Experiment set2IT080 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without Glutathione

200 most important genes:

  gene name fitness t score description  
BBR_RS18735 -7.6 -19.2 hypothetical protein compare
BBR_RS13040 -7.2 -5.0 CHAP domain-containing protein compare
BBR_RS10660 -7.2 -33.3 esterase compare
BBR_RS19240 -7.1 -13.7 LacI family transcriptional regulator compare
BBR_RS16750 -7.0 -8.3 ParA family protein compare
BBR_RS11025 -6.9 -17.8 aspartate-semialdehyde dehydrogenase compare
BBR_RS11020 -6.7 -15.0 ACT domain-containing protein compare
BBR_RS18570 -6.7 -11.2 phosphoserine transaminase compare
BBR_RS10445 -6.6 -20.0 HlyC/CorC family transporter compare
BBR_RS17370 -6.6 -6.4 ABC transporter substrate-binding protein compare
BBR_RS11015 -6.5 -14.6 aspartate kinase compare
BBR_RS17375 -6.5 -6.3 amino acid ABC transporter ATP-binding protein compare
BBR_RS13035 -6.5 -4.3 ABC transporter permease compare
BBR_RS19535 -6.4 -8.8 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS17365 -6.3 -6.2 ABC transporter permease compare
BBR_RS16970 -6.3 -4.4 phosphoglycerate dehydrogenase compare
BBR_RS13070 -6.1 -1.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS17615 -6.1 -11.8 phosphoserine phosphatase SerB compare
BBR_RS17990 -6.1 -14.2 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS14210 -6.1 -4.1 hypothetical protein compare
BBR_RS19475 -6.1 -21.8 AEC family transporter compare
BBR_RS19700 -6.1 -33.6 ATP-dependent chaperone ClpB compare
BBR_RS18690 -6.0 -7.1 diacylglycerol kinase compare
BBR_RS19165 -6.0 -4.1 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS18955 -5.9 -17.9 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS11205 -5.9 -4.0 HPr family phosphocarrier protein compare
BBR_RS19945 -5.8 -12.9 MarR family transcriptional regulator compare
BBR_RS18695 -5.7 -4.0 PRD domain-containing protein compare
BBR_RS10900 -5.7 -3.9 molecular chaperone DnaK compare
BBR_RS12235 -5.6 -1.8 hypothetical protein compare
BBR_RS15680 -5.5 -8.5 succinate--CoA ligase subunit alpha compare
BBR_RS10740 -5.4 -2.9 tRNA-Gly compare
BBR_RS15170 -5.4 -9.7 HlyC/CorC family transporter compare
BBR_RS15675 -5.4 -9.0 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS11595 -5.4 -6.4 50S ribosomal protein L9 compare
BBR_RS12460 -5.3 -9.6 LacI family DNA-binding transcriptional regulator compare
BBR_RS11210 -5.2 -6.2 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS16600 -5.1 -13.2 aconitate hydratase AcnA compare
BBR_RS20430 -5.1 -5.0 hypothetical protein compare
BBR_RS14070 -5.0 -4.9 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS18700 -5.0 -9.6 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS13030 -4.9 -6.6 cell division ATP-binding protein FtsE compare
BBR_RS16675 -4.9 -4.8 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS15085 -4.9 -2.6 3-dehydroquinate synthase compare
BBR_RS16820 -4.9 -4.6 RNA polymerase sigma factor RpoE compare
BBR_RS16540 -4.8 -7.5 XRE family transcriptional regulator compare
BBR_RS14215 -4.7 -6.1 peptidase compare
BBR_RS11505 -4.7 -21.3 TetR/AcrR family transcriptional regulator compare
BBR_RS15070 -4.7 -3.3 endolytic transglycosylase MltG compare
BBR_RS10620 -4.7 -4.6 phosphoprotein phosphatase compare
BBR_RS13700 -4.7 -15.0 diaminopimelate epimerase compare
BBR_RS12995 -4.7 -10.5 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS19555 -4.5 -30.1 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BBR_RS17460 -4.5 -10.5 TPM domain-containing protein compare
BBR_RS16965 -4.5 -3.1 ATP-dependent DNA helicase compare
BBR_RS15080 -4.4 -3.1 chorismate synthase compare
BBR_RS16155 -4.4 -11.9 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS13820 -4.3 -1.3 ATP-binding protein compare
BBR_RS12900 -4.3 -3.9 DeoR/GlpR transcriptional regulator compare
BBR_RS19740 -4.3 -20.5 DUF2142 domain-containing protein compare
BBR_RS17905 -4.3 -28.4 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS15520 -4.2 -2.9 shikimate 5-dehydrogenase compare
BBR_RS19470 -4.1 -23.9 succinyl-diaminopimelate desuccinylase compare
BBR_RS14260 -4.0 -1.8 ABC transporter ATP-binding protein compare
BBR_RS11720 -4.0 -9.1 DUF2469 domain-containing protein compare
BBR_RS14205 -4.0 -5.4 hypothetical protein compare
BBR_RS12545 -4.0 -3.8 DUF4012 domain-containing protein compare
BBR_RS19355 -3.9 -2.8 tRNA-Gly compare
BBR_RS13125 -3.9 -1.5 ABC transporter permease compare
BBR_RS16255 -3.9 -3.8 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS19190 -3.9 -11.8 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS11540 -3.8 -3.1 DUF1727 domain-containing protein compare
BBR_RS14365 -3.8 -11.0 hypothetical protein compare
BBR_RS14265 -3.8 -10.4 Solute-binding protein of ABC transporter system for metals compare
BBR_RS16605 -3.8 -11.3 hypothetical protein compare
BBR_RS11515 -3.7 -19.9 ammonium transporter compare
BBR_RS10910 -3.7 -15.9 molecular chaperone DnaJ compare
BBR_RS18725 -3.7 -5.6 ribonuclease HI compare
BBR_RS14370 -3.7 -3.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS19540 -3.6 -2.5 homoserine dehydrogenase compare
BBR_RS19760 -3.6 -3.6 polysaccharide ABC transporter ATPase compare
BBR_RS18745 -3.6 -2.1 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS16430 -3.6 -3.5 nucleotide pyrophosphatase compare
BBR_RS19155 -3.6 -9.3 phosphate ABC transporter, permease protein PstA compare
BBR_RS16610 -3.6 -5.5 hypothetical protein compare
BBR_RS17290 -3.6 -9.8 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS20465 -3.6 -11.9 chromosome partitioning protein compare
BBR_RS10555 -3.6 -2.7 DUF3073 domain-containing protein compare
BBR_RS19120 -3.6 -12.0 helicase compare
BBR_RS14625 -3.5 -9.1 pyrroline-5-carboxylate reductase compare
BBR_RS10625 -3.5 -2.6 FHA domain-containing protein compare
BBR_RS13740 -3.5 -6.4 DUF3052 domain-containing protein compare
BBR_RS19375 -3.4 -2.1 acyl-CoA carboxylase subunit beta compare
BBR_RS19265 -3.4 -12.5 pyrrolidone-carboxylate peptidase compare
BBR_RS12710 -3.3 -6.0 hypothetical protein compare
BBR_RS12660 -3.3 -9.2 EpsG family protein compare
BBR_RS19755 -3.3 -14.5 glycosyl transferase compare
BBR_RS15090 -3.2 -1.4 type II 3-dehydroquinate dehydratase compare
BBR_RS10720 -3.2 -15.1 PDZ domain-containing protein compare
BBR_RS15180 -3.2 -8.3 long-chain fatty acid--CoA ligase compare
BBR_RS14330 -3.1 -2.2 glycogen debranching enzyme GlgX compare
BBR_RS17360 -3.1 -5.2 amino acid ABC transporter permease compare
BBR_RS14655 -3.1 -7.4 AraC family transcriptional regulator compare
BBR_RS19055 -3.1 -2.4 ferredoxin family protein compare
BBR_RS15845 -3.0 -1.3 hypothetical protein compare
BBR_RS20450 -3.0 -16.8 murein biosynthesis integral membrane protein MurJ compare
BBR_RS12760 -2.9 -9.7 hypothetical protein compare
BBR_RS20920 -2.9 -5.1 hypothetical protein compare
BBR_RS13735 -2.9 -1.6 Lon protease compare
BBR_RS14230 -2.9 -7.3 HAMP domain-containing histidine kinase compare
BBR_RS20935 -2.9 -3.4 hypothetical protein compare
BBR_RS15915 -2.9 -1.2 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS19370 -2.9 -4.3 type I polyketide synthase compare
BBR_RS16670 -2.8 -3.4 hypothetical protein compare
BBR_RS18565 -2.8 -2.8 CHAP domain-containing protein compare
BBR_RS12295 -2.8 -1.2 RNA-binding protein compare
BBR_RS16425 -2.8 -5.0 DUF3071 domain-containing protein compare
BBR_RS19390 -2.8 -1.9 hypothetical protein compare
BBR_RS19125 -2.7 -12.3 hypothetical protein compare
BBR_RS11355 -2.7 -8.5 hypothetical protein compare
BBR_RS16240 -2.7 -4.8 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS12635 -2.6 -14.6 polysaccharide biosynthesis protein compare
BBR_RS16975 -2.6 -5.9 transcriptional repressor NrdR compare
BBR_RS14075 -2.6 -8.8 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS14660 -2.6 -2.8 transcriptional regulator compare
BBR_RS12905 -2.6 -4.1 galactose-1-phosphate uridylyltransferase compare
BBR_RS16940 -2.6 -4.2 hypothetical protein compare
BBR_RS12810 -2.6 -11.7 hypothetical protein compare
BBR_RS19260 -2.6 -18.6 hypothetical protein compare
BBR_RS11500 -2.6 -12.6 glycosyltransferase family 2 protein compare
BBR_RS19050 -2.5 -16.9 succinyldiaminopimelate transaminase compare
BBR_RS10755 -2.5 -7.0 adenylosuccinate synthase compare
BBR_RS15440 -2.5 -3.8 orotidine-5'-phosphate decarboxylase compare
BBR_RS11680 -2.5 -12.5 23S rRNA methyltransferase compare
BBR_RS12640 -2.5 -12.8 glycosyl transferase compare
BBR_RS19795 -2.5 -19.0 hypothetical protein compare
BBR_RS12705 -2.4 -13.3 hypothetical protein compare
BBR_RS17640 -2.4 -3.7 DNA-directed RNA polymerase subunit omega compare
BBR_RS11770 -2.4 -4.4 chorismate mutase compare
BBR_RS12770 -2.4 -5.0 hypothetical protein compare
BBR_RS15330 -2.4 -2.7 hypothetical protein compare
BBR_RS11675 -2.4 -1.8 hypothetical protein compare
BBR_RS16905 -2.4 -5.3 hypothetical protein compare
BBR_RS19905 -2.3 -1.2 methionine--tRNA ligase compare
BBR_RS12980 -2.3 -13.1 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS19160 -2.3 -1.7 phosphate ABC transporter permease subunit PstC compare
BBR_RS13835 -2.3 -7.6 FAD-dependent oxidoreductase compare
BBR_RS14240 -2.3 -6.1 1,4-alpha-glucan branching protein GlgB compare
BBR_RS18215 -2.2 -7.5 AI-2E family transporter compare
BBR_RS11220 -2.2 -12.8 YbhB/YbcL family Raf kinase inhibitor-like protein compare
BBR_RS16955 -2.2 -2.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH compare
BBR_RS12700 -2.2 -9.4 hypothetical protein compare
BBR_RS17455 -2.2 -8.3 DNA-binding response regulator compare
BBR_RS12855 -2.2 -5.1 glycine cleavage system protein H compare
BBR_RS15805 -2.2 -6.5 prolipoprotein diacylglyceryl transferase compare
BBR_RS12630 -2.2 -13.5 glycosyltransferase family 1 protein compare
BBR_RS20460 -2.2 -6.8 chromosome partitioning protein ParB compare
BBR_RS12355 -2.1 -5.1 ribonuclease III compare
BBR_RS19645 -2.1 -8.4 RNA degradosome polyphosphate kinase compare
BBR_RS12175 -2.1 -9.0 TetR/AcrR family transcriptional regulator compare
BBR_RS15130 -2.1 -1.5 metal-sulfur cluster assembly factor compare
BBR_RS15850 -2.0 -4.7 ASCH domain-containing protein compare
BBR_RS18050 -2.0 -3.8 threonylcarbamoyl-AMP synthase compare
BBR_RS12775 -2.0 -4.9 hypothetical protein compare
BBR_RS14280 -2.0 -2.1 dephospho-CoA kinase compare
BBR_RS15300 -2.0 -5.3 peroxiredoxin compare
BBR_RS14190 -2.0 -7.4 transcriptional regulator compare
BBR_RS19445 -2.0 -14.5 glutamate 5-kinase compare
BBR_RS14665 -2.0 -7.0 MATE family efflux transporter compare
BBR_RS20925 -2.0 -2.1 amino acid permease compare
BBR_RS15755 -1.9 -1.6 hypothetical protein compare
BBR_RS14540 -1.9 -4.0 Na+/H+ antiporter NhaA compare
BBR_RS12975 -1.9 -11.0 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS17720 -1.9 -10.8 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS14220 -1.9 -6.4 phosphomannomutase compare
BBR_RS17135 -1.9 -1.5 RluA family pseudouridine synthase compare
BBR_RS18180 -1.9 -9.3 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS18120 -1.9 -3.7 hypothetical protein compare
BBR_RS18375 -1.9 -10.9 ATP-dependent helicase compare
BBR_RS12380 -1.8 -4.8 DUF3039 domain-containing protein compare
BBR_RS18555 -1.8 -7.3 NlpC/P60 family protein compare
BBR_RS19450 -1.8 -1.7 GTPase ObgE compare
BBR_RS19095 -1.8 -8.4 magnesium transporter compare
BBR_RS12365 -1.8 -5.9 DUF177 domain-containing protein compare
BBR_RS18550 -1.8 -8.1 universal stress protein compare
BBR_RS13490 -1.8 -1.1 30S ribosomal protein S7 compare
BBR_RS12645 -1.7 -6.1 acyltransferase compare
BBR_RS15455 -1.7 -1.5 orotate phosphoribosyltransferase compare
BBR_RS20420 -1.7 -8.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS12650 -1.7 -8.8 polysaccharide pyruvyl transferase family protein compare
BBR_RS16655 -1.7 -4.6 tyrosine recombinase XerC compare
BBR_RS15230 -1.7 -3.9 elongation factor 4 compare
BBR_RS17505 -1.7 -10.4 VWA domain-containing protein compare
BBR_RS13510 -1.7 -6.3 LysR family transcriptional regulator compare
BBR_RS13420 -1.7 -1.8 DUF4230 domain-containing protein compare
BBR_RS13405 -1.7 -3.8 hypothetical protein compare
BBR_RS19325 -1.7 -2.3 hypothetical protein compare
BBR_RS20455 -1.6 -7.1 thioredoxin-disulfide reductase compare
BBR_RS19745 -1.6 -11.9 LTA synthase family protein compare
BBR_RS12310 -1.6 -1.6 signal recognition particle protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in nutrient dropout experiments

For nutrient dropout no Glutathione across organisms