Experiment set2IT080 for Burkholderia phytofirmans PsJN

Compare to:

LB with Nickel (II) chloride hexahydrate 1 mM

200 most important genes:

  gene name fitness t score description  
BPHYT_RS08850 -5.3 -3.6 transcriptional regulator compare
BPHYT_RS12465 -3.5 -6.3 inositol monophosphatase compare
BPHYT_RS16175 -3.3 -4.4 hemolysin D compare
BPHYT_RS33920 -3.1 -9.5 type II citrate synthase compare
BPHYT_RS16835 -3.1 -9.6 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS16710 -2.9 -2.2 LysR family transcriptional regulator compare
BPHYT_RS06610 -2.9 -2.9 triosephosphate isomerase compare
BPHYT_RS06920 -2.8 -7.8 iron permease FTR1 compare
BPHYT_RS02865 -2.8 -4.9 hypothetical protein compare
BPHYT_RS03725 -2.8 -2.6 serine hydroxymethyltransferase compare
BPHYT_RS06925 -2.7 -8.3 membrane protein compare
BPHYT_RS02965 -2.7 -3.3 membrane protein compare
BPHYT_RS23840 -2.7 -4.2 methyltransferase compare
BPHYT_RS16270 -2.6 -6.2 phosphoglycerate kinase compare
BPHYT_RS14865 -2.5 -4.3 UDP-glucose 6-dehydrogenase compare
BPHYT_RS14855 -2.4 -3.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06910 -2.2 -6.4 membrane protein compare
BPHYT_RS02590 -2.2 -8.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS17075 -2.2 -6.1 ABC transporter permease compare
BPHYT_RS06915 -2.0 -2.9 hypothetical protein compare
BPHYT_RS17700 -2.0 -4.2 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS04285 -2.0 -2.8 rhamnosyltransferase compare
BPHYT_RS15620 -2.0 -4.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS20295 -1.9 -13.6 ligand-gated channel compare
BPHYT_RS34660 -1.9 -8.4 DNA-binding protein compare
BPHYT_RS06195 -1.9 -3.0 membrane protein compare
BPHYT_RS06175 -1.9 -6.3 LPS biosynthesis compare
BPHYT_RS17685 -1.8 -6.9 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS03570 -1.8 -7.5 heat-inducible transcription repressor HrcA compare
BPHYT_RS01505 -1.8 -3.4 7-cyano-7-deazaguanine reductase compare
BPHYT_RS15710 -1.8 -3.0 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS14105 -1.7 -11.2 exopolyphosphatase compare
BPHYT_RS17690 -1.7 -9.4 imidazole glycerol phosphate synthase compare
BPHYT_RS07565 -1.7 -5.3 urocanate hydratase compare
BPHYT_RS03280 -1.7 -2.0 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS06975 -1.7 -1.7 glutamate racemase compare
BPHYT_RS01625 -1.6 -4.6 chemotaxis protein CheY compare
BPHYT_RS16340 -1.6 -7.8 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS04290 -1.6 -2.0 glycosyl transferase family 2 compare
BPHYT_RS12530 -1.6 -4.5 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS01500 -1.5 -11.7 7-cyano-7-deazaguanine synthase compare
BPHYT_RS17675 -1.5 -3.1 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS16840 -1.5 -3.4 transketolase compare
BPHYT_RS17670 -1.5 -3.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS01510 -1.5 -7.2 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
BPHYT_RS06325 -1.5 -4.7 ATPase compare
BPHYT_RS03495 -1.5 -5.1 hypothetical protein compare
BPHYT_RS12615 -1.5 -1.8 dihydrodipicolinate synthase compare
BPHYT_RS08125 -1.5 -8.4 ATPase compare
BPHYT_RS09315 -1.4 -1.2 chemotaxis protein CheY compare
BPHYT_RS06600 -1.4 -2.1 polynucleotide phosphorylase/polyadenylase compare
BPHYT_RS34810 -1.4 -5.2 RND transporter compare
BPHYT_RS04370 -1.4 -2.1 glycosyl transferase compare
BPHYT_RS22060 -1.4 -10.8 amino acid transporter conserved
BPHYT_RS17745 -1.4 -6.1 toluene tolerance family protein compare
BPHYT_RS02860 -1.4 -1.3 membrane protein compare
BPHYT_RS16345 -1.4 -4.3 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS17680 -1.4 -3.4 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS03135 -1.4 -6.7 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
BPHYT_RS03170 -1.4 -3.9 membrane protein compare
BPHYT_RS33150 -1.3 -1.1 beta-lactamase compare
BPHYT_RS09160 -1.3 -3.6 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS06400 -1.3 -4.3 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS06990 -1.3 -1.5 membrane protein compare
BPHYT_RS34815 -1.3 -2.0 ABC transporter compare
BPHYT_RS20155 -1.3 -1.5 hypothetical protein compare
BPHYT_RS09330 -1.3 -7.8 phytoene synthase compare
BPHYT_RS29520 -1.3 -1.1 hypothetical protein compare
BPHYT_RS06350 -1.3 -2.9 chemotaxis protein CheY compare
BPHYT_RS17530 -1.3 -5.8 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS02610 -1.2 -4.2 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS18590 -1.2 -1.0 hypothetical protein compare
BPHYT_RS17890 -1.2 -1.9 shikimate kinase compare
BPHYT_RS08945 -1.2 -7.6 hypothetical protein compare
BPHYT_RS17380 -1.2 -5.8 ribulose-phosphate 3-epimerase compare
BPHYT_RS31060 -1.2 -1.6 capsular polysaccharide biosynthesis protein compare
BPHYT_RS06320 -1.2 -2.7 chemotaxis protein CheY compare
BPHYT_RS17760 -1.2 -3.1 ABC transporter permease compare
BPHYT_RS12055 -1.1 -8.8 phosphoenolpyruvate synthase compare
BPHYT_RS15140 -1.1 -1.5 beta-hydroxyacyl-ACP dehydratase compare
BPHYT_RS35885 -1.1 -3.7 hypothetical protein compare
BPHYT_RS34805 -1.1 -5.5 ABC transporter compare
BPHYT_RS06155 -1.1 -4.7 DEAD/DEAH box helicase compare
BPHYT_RS33580 -1.1 -3.7 geranyltranstransferase compare
BPHYT_RS05730 -1.1 -4.2 hypothetical protein compare
BPHYT_RS02730 -1.1 -7.4 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) compare
BPHYT_RS29655 -1.1 -2.6 polysaccharide deacetylase compare
BPHYT_RS33630 -1.1 -2.1 chromate transporter compare
BPHYT_RS03400 -1.1 -1.3 ATP-dependent DNA helicase RecG compare
BPHYT_RS23910 -1.1 -1.9 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS23985 -1.1 -5.2 carbohydrate porin compare
BPHYT_RS03640 -1.1 -3.3 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS33965 -1.1 -1.9 methylcitrate synthase compare
BPHYT_RS07050 -1.0 -1.6 membrane protein compare
BPHYT_RS21335 -1.0 -1.9 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS30485 -1.0 -1.2 ABC transporter ATP-binding protein compare
BPHYT_RS19565 -1.0 -5.0 gamma-glutamyl:cysteine ligase compare
BPHYT_RS15615 -1.0 -3.4 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS05320 -1.0 -1.6 beta-lactamase compare
BPHYT_RS14740 -1.0 -5.7 threonine-phosphate decarboxylase compare
BPHYT_RS13390 -1.0 -1.0 IclR family transcriptional regulator compare
BPHYT_RS02815 -1.0 -2.4 methyltransferase compare
BPHYT_RS18635 -1.0 -2.6 LamB/YcsF family protein compare
BPHYT_RS03480 -1.0 -2.7 ferritin compare
BPHYT_RS05155 -1.0 -3.9 acetyltransferase GCN5 compare
BPHYT_RS28350 -1.0 -2.6 fatty acid desaturase compare
BPHYT_RS29695 -1.0 -1.9 hypothetical protein compare
BPHYT_RS14210 -1.0 -4.2 hydroxyacylglutathione hydrolase compare
BPHYT_RS19760 -1.0 -4.1 AraC family transcriptional regulator compare
BPHYT_RS00225 -1.0 -1.9 hypothetical protein compare
BPHYT_RS17885 -1.0 -3.8 3-dehydroquinate synthase compare
BPHYT_RS09690 -0.9 -1.3 phosphate starvation-inducible protein PsiF compare
BPHYT_RS17715 -0.9 -4.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS11795 -0.9 -1.1 membrane protein compare
BPHYT_RS05355 -0.9 -1.4 Crp/Fnr family transcriptional regulator compare
BPHYT_RS03410 -0.9 -2.0 queuine tRNA-ribosyltransferase compare
BPHYT_RS01425 -0.9 -3.0 3-phosphoglycerate dehydrogenase compare
BPHYT_RS06930 -0.9 -3.2 hypothetical protein compare
BPHYT_RS19570 -0.9 -7.1 sodium/hydrogen exchanger compare
BPHYT_RS06900 -0.9 -4.3 aspartate aminotransferase compare
BPHYT_RS29745 -0.9 -2.9 phosphonopyruvate decarboxylase compare
BPHYT_RS28790 -0.9 -1.8 membrane protein compare
BPHYT_RS11215 -0.9 -3.0 ribose ABC transporter ATPase compare
BPHYT_RS03755 -0.9 -2.1 pilus assembly protein PilE compare
BPHYT_RS12845 -0.9 -6.6 ATPase compare
BPHYT_RS11960 -0.9 -1.0 MarR family transcriptional regulator compare
BPHYT_RS11155 -0.9 -1.0 hypothetical protein compare
BPHYT_RS23770 -0.9 -1.4 GntR family transcriptional regulator compare
BPHYT_RS14125 -0.9 -1.5 transcriptional regulator compare
BPHYT_RS01315 -0.9 -2.1 cupin compare
BPHYT_RS24655 -0.9 -2.2 amino acid ABC transporter substrate-binding protein compare
BPHYT_RS14235 -0.8 -5.1 multidrug ABC transporter ATPase compare
BPHYT_RS26025 -0.8 -0.8 hypothetical protein compare
BPHYT_RS14195 -0.8 -1.7 carbamoyl phosphate synthase small subunit compare
BPHYT_RS01620 -0.8 -4.4 sensor histidine kinase compare
BPHYT_RS02600 -0.8 -1.6 glutaredoxin compare
BPHYT_RS20290 -0.8 -1.9 LysR family transcriptional regulator compare
BPHYT_RS10740 -0.8 -1.2 LuxR family transcriptional regulator compare
BPHYT_RS13750 -0.8 -4.9 D-2-hydroxyacid dehydrogenase compare
BPHYT_RS07215 -0.8 -2.2 LysR family transcriptional regulator compare
BPHYT_RS08560 -0.8 -3.9 cysteine ABC transporter substrate-binding protein compare
BPHYT_RS06190 -0.8 -2.8 heptosyltransferase compare
BPHYT_RS09260 -0.8 -2.4 histidine kinase compare
BPHYT_RS25480 -0.8 -3.3 hypothetical protein compare
BPHYT_RS04385 -0.8 -2.6 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS14550 -0.8 -0.9 tRNA-Asn compare
BPHYT_RS26340 -0.8 -2.6 cupin compare
BPHYT_RS33370 -0.8 -1.3 LysR family transcriptional regulator compare
BPHYT_RS16740 -0.8 -4.2 transcriptional regulator compare
BPHYT_RS05285 -0.8 -1.1 hypothetical protein compare
BPHYT_RS16350 -0.8 -2.1 hypothetical protein compare
BPHYT_RS34675 -0.8 -3.3 DNA-binding protein compare
BPHYT_RS16435 -0.8 -5.8 alcohol dehydrogenase compare
BPHYT_RS15415 -0.8 -5.9 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS14370 -0.8 -1.8 ribonuclease III compare
BPHYT_RS17830 -0.8 -1.2 histidine kinase compare
BPHYT_RS06710 -0.8 -1.0 hypothetical protein compare
BPHYT_RS15305 -0.8 -3.8 guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
BPHYT_RS33535 -0.7 -6.1 RNA polymerase sigma factor RpoD compare
BPHYT_RS12725 -0.7 -5.8 regulator compare
BPHYT_RS21990 -0.7 -2.0 FAD-dependent oxidoreductase compare
BPHYT_RS16055 -0.7 -2.4 sugar ABC transporter permease compare
BPHYT_RS16645 -0.7 -3.6 anhydro-N-acetylmuramic acid kinase compare
BPHYT_RS18270 -0.7 -5.2 phenylacetic acid degradation protein compare
BPHYT_RS08355 -0.7 -1.3 hypothetical protein compare
BPHYT_RS22355 -0.7 -0.8 HAD family hydrolase compare
BPHYT_RS26470 -0.7 -1.1 MFS transporter compare
BPHYT_RS17860 -0.7 -1.8 transposase compare
BPHYT_RS35535 -0.7 -2.5 arsenic transporter compare
BPHYT_RS16385 -0.7 -1.8 hypothetical protein compare
BPHYT_RS01940 -0.7 -3.9 16S rRNA methyltransferase compare
BPHYT_RS08765 -0.7 -0.8 ABC transporter ATP-binding protein compare
BPHYT_RS07275 -0.7 -3.6 kynureninase compare
BPHYT_RS25780 -0.7 -0.9 DeoR faimly transcriptional regulator compare
BPHYT_RS00940 -0.7 -1.9 transposase compare
BPHYT_RS11140 -0.7 -1.6 major facilitator transporter compare
BPHYT_RS05620 -0.7 -1.0 CsbD family protein compare
BPHYT_RS07515 -0.7 -1.7 photosystem reaction center subunit H compare
BPHYT_RS07350 -0.7 -1.9 ABC transporter ATP-binding protein compare
BPHYT_RS33850 -0.7 -1.1 sporulation protein compare
BPHYT_RS17765 -0.7 -3.0 toluene ABC transporter ATP-binding protein compare
BPHYT_RS34545 -0.7 -1.8 transcriptional regulator compare
BPHYT_RS06075 -0.7 -2.3 hypothetical protein compare
BPHYT_RS30040 -0.7 -0.9 hypothetical protein compare
BPHYT_RS07815 -0.7 -1.2 phosphonate transporter compare
BPHYT_RS17755 -0.7 -2.7 ABC transporter substrate-binding protein compare
BPHYT_RS06765 -0.7 -2.7 glutathione S-transferase compare
BPHYT_RS15915 -0.7 -3.7 ornithine carbamoyltransferase compare
BPHYT_RS16975 -0.7 -3.4 shikimate 5-dehydrogenase compare
BPHYT_RS26510 -0.7 -1.1 transcriptional regulator compare
BPHYT_RS11220 -0.7 -2.5 LacI family transcriptional regulator compare
BPHYT_RS02570 -0.7 -2.3 phosphocarrier protein HPr compare
BPHYT_RS17335 -0.7 -4.7 2,3-dehydroadipyl-CoA hydratase / enoyl-CoA hydratase (EC 4.2.1.17) (from data) compare
BPHYT_RS05235 -0.7 -0.8 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase compare
BPHYT_RS17100 -0.7 -2.8 RNA pyrophosphohydrolase compare
BPHYT_RS09980 -0.7 -0.9 TetR family transcriptional regulator compare
BPHYT_RS26310 -0.7 -1.3 ribonuclease R compare
BPHYT_RS23525 -0.7 -0.9 hypothetical protein compare
BPHYT_RS17165 -0.7 -2.1 cell division protein ZapD compare
BPHYT_RS18255 -0.7 -1.4 phenylacetate-CoA oxygenase subunit PaaB compare


Specific Phenotypes

For 10 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Burkholderia phytofirmans PsJN

For stress Nickel (II) chloride hexahydrate across organisms