Experiment set2IT080 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Tryptophan carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -8.2 -5.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS16255 -6.5 -6.3 sulfate adenylyltransferase compare
RR42_RS30655 -6.3 -4.3 LysR family transcriptional regulator compare
RR42_RS14400 -6.3 -4.3 isopropylmalate isomerase compare
RR42_RS06485 -6.2 -6.0 chorismate synthase compare
RR42_RS33255 -6.0 -3.7 protein-tyrosine phosphatase compare
RR42_RS05860 -5.7 -5.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS19005 -5.6 -5.5 3-dehydroquinate synthase compare
RR42_RS15905 -5.2 -12.1 phosphoenolpyruvate carboxylase compare
RR42_RS16245 -5.2 -5.0 uroporphyrin-III methyltransferase compare
RR42_RS04475 -5.2 -11.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS01385 -5.1 -4.3 5,10-methylenetetrahydrofolate reductase compare
RR42_RS16250 -5.1 -8.5 sulfate adenylyltransferase compare
RR42_RS16275 -5.0 -4.8 membrane protein compare
RR42_RS14320 -4.9 -6.7 O-succinylhomoserine sulfhydrylase compare
RR42_RS12175 -4.9 -12.6 malate synthase compare
RR42_RS07425 -4.9 -8.3 IclR family transcriptional regulator compare
RR42_RS16270 -4.7 -10.8 sulfite reductase compare
RR42_RS04535 -4.6 -6.3 cysteine synthase compare
RR42_RS13530 -4.6 -4.4 4-hydroxybenzoyl-CoA thioesterase compare
RR42_RS01160 -4.6 -9.2 homoserine O-acetyltransferase compare
RR42_RS12040 -4.5 -13.5 MFS transporter compare
RR42_RS14390 -4.5 -4.2 3-isopropylmalate dehydratase compare
RR42_RS33260 -4.3 -9.1 multidrug MFS transporter compare
RR42_RS11795 -4.3 -2.4 PEP synthetase regulatory protein compare
RR42_RS02500 -4.2 -3.9 TetR family transcriptional regulator compare
RR42_RS33240 -4.1 -18.6 GDP-L-fucose synthase compare
RR42_RS15400 -4.1 -8.5 acyl-CoA dehydrogenase compare
RR42_RS07555 -4.1 -3.9 potassium transporter Kup compare
RR42_RS14385 -4.0 -5.5 3-isopropylmalate dehydrogenase compare
RR42_RS30660 -4.0 -5.9 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS33250 -4.0 -8.0 tyrosine protein kinase compare
RR42_RS18855 -4.0 -3.8 preprotein translocase compare
RR42_RS16280 -3.9 -6.5 transcriptional regulator compare
RR42_RS15385 -3.9 -10.6 Kynureninase (EC 3.7.1.3) (from data) conserved
RR42_RS17645 -3.8 -7.9 shikimate dehydrogenase compare
RR42_RS15375 -3.6 -4.9 AsnC family transcriptional regulator conserved
RR42_RS18990 -3.6 -18.2 glutamate synthase compare
RR42_RS11790 -3.5 -7.2 phosphoenolpyruvate synthase compare
RR42_RS07605 -3.4 -7.7 poly-beta-hydroxybutyrate polymerase compare
RR42_RS33235 -3.4 -8.4 GDP-mannose 4,6-dehydratase compare
RR42_RS13555 -3.3 -9.6 anthraniloyl-CoA monooxygenase (EC 1.14.13.40) (from data) conserved
RR42_RS19010 -3.3 -5.5 shikimate kinase compare
RR42_RS01845 -3.3 -1.9 glycerol-3-phosphate dehydrogenase compare
RR42_RS33245 -3.3 -9.3 mannose-1-phosphate guanyltransferase compare
RR42_RS15390 -3.2 -6.8 Tryptophan 2,3-dioxygenase (EC 1.13.11.11) (from data) conserved
RR42_RS20205 -3.1 -3.6 chromosome partitioning protein compare
RR42_RS01290 -3.0 -4.6 thiamine biosynthesis protein ThiC compare
RR42_RS13550 -3.0 -5.4 3-hydroxyacyl-CoA dehydrogenase conserved
RR42_RS04460 -3.0 -5.0 chorismate mutase compare
RR42_RS18930 -2.9 -6.9 BolA family transcriptional regulator compare
RR42_RS12550 -2.8 -6.6 hypothetical protein compare
RR42_RS06095 -2.8 -5.1 hypothetical protein compare
RR42_RS16240 -2.6 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS01720 -2.6 -1.6 membrane protein compare
RR42_RS18820 -2.5 -7.6 cytochrome B compare
RR42_RS26905 -2.5 -7.3 methylcrotonoyl-CoA carboxylase compare
RR42_RS05990 -2.5 -9.2 aromatic amino acid aminotransferase compare
RR42_RS02705 -2.4 -2.8 Holliday junction DNA helicase RuvA compare
RR42_RS18985 -2.4 -5.5 glutamate synthase compare
RR42_RS26900 -2.3 -3.7 enoyl-CoA hydratase compare
RR42_RS24605 -2.3 -7.4 TetR family transcriptional regulator compare
RR42_RS15380 -2.3 -3.0 kynurenine formamidase compare
RR42_RS33210 -2.3 -8.0 teichoic acid biosynthesis protein compare
RR42_RS03095 -2.2 -2.2 succinyl-CoA synthetase subunit beta compare
RR42_RS05955 -2.2 -1.7 hypothetical protein compare
RR42_RS18815 -2.1 -7.3 cytochrome C compare
RR42_RS01775 -2.1 -6.2 glutamate--cysteine ligase compare
RR42_RS13540 -2.1 -3.8 acyl-CoA dehydrogenase compare
RR42_RS13800 -2.1 -5.1 formyltetrahydrofolate deformylase compare
RR42_RS18850 -2.1 -2.3 preprotein translocase subunit TatC compare
RR42_RS16960 -2.0 -8.8 ABC transporter ATP-binding protein compare
RR42_RS04700 -2.0 -1.8 ribonuclease G compare
RR42_RS21040 -2.0 -1.3 hypothetical protein compare
RR42_RS17505 -2.0 -10.9 NAD synthetase compare
RR42_RS16970 -2.0 -12.9 ABC transporter ATP-binding protein compare
RR42_RS26590 -1.9 -2.2 hypothetical protein compare
RR42_RS12615 -1.9 -2.6 LexA family transcriptional regulator compare
RR42_RS37400 -1.9 -1.5 6-phosphogluconolactonase compare
RR42_RS07360 -1.8 -3.0 ATPase compare
RR42_RS16980 -1.8 -10.3 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS33355 -1.8 -5.2 membrane protein compare
RR42_RS05920 -1.7 -4.8 HrcA family transcriptional regulator compare
RR42_RS04145 -1.7 -1.2 peptidase A24 compare
RR42_RS00115 -1.7 -1.8 hypothetical protein compare
RR42_RS21220 -1.7 -2.8 iron transporter FeoB compare
RR42_RS00380 -1.7 -6.0 GntR family transcriptional regulator compare
RR42_RS01920 -1.7 -3.6 protoheme IX farnesyltransferase compare
RR42_RS34815 -1.7 -3.6 diguanylate cyclase compare
RR42_RS17390 -1.6 -4.1 ATP-dependent DNA helicase RecG compare
RR42_RS16975 -1.6 -6.4 ABC transporter permease compare
RR42_RS05715 -1.6 -7.4 acyl-CoA dehydrogenase compare
RR42_RS01915 -1.6 -6.3 cytochrome C oxidase subunit I compare
RR42_RS17490 -1.6 -4.2 NADP transhydrogenase subunit alpha compare
RR42_RS13880 -1.6 -10.9 AMP-dependent synthetase compare
RR42_RS01875 -1.5 -6.2 cytochrome C oxidase subunit II compare
RR42_RS03080 -1.5 -3.8 recombinase RecA compare
RR42_RS12050 -1.5 -6.6 DNA polymerase compare
RR42_RS12180 -1.5 -3.3 haloacid dehalogenase compare
RR42_RS09180 -1.5 -1.3 Rrf2 family transcriptional regulator compare
RR42_RS01400 -1.4 -4.9 5-formyltetrahydrofolate cyclo-ligase compare
RR42_RS14055 -1.4 -3.1 elongation factor 4 compare
RR42_RS07115 -1.4 -1.3 hypothetical protein compare
RR42_RS33650 -1.4 -3.4 IclR family transcriptional regulator compare
RR42_RS01885 -1.4 -4.1 cytochrome C oxidase assembly protein compare
RR42_RS17665 -1.4 -2.1 chorismate lyase compare
RR42_RS18825 -1.4 -1.7 ubiquinol-cytochrome C reductase compare
RR42_RS04590 -1.4 -6.6 AsnC family transcriptional regulator compare
RR42_RS37045 -1.4 -1.6 thiamine biosynthesis protein ApbE compare
RR42_RS04585 -1.4 -6.2 amino acid dehydrogenase compare
RR42_RS01380 -1.4 -1.6 membrane protein compare
RR42_RS16965 -1.3 -4.4 ABC transporter compare
RR42_RS34255 -1.3 -5.4 aldehyde dehydrogenase compare
RR42_RS01910 -1.3 -6.4 cytochrome C oxidase subunit I compare
RR42_RS18485 -1.3 -1.2 glutaredoxin compare
RR42_RS20775 -1.3 -1.1 hypothetical protein compare
RR42_RS16260 -1.3 -0.8 phosphoadenosine phosphosulfate reductase compare
RR42_RS19445 -1.3 -4.9 TetR family transcriptional regulator compare
RR42_RS19885 -1.3 -1.2 aminoglycoside transporter compare
RR42_RS01505 -1.2 -1.7 tRNA-Cys compare
RR42_RS25200 -1.2 -2.7 TetR family transcriptional regulator compare
RR42_RS29865 -1.2 -2.5 hypothetical protein compare
RR42_RS09015 -1.2 -1.7 trigger factor compare
RR42_RS19090 -1.2 -1.3 cytochrome C compare
RR42_RS15050 -1.2 -6.1 DNA polymerase I compare
RR42_RS12925 -1.2 -1.9 ATPase compare
RR42_RS20195 -1.2 -1.1 ATPase F0F1 compare
RR42_RS21435 -1.2 -3.2 hypothetical protein compare
RR42_RS33575 -1.2 -2.0 hypothetical protein compare
RR42_RS29255 -1.2 -6.0 GTP cyclohydrolase compare
RR42_RS10365 -1.2 -2.8 ABC transporter compare
RR42_RS30640 -1.1 -4.7 DNA mismatch repair protein MutT compare
RR42_RS15895 -1.1 -4.5 uroporphyrinogen III methyltransferase compare
RR42_RS02250 -1.1 -2.8 GntR family transcriptional regulator compare
RR42_RS22495 -1.1 -3.3 hypothetical protein compare
RR42_RS22230 -1.1 -1.7 hypothetical protein compare
RR42_RS02310 -1.1 -2.3 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS19065 -1.1 -5.9 transcriptional regulator compare
RR42_RS34650 -1.1 -4.2 LacI family transcriptional regulator compare
RR42_RS32495 -1.1 -1.9 shikimate kinase compare
RR42_RS25625 -1.1 -2.2 LysR family transcriptional regulator compare
RR42_RS01780 -1.1 -5.3 glutathione synthetase compare
RR42_RS01880 -1.1 -4.0 cytochrome oxidase subunit I compare
RR42_RS31530 -1.1 -2.4 histidine kinase compare
RR42_RS10310 -1.1 -1.3 NADPH:quinone reductase compare
RR42_RS00955 -1.1 -4.1 hydroxymethylglutaryl-CoA lyase compare
RR42_RS14915 -1.0 -2.8 hypothetical protein compare
RR42_RS36315 -1.0 -2.6 fructose 2,6-bisphosphatase compare
RR42_RS13535 -1.0 -7.4 2-aminobenzoate-CoA ligase (EC 6.2.1.32) (from data) conserved
RR42_RS21820 -1.0 -2.0 GntR family transcriptional regulator compare
RR42_RS02045 -1.0 -6.4 GTPase compare
RR42_RS15745 -1.0 -4.1 group1 glycosyl transferase compare
RR42_RS28695 -1.0 -1.5 hypothetical protein compare
RR42_RS22360 -1.0 -1.3 hypothetical protein compare
RR42_RS02085 -1.0 -4.3 RNA polymerase subunit sigma-54 compare
RR42_RS23685 -1.0 -6.3 transcriptional regulator compare
RR42_RS16620 -1.0 -2.4 hypothetical protein compare
RR42_RS08945 -1.0 -1.2 hypothetical protein compare
RR42_RS34520 -1.0 -0.8 transposase compare
RR42_RS10415 -1.0 -1.1 hypothetical protein compare
RR42_RS02210 -1.0 -1.2 succinate dehydrogenase compare
RR42_RS04880 -1.0 -5.2 coproporphyrinogen III oxidase compare
RR42_RS12875 -1.0 -1.6 transcriptional regulator compare
RR42_RS34905 -0.9 -2.6 enoyl-CoA hydratase compare
RR42_RS18670 -0.9 -3.0 metal-dependent hydrolase compare
RR42_RS04895 -0.9 -5.7 serine/threonine protein phosphatase compare
RR42_RS04495 -0.9 -2.1 integration host factor subunit beta compare
RR42_RS07565 -0.9 -4.5 transcription accessory protein compare
RR42_RS26920 -0.9 -3.3 TetR family transcriptional regulator compare
RR42_RS17055 -0.9 -4.9 LuxR family transcriptional regulator compare
RR42_RS21295 -0.9 -2.0 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS14365 -0.9 -2.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS05485 -0.9 -1.5 polynucleotide phosphorylase/polyadenylase compare
RR42_RS17060 -0.9 -7.0 histidine kinase compare
RR42_RS06545 -0.9 -1.4 thioesterase compare
RR42_RS05290 -0.9 -1.9 ankyrin compare
RR42_RS02440 -0.9 -1.6 membrane protein compare
RR42_RS00715 -0.9 -1.8 ferritin compare
RR42_RS22030 -0.9 -1.9 hypothetical protein compare
RR42_RS07860 -0.9 -2.2 acetyltransferase compare
RR42_RS15775 -0.8 -4.1 N-acetylneuraminate synthase compare
RR42_RS15370 -0.8 -2.5 MarR family transcriptional regulator compare
RR42_RS01895 -0.8 -2.7 MFS transporter compare
RR42_RS12590 -0.8 -0.8 50S ribosomal protein L9 compare
RR42_RS24820 -0.8 -1.7 hypothetical protein compare
RR42_RS28955 -0.8 -2.5 transcriptional regulator compare
RR42_RS17375 -0.8 -1.0 hypothetical protein compare
RR42_RS34215 -0.8 -0.9 ferredoxin compare
RR42_RS02785 -0.8 -2.0 dimethyladenosine transferase compare
RR42_RS11520 -0.8 -1.8 ABC transporter ATP-binding protein compare
RR42_RS09245 -0.8 -2.7 hypothetical protein compare
RR42_RS29785 -0.8 -3.0 hypothetical protein compare
RR42_RS00875 -0.8 -5.5 isocitrate dehydrogenase compare
RR42_RS16525 -0.8 -1.8 anti-sigma factor compare
RR42_RS05810 -0.8 -0.9 RNA polymerase sigma factor compare
RR42_RS17105 -0.8 -4.4 Clp protease ClpX compare
RR42_RS33215 -0.8 -4.6 transferase compare
RR42_RS05985 -0.8 -5.2 esterase compare
RR42_RS18940 -0.8 -2.0 ABC transporter ATP-binding protein compare
RR42_RS06325 -0.8 -0.8 serine O-acetyltransferase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source L-Tryptophan in Cupriavidus basilensis FW507-4G11

For carbon source L-Tryptophan across organisms