Experiment set2IT079 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with Chromium(III) Chloride Hexahydrate 0.078125 mM

200 most important genes:

  gene name fitness t score description  
LRK54_RS17505 -4.0 -2.7 preprotein translocase subunit SecG compare
LRK54_RS10065 -3.8 -2.6 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS11560 -3.7 -5.1 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS02895 -3.6 -5.0 rhomboid family intramembrane serine protease compare
LRK54_RS04585 -3.5 -2.4 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS02495 -3.4 -7.3 50S ribosomal protein L19 compare
LRK54_RS14590 -3.4 -5.2 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS02185 -3.4 -4.6 exodeoxyribonuclease V subunit alpha compare
LRK54_RS00440 -3.3 -6.0 high frequency lysogenization protein HflD compare
LRK54_RS08585 -3.3 -19.8 RimK family alpha-L-glutamate ligase compare
LRK54_RS16945 -3.3 -5.4 sigma-E factor negative regulatory protein compare
LRK54_RS14695 -3.3 -12.8 rhomboid family intramembrane serine protease compare
LRK54_RS14825 -3.3 -4.5 protease HtpX compare
LRK54_RS05785 -3.2 -4.9 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS00620 -3.2 -8.8 FtsH protease activity modulator HflK compare
LRK54_RS04305 -3.2 -3.8 shikimate kinase compare
LRK54_RS16940 -3.2 -2.2 RNA polymerase sigma factor RpoE compare
LRK54_RS12865 -3.2 -7.9 HPr(Ser) kinase/phosphatase compare
LRK54_RS11570 -3.1 -4.8 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS11975 -3.1 -5.6 SLC13 family permease compare
LRK54_RS03110 -3.1 -9.0 nucleotidyltransferase family protein compare
LRK54_RS04350 -3.1 -4.3 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS10170 -3.1 -23.6 YbaY family lipoprotein compare
LRK54_RS01680 -3.1 -7.5 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS06685 -3.1 -11.8 TolC family outer membrane protein compare
LRK54_RS04140 -3.1 -6.6 inositol-phosphate phosphatase compare
LRK54_RS12945 -3.1 -6.8 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS12670 -3.0 -8.0 glycosyltransferase compare
LRK54_RS04720 -3.0 -6.7 phosphoribosylformylglycinamidine synthase compare
LRK54_RS03710 -3.0 -8.9 tetratricopeptide repeat protein compare
LRK54_RS00345 -3.0 -4.9 TraB/GumN family protein compare
LRK54_RS12860 -2.9 -4.5 RNase adapter RapZ compare
LRK54_RS03290 -2.9 -2.0 RIP metalloprotease RseP compare
LRK54_RS04450 -2.9 -8.6 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS12595 -2.9 -4.7 (2Fe-2S)-binding protein compare
LRK54_RS06885 -2.8 -6.6 rhodanese-like domain-containing protein compare
LRK54_RS00615 -2.8 -6.3 protease modulator HflC compare
LRK54_RS05415 -2.8 -6.5 TetR/AcrR family transcriptional regulator compare
LRK54_RS06755 -2.8 -18.5 LTA synthase family protein compare
LRK54_RS16660 -2.8 -9.6 VTT domain-containing protein compare
LRK54_RS01685 -2.8 -12.3 tryptophan synthase subunit beta compare
LRK54_RS00675 -2.8 -10.4 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS05980 -2.8 -1.9 ATP-binding protein compare
LRK54_RS08760 -2.7 -2.6 transaldolase compare
LRK54_RS05650 -2.7 -3.2 ABC transporter ATP-binding protein compare
LRK54_RS06470 -2.7 -10.8 carboxy terminal-processing peptidase compare
LRK54_RS00670 -2.7 -2.6 OmpA family protein compare
LRK54_RS16155 -2.7 -2.4 folate-binding protein compare
LRK54_RS12855 -2.7 -5.9 PTS fructose transporter subunit IIA compare
LRK54_RS03895 -2.7 -14.4 lipopolysaccharide biosynthesis protein compare
LRK54_RS03125 -2.7 -1.8 preprotein translocase subunit YajC compare
LRK54_RS05985 -2.7 -1.8 response regulator transcription factor compare
LRK54_RS17270 -2.6 -2.6 DNA translocase FtsK compare
LRK54_RS03185 -2.6 -7.0 phosphoglycerate dehydrogenase compare
LRK54_RS02090 -2.6 -15.4 NAD-glutamate dehydrogenase compare
LRK54_RS11170 -2.6 -4.3 NADP-dependent malic enzyme compare
LRK54_RS04625 -2.6 -12.6 serine hydroxymethyltransferase compare
LRK54_RS00085 -2.6 -1.8 tetratricopeptide repeat protein compare
LRK54_RS12590 -2.5 -12.9 molybdopterin-dependent oxidoreductase compare
LRK54_RS10355 -2.5 -3.0 threonine synthase compare
LRK54_RS12295 -2.5 -3.8 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS05655 -2.5 -2.9 ABC transporter permease compare
LRK54_RS09805 -2.5 -5.7 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS00420 -2.4 -16.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK54_RS16755 -2.4 -2.9 SurA N-terminal domain-containing protein compare
LRK54_RS02070 -2.4 -6.4 acyl-CoA dehydrogenase family protein compare
LRK54_RS06785 -2.4 -1.7 protein-disulfide reductase DsbD compare
LRK54_RS00305 -2.4 -10.9 asparagine synthase B compare
LRK54_RS13760 -2.4 -9.1 trypsin-like peptidase domain-containing protein compare
LRK54_RS02445 -2.4 -4.1 membrane protein insertion efficiency factor YidD compare
LRK54_RS01280 -2.3 -2.3 MBL fold metallo-hydrolase compare
LRK54_RS16865 -2.3 -9.3 protein phosphatase 2C domain-containing protein compare
LRK54_RS02380 -2.3 -6.2 argininosuccinate lyase compare
LRK54_RS15035 -2.3 -6.9 M48 family metalloprotease compare
LRK54_RS02535 -2.3 -5.5 50S ribosomal protein L9 compare
LRK54_RS02855 -2.3 -5.9 type I restriction-modification system subunit M compare
LRK54_RS05740 -2.3 -6.7 phosphoglycerate kinase compare
LRK54_RS07310 -2.3 -11.6 pteridine reductase compare
LRK54_RS12460 -2.2 -2.6 hypothetical protein compare
LRK54_RS02435 -2.2 -17.4 TonB-dependent siderophore receptor compare
LRK54_RS11565 -2.2 -4.2 anthranilate phosphoribosyltransferase compare
LRK54_RS00680 -2.2 -10.6 TerC family protein compare
LRK54_RS02180 -2.2 -7.7 UvrD-helicase domain-containing protein compare
LRK54_RS04710 -2.2 -4.3 glycosyltransferase family 2 protein compare
LRK54_RS00400 -2.1 -12.7 3-phosphoserine/phosphohydroxythreonine transaminase compare
LRK54_RS11415 -2.1 -13.2 anthranilate synthase component I compare
LRK54_RS18050 -2.1 -11.6 lipopolysaccharide assembly protein LapB compare
LRK54_RS02460 -2.1 -9.8 phosphoglycolate phosphatase compare
LRK54_RS02175 -2.1 -9.1 exodeoxyribonuclease V subunit gamma compare
LRK54_RS11375 -2.1 -8.0 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS11175 -2.1 -7.2 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS12190 -2.0 -6.9 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS10855 -2.0 -4.3 protein-export chaperone SecB compare
LRK54_RS01285 -2.0 -6.1 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS05770 -2.0 -14.2 energy transducer TonB compare
LRK54_RS09345 -2.0 -2.0 ATP-binding protein compare
LRK54_RS02440 -2.0 -2.2 RNA polymerase-binding protein DksA compare
LRK54_RS06675 -2.0 -8.6 TetR/AcrR family transcriptional regulator compare
LRK54_RS04920 -2.0 -8.9 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK54_RS05530 -1.9 -7.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS03675 -1.9 -2.6 redox-regulated ATPase YchF compare
LRK54_RS06795 -1.9 -6.3 type II 3-dehydroquinate dehydratase compare
LRK54_RS05550 -1.9 -2.8 FAD-binding protein compare
LRK54_RS00695 -1.9 -4.7 methylisocitrate lyase compare
LRK54_RS15105 -1.9 -6.6 polynucleotide adenylyltransferase PcnB compare
LRK54_RS00690 -1.9 -10.5 2-methylcitrate synthase compare
LRK54_RS05200 -1.8 -3.0 hypothetical protein compare
LRK54_RS01585 -1.8 -6.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS05495 -1.8 -4.4 met regulon transcriptional regulator MetJ compare
LRK54_RS00395 -1.8 -3.7 prephenate dehydratase compare
LRK54_RS02275 -1.8 -4.6 enoyl-CoA hydratase-related protein compare
LRK54_RS16730 -1.8 -2.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS08750 -1.8 -4.5 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS01580 -1.8 -4.9 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS05775 -1.8 -9.1 pyruvate kinase compare
LRK54_RS02335 -1.7 -6.7 FUSC family protein compare
LRK54_RS16720 -1.7 -6.6 trigger factor compare
LRK54_RS00775 -1.7 -8.9 translational GTPase TypA compare
LRK54_RS16950 -1.7 -11.9 Do family serine endopeptidase compare
LRK54_RS08595 -1.7 -7.7 shikimate dehydrogenase compare
LRK54_RS06610 -1.7 -11.8 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS15095 -1.7 -6.9 ferredoxin family protein compare
LRK54_RS13780 -1.7 -6.3 glutathione S-transferase N-terminal domain-containing protein compare
LRK54_RS05615 -1.7 -10.6 hypothetical protein compare
LRK54_RS16615 -1.7 -2.2 phosphopyruvate hydratase compare
LRK54_RS17900 -1.7 -2.7 4a-hydroxytetrahydrobiopterin dehydratase compare
LRK54_RS16650 -1.6 -6.5 5'/3'-nucleotidase SurE compare
LRK54_RS00080 -1.6 -8.9 helix-turn-helix domain-containing protein compare
LRK54_RS01590 -1.6 -7.0 imidazole glycerol phosphate synthase subunit HisH compare
LRK54_RS13830 -1.6 -8.0 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS16955 -1.6 -9.9 translation elongation factor 4 compare
LRK54_RS08930 -1.6 -5.2 XRE family transcriptional regulator compare
LRK54_RS00805 -1.6 -3.5 segregation/condensation protein A compare
LRK54_RS10950 -1.6 -9.8 S41 family peptidase compare
LRK54_RS05610 -1.5 -7.3 GtrA family protein compare
LRK54_RS04545 -1.5 -7.5 hemin uptake protein HemP compare
LRK54_RS15265 -1.5 -7.7 acetyl-CoA C-acyltransferase compare
LRK54_RS06850 -1.5 -10.9 DNA helicase II compare
LRK54_RS12625 -1.5 -8.2 bifunctional aspartate kinase/diaminopimelate decarboxylase compare
LRK54_RS06515 -1.5 -4.7 rod shape-determining protein MreD compare
LRK54_RS04995 -1.5 -3.8 LacI family DNA-binding transcriptional regulator compare
LRK54_RS16930 -1.4 -8.1 hypothetical protein compare
LRK54_RS06495 -1.4 -9.6 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS03130 -1.4 -5.9 tRNA guanosine(34) transglycosylase Tgt compare
LRK54_RS16665 -1.4 -7.9 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS02870 -1.4 -4.8 DUF502 domain-containing protein compare
LRK54_RS08670 -1.4 -8.2 LacI family transcriptional regulator compare
LRK54_RS11285 -1.4 -4.4 ABC transporter ATP-binding protein compare
LRK54_RS16600 -1.4 -7.5 aminopeptidase P family protein compare
LRK54_RS08335 -1.4 -3.8 MbcA/ParS/Xre antitoxin family protein compare
LRK54_RS16875 -1.4 -10.7 kinase/pyrophosphorylase compare
LRK54_RS10185 -1.4 -10.3 RDD family protein compare
LRK54_RS05765 -1.4 -7.1 fructose-bisphosphate aldolase class I compare
LRK54_RS13675 -1.4 -1.0 methyl-accepting chemotaxis protein compare
LRK54_RS10150 -1.4 -1.8 DNA topoisomerase I compare
LRK54_RS16110 -1.4 -6.5 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS03405 -1.4 -6.6 ribonuclease G compare
LRK54_RS12300 -1.4 -4.2 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS13910 -1.4 -5.1 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS07085 -1.3 -10.4 heme o synthase compare
LRK54_RS16935 -1.3 -9.9 bifunctional diguanylate cyclase/phosphodiesterase compare
LRK54_RS07020 -1.3 -2.0 ABC transporter permease compare
LRK54_RS02325 -1.3 -2.4 SDR family oxidoreductase compare
LRK54_RS02285 -1.3 -8.3 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS15165 -1.3 -3.0 enoyl-CoA hydratase-related protein compare
LRK54_RS04365 -1.3 -1.6 H-NS histone family protein compare
LRK54_RS14815 -1.3 -6.8 beta-ketoacyl-ACP reductase compare
LRK54_RS04050 -1.3 -7.0 glycoside hydrolase compare
LRK54_RS00635 -1.3 -1.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS14460 -1.3 -6.6 septum site-determining protein MinD compare
LRK54_RS15935 -1.3 -6.8 rRNA pseudouridine synthase compare
LRK54_RS11765 -1.2 -6.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
LRK54_RS01700 -1.2 -4.4 tRNA pseudouridine(38-40) synthase TruA compare
LRK54_RS12010 -1.2 -6.3 response regulator transcription factor compare
LRK54_RS01340 -1.2 -8.7 amidophosphoribosyltransferase compare
LRK54_RS18060 -1.2 -4.6 polysaccharide biosynthesis protein compare
LRK54_RS01410 -1.2 -8.9 ABC transporter ATP-binding protein/permease compare
LRK54_RS00815 -1.2 -4.3 pseudouridine synthase compare
LRK54_RS16740 -1.2 -1.7 HU family DNA-binding protein compare
LRK54_RS18055 -1.2 -4.1 glycosyltransferase family 4 protein compare
LRK54_RS00405 -1.2 -4.5 FHA domain-containing protein compare
LRK54_RS15325 -1.2 -0.9 hypothetical protein compare
LRK54_RS00435 -1.2 -8.6 tRNA 2-thiouridine(34) synthase MnmA compare
LRK54_RS04445 -1.1 -2.6 ABC transporter ATP-binding protein compare
LRK54_RS06420 -1.1 -1.5 hypothetical protein compare
LRK54_RS16810 -1.1 -2.3 hypothetical protein compare
LRK54_RS17400 -1.1 -1.0 hypothetical protein compare
LRK54_RS11830 -1.1 -9.5 penicillin-binding protein 1A compare
LRK54_RS05645 -1.1 -8.5 glycosyltransferase compare
LRK54_RS09655 -1.1 -3.7 6-carboxytetrahydropterin synthase QueD compare
LRK54_RS01520 -1.1 -8.2 amino acid permease compare
LRK54_RS14980 -1.1 -5.6 recombinase RecA compare
LRK54_RS16800 -1.1 -2.7 hypothetical protein compare
LRK54_RS03775 -1.1 -3.3 hypothetical protein compare
LRK54_RS14730 -1.1 -5.5 ABC transporter permease compare
LRK54_RS12725 -1.1 -6.5 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
LRK54_RS18005 -1.1 -5.2 transcription elongation factor GreA compare
LRK54_RS05735 -1.1 -6.8 maleylacetoacetate isomerase compare
LRK54_RS00795 -1.1 -7.8 long-chain-fatty-acid--CoA ligase compare
LRK54_RS02550 -1.1 -2.3 iron-sulfur cluster assembly accessory protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Chromium(III) Chloride Hexahydrate in Rhodanobacter denitrificans FW104-10B01

For stress Chromium(III) Chloride Hexahydrate across organisms