERO_RS14375 -1.2 -1.1 IscN protein compare
HSERO_RS09290 -1.2 -2.5 ribonuclease R compare
HSERO_RS19550 -1.2 -2.2 hypothetical protein compare
HSERO_RS10970 -1.2 -0.9 NfeD family protein compare
HSERO_RS21760 -1.2 -2.9 DSBA oxidoreductase compare
HSERO_RS14840 -1.2 -1.5 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS10035 -1.2 -1.1 hypothetical protein compare
HSERO_RS11960 -1.2 -1.8 hypothetical protein compare
HSERO_RS07470 -1.2 -0.7 ketosteroid isomerase compare
HSERO_RS21990 -1.2 -1.0 hypothetical protein compare
HSERO_RS07240 -1.1 -1.8 membrane protein compare
HSERO_RS17480 -1.1 -1.9 nitronate monooxygenase compare
HSERO_RS01990 -1.1 -2.0 shikimate 5-dehydrogenase compare
HSERO_RS20955 -1.1 -1.7 thiol:disulfide interchange protein compare
HSERO_RS19415 -1.1 -3.3 membrane protein compare
HSERO_RS14745 -1.1 -1.9 nicotinate phosphoribosyltransferase compare
HSERO_RS08605 -1.1 -1.0 Hsp33 chaperonin compare
HSERO_RS03620 -1.1 -2.3 LysR family transcriptional regulator compare
HSERO_RS14395 -1.1 -0.9 oxygen-binding protein compare
HSERO_RS20720 -1.1 -3.8 GMP synthase compare
HSERO_RS00810 -1.1 -1.0 glutaredoxin compare
HSERO_RS10190 -1.1 -1.5 flagellar basal body rod modification protein FlgD compare
HSERO_RS00910 -1.1 -2.2 peptidase compare
HSERO_RS12705 -1.1 -1.2 metallophosphatase compare
HSERO_RS05820 -1.1 -4.0 IclR family transcriptional regulator compare
HSERO_RS16985 -1.1 -2.4 nitrate ABC transporter substrate-binding protein compare
HSERO_RS09935 -1.1 -1.8 UDP-phosphate glucose phosphotransferase compare
HSERO_RS05225 -1.1 -2.2 L-arabinolactonase (EC 3.1.1.15) (from data) compare
HSERO_RS07290 -1.1 -2.7 oligopeptidase A compare
HSERO_RS09560 -1.1 -2.8 MarR family transcriptional regulator compare
HSERO_RS19365 -1.1 -1.3 2-keto-3-deoxy-L-fuconate 4-dehydrogenase FucDH (from data) compare
HSERO_RS17720 -1.1 -3.2 aminopeptidase N compare
HSERO_RS03450 -1.1 -1.1 energy transducer protein TonB compare
HSERO_RS15730 -1.1 -1.7 hypothetical protein compare
HSERO_RS22655 -1.1 -2.3 iron ABC transporter substrate-binding protein compare
HSERO_RS02175 -1.1 -1.2 NmrA family transcriptional regulator compare
HSERO_RS02865 -1.1 -1.6 transcription regulator protein compare
HSERO_RS22365 -1.1 -2.6 lipid kinase compare
HSERO_RS00745 -1.1 -1.4 alkylhydroperoxidase compare
HSERO_RS03445 -1.1 -3.2 biopolymer transport transmembrane protein compare
HSERO_RS20260 -1.1 -1.2 2-alkenal reductase compare
HSERO_RS04830 -1.1 -2.8 alcohol dehydrogenase compare


Specific Phenotypes

For 9 genes in this experiment

For stress Lomefloxacin hydrochloride in Herbaspirillum seropedicae SmR1

For stress Lomefloxacin hydrochloride across organisms