Experiment set2IT080 for Burkholderia phytofirmans PsJN

Compare to:

LB with Nickel (II) chloride hexahydrate 1 mM

200 most detrimental genes:

  gene name fitness t score description  
BPHYT_RS23990 +5.3 13.0 N-hydroxyarylamine O-acetyltransferase compare
BPHYT_RS15015 +2.8 7.3 ArsR family transcriptional regulator compare
BPHYT_RS03110 +2.4 7.3 MarR family transcriptional regulator compare
BPHYT_RS09190 +2.4 8.4 cystathionine beta-lyase conserved
BPHYT_RS15470 +2.3 14.8 tRNA (guanine-N(7)-)-methyltransferase conserved
BPHYT_RS11705 +1.7 1.8 hypothetical protein compare
BPHYT_RS12985 +1.7 5.6 amino acid acetyltransferase compare
BPHYT_RS12455 +1.7 1.8 serine O-acetyltransferase compare
BPHYT_RS34780 +1.6 8.4 phytoene synthase compare
BPHYT_RS03470 +1.5 9.0 LysR family transcriptional regulator compare
BPHYT_RS03645 +1.5 2.9 tRNA dimethylallyltransferase compare
BPHYT_RS09815 +1.5 3.0 malate synthase compare
BPHYT_RS13605 +1.4 2.0 tRNA-Pro compare
BPHYT_RS21285 +1.4 5.8 hypothetical protein compare
BPHYT_RS05960 +1.3 7.9 endoribonuclease L-PSP compare
BPHYT_RS34185 +1.2 5.6 cold-shock protein compare
BPHYT_RS08080 +1.1 6.9 tRNA pseudouridine synthase B compare
BPHYT_RS28535 +1.1 1.5 response regulator receiver compare
BPHYT_RS30890 +1.1 2.2 hypothetical protein compare
BPHYT_RS19340 +1.1 7.5 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
BPHYT_RS01985 +1.1 3.3 hypothetical protein compare
BPHYT_RS03900 +1.1 1.5 phospholipid-binding protein compare
BPHYT_RS22860 +1.1 1.4 chemotaxis protein CheY compare
BPHYT_RS17520 +1.1 5.0 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS08245 +1.1 6.6 anti-sigma factor compare
BPHYT_RS01730 +1.0 2.1 serine/threonine protein kinase compare
BPHYT_RS14070 +1.0 3.3 hypothetical protein compare
BPHYT_RS17545 +1.0 4.8 cold-shock protein compare
BPHYT_RS25070 +1.0 1.9 choline ABC transporter permease compare
BPHYT_RS24010 +1.0 2.5 L-histidine ABC transporter, permease component 2 (from data) compare
BPHYT_RS10400 +1.0 1.4 taurine ABC transporter permease compare
BPHYT_RS26955 +1.0 1.3 succinylglutamate desuccinylase compare
BPHYT_RS33885 +1.0 7.4 tRNA pseudouridine synthase A compare
BPHYT_RS33890 +1.0 6.6 fimbrial protein FimV compare
BPHYT_RS31050 +1.0 1.4 epimerase compare
BPHYT_RS02660 +1.0 1.4 membrane protein compare
BPHYT_RS07425 +0.9 1.4 hypothetical protein compare
BPHYT_RS16065 +0.9 1.0 LacI family transcriptional regulator compare
BPHYT_RS13555 +0.9 1.8 acyl-CoA dehydrogenase compare
BPHYT_RS08190 +0.9 1.5 type II secretion system protein compare
BPHYT_RS13660 +0.9 4.0 aminoacrylate peracid reductase compare
BPHYT_RS22045 +0.9 4.0 peptide ABC transporter permease compare
BPHYT_RS00955 +0.9 2.6 DNA polymerase compare
BPHYT_RS10465 +0.9 2.8 hypothetical protein compare
BPHYT_RS20880 +0.9 1.2 polyketide cyclase compare
BPHYT_RS16090 +0.9 1.5 hypothetical protein compare
BPHYT_RS20715 +0.9 2.0 peptidase compare
BPHYT_RS07570 +0.9 1.3 hypothetical protein compare
BPHYT_RS15960 +0.9 6.2 iron-sulfur cluster binding protein compare
BPHYT_RS23995 +0.9 3.0 isoprenylcysteine carboxyl methyltransferase compare
BPHYT_RS12590 +0.9 1.7 dual-specificity RNA methyltransferase RlmN compare
BPHYT_RS09245 +0.9 1.3 ABC transporter ATP-binding protein compare
BPHYT_RS02905 +0.9 7.8 RNA polymerase subunit sigma-54 compare
BPHYT_RS24000 +0.9 3.1 L-histidine ABC transporter, substrate-binding component (from data) compare
BPHYT_RS30020 +0.9 2.1 arsenic transporter compare
BPHYT_RS26820 +0.8 1.8 LysR family transcriptional regulator compare
BPHYT_RS26975 +0.8 1.2 L-lactate dehydrogenase, LldE subunit (from data) compare
BPHYT_RS10750 +0.8 1.3 LysR family transcriptional regulator compare
BPHYT_RS36320 +0.8 2.8 type IV secretion system family protein compare
BPHYT_RS00380 +0.8 2.4 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
BPHYT_RS24580 +0.8 1.5 hypothetical protein compare
BPHYT_RS08665 +0.8 1.1 hypothetical protein compare
BPHYT_RS33515 +0.8 4.8 porin compare
BPHYT_RS30425 +0.8 1.5 LysR family transcriptional regulator compare
BPHYT_RS09155 +0.8 4.5 3-ketoacyl-ACP reductase compare
BPHYT_RS09860 +0.8 0.9 pilus assembly protein PilP compare
BPHYT_RS10470 +0.8 2.1 hypothetical protein compare
BPHYT_RS22470 +0.8 1.3 hydrolase compare
BPHYT_RS19325 +0.8 2.0 glycine cleavage system H protein compare
BPHYT_RS07960 +0.8 1.6 hypothetical protein compare
BPHYT_RS16985 +0.8 3.0 esterase compare
BPHYT_RS25470 +0.8 1.4 alkylhydroperoxidase compare
BPHYT_RS32905 +0.8 2.2 FAD-linked oxidase compare
BPHYT_RS30230 +0.8 2.4 LysR family transcriptional regulator compare
BPHYT_RS33845 +0.8 3.1 bacteriocin production protein compare
BPHYT_RS25210 +0.7 1.0 drug:proton antiporter compare
BPHYT_RS30880 +0.7 2.9 peptidase S13 compare
BPHYT_RS29550 +0.7 3.3 RND transporter compare
BPHYT_RS20365 +0.7 0.9 LysR family transcriptional regulator compare
BPHYT_RS12990 +0.7 2.5 iron transporter compare
BPHYT_RS04155 +0.7 2.3 polysaccharide deacetylase compare
BPHYT_RS35735 +0.7 1.5 nitroreductase compare
BPHYT_RS34410 +0.7 1.3 hypothetical protein compare
BPHYT_RS25005 +0.7 1.4 FMN reductase compare
BPHYT_RS00140 +0.7 3.4 MerR family transcriptional regulator compare
BPHYT_RS25075 +0.7 1.2 AraC family transcriptional regulator compare
BPHYT_RS19330 +0.7 4.3 glycine cleavage system P protein (EC 1.4.4.2) (from data) compare
BPHYT_RS28000 +0.7 1.7 permease compare
BPHYT_RS16000 +0.7 4.5 cyclopropane-fatty-acyl-phospholipid synthase compare
BPHYT_RS17490 +0.7 2.0 haloacid dehalogenase compare
BPHYT_RS10435 +0.7 2.0 ThiJ/PfpI domain-containing protein compare
BPHYT_RS20270 +0.7 1.6 L-ornithine 5-monooxygenase compare
BPHYT_RS26040 +0.7 1.6 cysteine hydrolase compare
BPHYT_RS14185 +0.7 2.2 transcription elongation factor GreA compare
BPHYT_RS35615 +0.7 1.8 hypothetical protein compare
BPHYT_RS30265 +0.7 1.0 hypothetical protein compare
BPHYT_RS35635 +0.7 1.3 nucleoside 2-deoxyribosyltransferase compare
BPHYT_RS21330 +0.7 1.4 hypothetical protein compare
BPHYT_RS02880 +0.7 1.3 ATP-dependent protease compare
BPHYT_RS23455 +0.7 1.0 phosphorylase compare
BPHYT_RS26570 +0.7 0.9 5'-nucleotidase compare
BPHYT_RS11555 +0.7 1.9 allantoinase compare
BPHYT_RS28670 +0.7 1.6 MFS transporter compare
BPHYT_RS33990 +0.7 0.9 ATPase compare
BPHYT_RS36540 +0.7 2.2 hypothetical protein compare
BPHYT_RS08955 +0.7 2.1 homoserine dehydrogenase compare
BPHYT_RS16815 +0.7 1.7 ureidoglycolate hydrolase compare
BPHYT_RS29855 +0.7 0.9 protein-tyrosine-phosphatase compare
BPHYT_RS08410 +0.7 0.8 dehydrogenase compare
BPHYT_RS11635 +0.7 0.9 RNA polymerase subunit sigma-24 compare
BPHYT_RS07925 +0.7 1.8 glutamine amidotransferase compare
BPHYT_RS36495 +0.7 2.5 peptidase compare
BPHYT_RS16265 +0.7 2.2 hypothetical protein compare
BPHYT_RS36150 +0.7 1.7 hypothetical protein compare
BPHYT_RS04670 +0.6 2.1 sulfurtransferase compare
BPHYT_RS06335 +0.6 1.0 CopG family transcriptional regulator compare
BPHYT_RS25080 +0.6 0.8 glycine/betaine ABC transporter substrate-binding protein compare
BPHYT_RS19435 +0.6 1.3 16S rRNA methyltransferase compare
BPHYT_RS28690 +0.6 1.0 diguanylate phosphodiesterase compare
BPHYT_RS32830 +0.6 2.0 AraC family transcriptional regulator compare
BPHYT_RS34975 +0.6 1.9 L-aspartate dehydrogenase compare
BPHYT_RS27330 +0.6 1.2 hypothetical protein compare
BPHYT_RS19025 +0.6 3.7 transcriptional regulator compare
BPHYT_RS08455 +0.6 4.6 ribonuclease R compare
BPHYT_RS08700 +0.6 3.0 tRNA-dihydrouridine synthase A compare
BPHYT_RS35565 +0.6 1.6 activator of HSP90 ATPase compare
BPHYT_RS35575 +0.6 3.9 transcriptional regulator compare
BPHYT_RS36385 +0.6 0.8 TetR family transcriptional regulator compare
BPHYT_RS25820 +0.6 1.8 sugar ABC transporter compare
BPHYT_RS34940 +0.6 1.3 3-phenylpropionate dioxygenase compare
BPHYT_RS23030 +0.6 1.1 gluconate 2-dehydrogenase compare
BPHYT_RS02710 +0.6 0.9 hypothetical protein compare
BPHYT_RS20055 +0.6 2.4 hypothetical protein compare
BPHYT_RS36485 +0.6 2.1 hypothetical protein compare
BPHYT_RS24925 +0.6 1.1 cytochrome O ubiquinol oxidase compare
BPHYT_RS09510 +0.6 3.1 amino acid dehydrogenase compare
BPHYT_RS28900 +0.6 1.3 2-oxo-hepta-3-ene-1,7-dioic acid hydratase compare
BPHYT_RS13170 +0.6 1.7 ATPase compare
BPHYT_RS01435 +0.6 5.4 LysR family transcriptional regulator compare
BPHYT_RS20115 +0.6 1.8 transcriptional regulator compare
BPHYT_RS34370 +0.6 4.1 ATPase compare
BPHYT_RS08565 +0.6 0.6 dihydroorotate dehydrogenase compare
BPHYT_RS10040 +0.6 0.8 hypothetical protein compare
BPHYT_RS26920 +0.6 3.2 major facilitator transporter compare
BPHYT_RS21925 +0.6 2.1 formimidoylglutamase compare
BPHYT_RS33125 +0.6 1.3 hypothetical protein compare
BPHYT_RS18745 +0.6 2.6 coniferyl aldehyde dehydrogenase compare
BPHYT_RS05615 +0.6 1.2 hypothetical protein compare
BPHYT_RS34635 +0.6 2.6 50S ribosomal protein L21 compare
BPHYT_RS08615 +0.6 1.0 hypothetical protein compare
BPHYT_RS33460 +0.6 0.8 protocatechuate 3,4-dioxygenase subunit alpha compare
BPHYT_RS24055 +0.6 2.4 oxidoreductase compare
BPHYT_RS15760 +0.6 2.3 nickel transporter compare
BPHYT_RS11790 +0.6 2.3 fumarylacetoacetase compare
BPHYT_RS23035 +0.6 1.0 hypothetical protein compare
BPHYT_RS28190 +0.6 2.5 porin compare
BPHYT_RS17660 +0.6 2.0 HIT family hydrolase compare
BPHYT_RS33905 +0.6 1.2 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS28680 +0.6 0.9 porin compare
BPHYT_RS32915 +0.6 2.0 LysR family transcriptional regulator compare
BPHYT_RS07380 +0.6 1.5 membrane protein compare
BPHYT_RS35165 +0.6 2.1 peptidase compare
BPHYT_RS28995 +0.6 3.0 histidine kinase compare
BPHYT_RS21235 +0.6 1.5 hypothetical protein compare
BPHYT_RS05245 +0.6 1.3 hypothetical protein compare
BPHYT_RS13815 +0.6 1.6 hypothetical protein compare
BPHYT_RS28215 +0.6 1.6 D-ribose transporter ATP binding protein compare
BPHYT_RS08170 +0.6 1.4 pilus assembly protein CpaB compare
BPHYT_RS17140 +0.6 3.2 magnesium and cobalt efflux protein CorC compare
BPHYT_RS06530 +0.6 1.3 membrane protein compare
BPHYT_RS25980 +0.6 0.7 urea carboxylase compare
BPHYT_RS35645 +0.6 2.4 porin compare
BPHYT_RS20940 +0.6 1.4 citrate synthase compare
BPHYT_RS14250 +0.6 3.9 glycosyl transferase compare
BPHYT_RS07920 +0.6 1.4 hypothetical protein compare
BPHYT_RS36570 +0.6 1.2 histone compare
BPHYT_RS25100 +0.5 1.5 serine dehydratase compare
BPHYT_RS00130 +0.5 4.4 ATPase P compare
BPHYT_RS28985 +0.5 3.1 hypothetical protein compare
BPHYT_RS16180 +0.5 0.7 TetR family transcriptional regulator compare
BPHYT_RS27195 +0.5 1.8 LacI family transcriptional regulator compare
BPHYT_RS32605 +0.5 1.7 hypothetical protein compare
BPHYT_RS00920 +0.5 1.6 transposase compare
BPHYT_RS05205 +0.5 2.3 cell envelope biogenesis protein TonB compare
BPHYT_RS20970 +0.5 1.1 hypothetical protein compare
BPHYT_RS30200 +0.5 2.8 FAD-dependent oxidoreductase compare
BPHYT_RS24625 +0.5 2.6 hypothetical protein compare
BPHYT_RS22540 +0.5 0.7 metal ABC transporter permease compare
BPHYT_RS35495 +0.5 1.3 nucleotide pyrophosphohydrolase compare
BPHYT_RS18780 +0.5 3.6 flagellar motor switch protein FliG compare
BPHYT_RS26045 +0.5 2.3 ABC transporter permease compare
BPHYT_RS22050 +0.5 3.2 peptide ABC transporter substrate-binding protein compare
BPHYT_RS29975 +0.5 1.8 multidrug ABC transporter ATP-binding protein compare
BPHYT_RS01790 +0.5 4.0 LuxR family transcriptional regulator compare
BPHYT_RS04425 +0.5 1.6 UDP-phosphate galactose phosphotransferase compare
BPHYT_RS21650 +0.5 0.8 cobalamin synthesis protein P47K compare
BPHYT_RS27830 +0.5 1.4 universal stress protein A compare
BPHYT_RS11500 +0.5 1.5 ABC transporter permease compare
BPHYT_RS13915 +0.5 0.7 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase compare
BPHYT_RS20545 +0.5 1.1 hypothetical protein compare


Specific Phenotypes

For 10 genes in this experiment

For stress Nickel (II) chloride hexahydrate in Burkholderia phytofirmans PsJN

For stress Nickel (II) chloride hexahydrate across organisms