Experiment set2IT080 for Herbaspirillum seropedicae SmR1

Compare to:

LB with Lomefloxacin hydrochloride 0.012 mM

Group: stress
Media: LB + Lomefloxacin hydrochloride (0.012 mM)
Culturing: HerbieS_ML4, 24 deep-well microplate; Multitron, Aerobic, at 30 (C), shaken=750 rpm
Growth: about 3.9 generations
By: Mark on 3/10/2016
Media components: 10 g/L Tryptone, 5 g/L Yeast Extract, 5 g/L Sodium Chloride
Growth plate: Herbie_SP5 B5

Specific Phenotypes

For 9 genes in this experiment

For stress Lomefloxacin hydrochloride in Herbaspirillum seropedicae SmR1

For stress Lomefloxacin hydrochloride across organisms

SEED Subsystems

Subsystem #Specific
Multidrug Resistance Efflux Pumps 4
Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) 3
DNA repair, bacterial 1

Metabolic Maps

Color code by fitness: see overview map or list of maps.

Maps containing gene(s) with specific phenotypes:

MetaCyc Pathways

Pathways that contain genes with specific phenotypes:

Pathway #Steps #Present #Specific
gondoate biosynthesis (anaerobic) 4 4 1
octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast) 12 9 3
palmitate biosynthesis III 29 21 7
tetradecanoate biosynthesis (mitochondria) 25 17 6
palmitate biosynthesis II (type II fatty acid synthase) 31 29 7
palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate) 9 9 2
oleate biosynthesis IV (anaerobic) 14 13 3
superpathway of fatty acids biosynthesis (E. coli) 53 50 11
cis-vaccenate biosynthesis 5 5 1
fatty acid elongation -- saturated 5 5 1
superpathway of unsaturated fatty acids biosynthesis (E. coli) 20 19 4
8-amino-7-oxononanoate biosynthesis IV 5 4 1
superpathway of fatty acid biosynthesis II (plant) 43 38 8
8-amino-7-oxononanoate biosynthesis I 11 9 2
anteiso-branched-chain fatty acid biosynthesis 34 24 6
odd iso-branched-chain fatty acid biosynthesis 34 24 6
even iso-branched-chain fatty acid biosynthesis 34 24 6
stearate biosynthesis II (bacteria and plants) 6 5 1
(5Z)-dodecenoate biosynthesis I 6 5 1
stearate biosynthesis IV 6 4 1
(5Z)-dodecenoate biosynthesis II 6 4 1
petroselinate biosynthesis 6 2 1
streptorubin B biosynthesis 34 20 5
biotin biosynthesis I 15 13 2
superpathway of fatty acid biosynthesis I (E. coli) 16 14 2
2-allylmalonyl-CoA biosynthesis 8 2 1
mycolate biosynthesis 205 25 5
superpathway of mycolate biosynthesis 239 26 5