Experiment set2IT079 for Xanthomonas campestris pv. campestris strain 8004

Compare to:

1664 hydathodes 6 dpi (Dna extract from 8 * 200 hydathodes and pooled together)

200 most important genes:

  gene name fitness t score description  
Xcc-8004.1050.1 -5.6 -3.9 3-isopropylmalate dehydratase small subunit (EC 4.2.1.33) compare
Xcc-8004.2011.1 -5.4 -3.3 Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) compare
Xcc-8004.3536.1 -5.3 -3.7 FIG01210913: hypothetical protein compare
Xcc-8004.4481.1 -4.9 -5.8 hypothetical protein compare
Xcc-8004.622.1 -4.8 -3.3 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Xcc-8004.2946.1 -4.6 -6.2 Histidinol-phosphatase (EC 3.1.3.15) / Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Xcc-8004.1962.1 -4.6 -3.8 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Xcc-8004.956.1 -4.5 -6.9 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) compare
Xcc-8004.1967.1 -4.4 -8.9 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Xcc-8004.703.1 -4.3 -1.9 hypothetical protein compare
Xcc-8004.618.1 -4.3 -4.2 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Xcc-8004.2387.1 -4.2 -2.9 UTP--glucose-1-phosphate uridylyltransferase (EC 2.7.7.9) compare
Xcc-8004.3281.1 -4.1 -7.3 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) compare
Xcc-8004.4026.1 -4.0 -7.6 FIG01209666: hypothetical protein compare
Xcc-8004.621.1 -4.0 -6.3 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Xcc-8004.2012.1 -4.0 -7.9 Phosphoribosylaminoimidazole carboxylase ATPase subunit (EC 4.1.1.21) compare
Xcc-8004.1964.1 -3.9 -14.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Xcc-8004.271.1 -3.9 -2.7 Glycerol-3-phosphate dehydrogenase [NAD(P)+] (EC 1.1.1.94) compare
Xcc-8004.451.1 -3.9 -5.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Xcc-8004.1049.1 -3.8 -9.4 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Xcc-8004.2322.1 -3.8 -5.8 N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) compare
Xcc-8004.4073.1 -3.8 -12.8 Amidophosphoribosyltransferase (EC 2.4.2.14) compare
Xcc-8004.4824.1 -3.8 -13.1 Beta-glucosidase (EC 3.2.1.21) compare
Xcc-8004.1615.1 -3.8 -2.3 3-dehydroquinate synthase (EC 4.2.3.4) compare
Xcc-8004.1053.1 -3.8 -8.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Xcc-8004.2079.1 -3.7 -4.3 Outer membrane protein GumB, involved in the export of xanthan compare
Xcc-8004.4738.1 -3.6 -9.3 Lipopolysaccharide core biosynthesis glycosyl transferase compare
Xcc-8004.1660.1 -3.5 -1.1 PTS system nitrogen-specific IIA component, PtsN compare
Xcc-8004.2943.1 -3.5 -7.5 Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-) compare
Xcc-8004.608.1 -3.4 -10.1 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Xcc-8004.1082.1 -3.4 -2.2 FIG01211203: hypothetical protein compare
Xcc-8004.2318.1 -3.4 -7.1 Argininosuccinate synthase (EC 6.3.4.5) compare
Xcc-8004.3282.1 -3.4 -8.4 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Xcc-8004.4439.1 -3.4 -12.3 Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3) compare
Xcc-8004.2945.1 -3.4 -3.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Xcc-8004.2319.1 -3.4 -4.0 Acetylornithine deacetylase (EC 3.5.1.16) compare
Xcc-8004.505.1 -3.3 -10.2 Biotin synthase (EC 2.8.1.6) compare
Xcc-8004.1676.1 -3.2 -6.3 Phosphoribosylformylglycinamidine cyclo-ligase (EC 6.3.3.1) compare
Xcc-8004.1060.1 -3.2 -11.2 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Xcc-8004.1336.1 -3.2 -9.2 two-component system sensor protein compare
Xcc-8004.3855.1 -3.2 -8.1 FIG01209965: hypothetical protein compare
Xcc-8004.4844.1 -3.2 -1.4 FIG01210764: hypothetical protein compare
Xcc-8004.4620.1 -3.1 -10.1 Alanine racemase (EC 5.1.1.1) compare
Xcc-8004.657.1 -3.1 -6.9 Phosphoribosylamine--glycine ligase (EC 6.3.4.13) compare
Xcc-8004.4024.1 -3.1 -6.3 3-deoxy-D-manno-octulosonic acid kinase (EC 2.7.1.-) compare
Xcc-8004.2219.1 -3.1 -7.4 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.2944.1 -3.1 -9.6 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16) compare
Xcc-8004.4025.1 -3.0 -12.1 ADP-heptose--lipooligosaccharide heptosyltransferase II (EC 2.4.1.-) compare
Xcc-8004.4737.1 -3.0 -6.0 Putative glycerophosphate (or ribitol phosphate) transferase relatede to lipopolysaccharide core biosynthesis compare
Xcc-8004.1871.1 -3.0 -5.2 LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) compare
Xcc-8004.2316.1 -3.0 -10.5 N-acetylornithine carbamoyltransferase (EC 2.1.3.9) compare
Xcc-8004.2977.1 -3.0 -19.3 hypothetical protein compare
Xcc-8004.2421.1 -3.0 -17.0 Polyhydroxyalkanoic acid synthase compare
Xcc-8004.130.1 -2.9 -7.2 hypothetical protein compare
Xcc-8004.3395.1 -2.9 -2.0 Transcriptional regulator, GntR family compare
Xcc-8004.4596.1 -2.9 -10.1 hypothetical protein compare
Xcc-8004.1205.1 -2.9 -3.4 hypothetical protein compare
Xcc-8004.4739.1 -2.9 -5.9 Lipid A core - O-antigen ligase and related enzymes compare
Xcc-8004.2957.1 -2.8 -9.7 Aspartokinase (EC 2.7.2.4) / Homoserine dehydrogenase (EC 1.1.1.3) compare
Xcc-8004.2323.1 -2.8 -5.7 Argininosuccinate lyase (EC 4.3.2.1) compare
Xcc-8004.957.1 -2.8 -5.1 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) compare
Xcc-8004.186.1 -2.8 -10.5 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Xcc-8004.1027.1 -2.8 -1.9 Two-component system sensor protein compare
Xcc-8004.5020.1 -2.8 -4.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Xcc-8004.3361.1 -2.7 -5.5 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Xcc-8004.4529.1 -2.7 -1.9 FIG01210979: hypothetical protein compare
Xcc-8004.601.1 -2.7 -8.1 Phosphoribosylaminoimidazole-succinocarboxamide synthase (EC 6.3.2.6) compare
Xcc-8004.1955.1 -2.7 -4.9 Chorismate synthase (EC 4.2.3.5) compare
Xcc-8004.1010.1 -2.7 -7.3 Aspartate aminotransferase (EC 2.6.1.1) compare
Xcc-8004.1727.1 -2.7 -3.1 Aspartokinase (EC 2.7.2.4) / Diaminopimelate decarboxylase (EC 4.1.1.20) compare
Xcc-8004.1241.1 -2.6 -6.4 Phosphoglycerate kinase (EC 2.7.2.3) compare
Xcc-8004.1059.1 -2.6 -6.3 Acetolactate synthase large subunit (EC 2.2.1.6) compare
Xcc-8004.4398.1 -2.6 -7.5 Serine hydroxymethyltransferase (EC 2.1.2.1) compare
Xcc-8004.44.1 -2.6 -19.4 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Xcc-8004.1873.1 -2.6 -3.2 Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18) compare
Xcc-8004.1616.1 -2.6 -1.1 Shikimate kinase I (EC 2.7.1.71) compare
Xcc-8004.2385.1 -2.6 -11.0 lipopolysaccharide core biosynthesis protein compare
Xcc-8004.2260.1 -2.6 -5.6 Acetoacetyl-CoA reductase (EC 1.1.1.36) compare
Xcc-8004.3049.1 -2.6 -8.9 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Xcc-8004.3346.1 -2.5 -3.7 hypothetical protein compare
Xcc-8004.3362.1 -2.5 -5.5 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Xcc-8004.1437.1 -2.5 -6.0 Kup system potassium uptake protein compare
Xcc-8004.2420.1 -2.5 -6.5 PHA synthase subunit compare
Xcc-8004.1058.1 -2.4 -2.1 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
Xcc-8004.43.1 -2.4 -8.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Xcc-8004.2320.1 -2.4 -4.5 Acetylglutamate kinase (EC 2.7.2.8) compare
Xcc-8004.2086.1 -2.4 -2.0 Xanthan biosynthesis glycosyltransferase GumH compare
Xcc-8004.577.1 -2.4 -6.8 Transcriptional regulator, MarR family compare
Xcc-8004.270.1 -2.4 -7.0 Protein export cytoplasm chaperone protein (SecB, maintains protein to be exported in unfolded state) compare
Xcc-8004.4507.1 -2.4 -6.8 Glycosyltransferase compare
Xcc-8004.1056.1 -2.4 -4.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Xcc-8004.3156.1 -2.4 -5.3 Magnesium and cobalt efflux protein CorC compare
Xcc-8004.1763.1 -2.3 -4.4 Phosphoglycerate mutase (EC 5.4.2.1) compare
Xcc-8004.4170.1 -2.3 -2.4 LSU ribosomal protein L25p compare
Xcc-8004.659.1 -2.3 -2.2 IMP cyclohydrolase (EC 3.5.4.10) / Phosphoribosylaminoimidazolecarboxamide formyltransferase (EC 2.1.2.3) compare
Xcc-8004.2561.1 -2.3 -9.3 FIG01213638: hypothetical protein compare
Xcc-8004.968.1 -2.3 -9.8 Periplasmic thiol:disulfide interchange protein DsbA compare
Xcc-8004.2217.1 -2.3 -4.5 FIG01209779: hypothetical protein compare
Xcc-8004.1057.1 -2.3 -11.1 Threonine dehydratase (EC 4.3.1.19) compare
Xcc-8004.4425.1 -2.3 -5.2 General secretion pathway protein L compare
Xcc-8004.2947.1 -2.3 -8.3 Histidinol-phosphate aminotransferase (EC 2.6.1.9) compare
Xcc-8004.4514.1 -2.2 -13.1 Glycosyltransferase compare
Xcc-8004.4530.1 -2.2 -6.0 Dethiobiotin synthetase (EC 6.3.3.3) compare
Xcc-8004.2384.1 -2.2 -11.0 Heat shock (predicted periplasmic) protein YciM, precursor compare
Xcc-8004.1236.1 -2.2 -7.1 NAD-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.12) compare
Xcc-8004.3303.1 -2.2 -3.7 Methylthioribose-1-phosphate isomerase (EC 5.3.1.23) compare
Xcc-8004.3283.1 -2.2 -6.9 Phosphoserine aminotransferase (EC 2.6.1.52) compare
Xcc-8004.1511.1 -2.2 -2.6 Ribonuclease E (EC 3.1.26.12) compare
Xcc-8004.2948.1 -2.1 -4.8 Histidinol dehydrogenase (EC 1.1.1.23) compare
Xcc-8004.2931.1 -2.1 -4.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Xcc-8004.4503.1 -2.1 -4.9 GDP-mannose 4,6-dehydratase (EC 4.2.1.47) compare
Xcc-8004.3324.1 -2.1 -2.8 Carbonic anhydrase (EC 4.2.1.1) compare
Xcc-8004.127.1 -2.1 -2.4 Fructose-1,6-bisphosphatase, type I (EC 3.1.3.11) compare
Xcc-8004.3363.1 -2.1 -5.3 Phosphate transport ATP-binding protein PstB (TC 3.A.1.7.1) compare
Xcc-8004.2081.1 -2.1 -3.2 Xanthan biosynthesis chain length determinant protein GumC compare
Xcc-8004.401.1 -2.1 -1.6 FMN reductase (EC 1.5.1.29) compare
Xcc-8004.4233.1 -2.1 -3.0 two-component system sensor protein compare
Xcc-8004.2954.1 -2.0 -10.5 Threonine synthase (EC 4.2.3.1) compare
Xcc-8004.3433.1 -2.0 -6.8 Outer membrane lipoprotein SmpA, a component of the essential YaeT outer-membrane protein assembly complex compare
Xcc-8004.402.1 -2.0 -5.1 FIG01209770: hypothetical protein compare
Xcc-8004.4428.1 -2.0 -2.9 General secretion pathway protein I compare
Xcc-8004.252.1 -2.0 -6.9 Nitrogen regulation protein NtrC compare
Xcc-8004.4635.1 -2.0 -2.4 hypothetical protein compare
Xcc-8004.3863.1 -2.0 -4.5 Septum site-determining protein MinD compare
Xcc-8004.1792.1 -2.0 -6.7 Transcription regulator of multidrug efflux pump operon, TetR (AcrR) family compare
Xcc-8004.2579.1 -2.0 -1.9 Transcriptional regulator in PFGI-1-like cluster compare
Xcc-8004.3054.1 -2.0 -2.2 Poly(A) polymerase (EC 2.7.7.19) compare
Xcc-8004.4046.1 -2.0 -9.4 ATP-dependent protease La (EC 3.4.21.53) Type I compare
Xcc-8004.2386.1 -2.0 -9.9 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Xcc-8004.4062.1 -1.9 -9.0 Phosphate regulon transcriptional regulatory protein PhoB (SphR) compare
Xcc-8004.1334.1 -1.9 -1.8 hypothetical protein compare
Xcc-8004.1900.1 -1.9 -3.1 Acyl-CoA thioester hydrolase compare
Xcc-8004.1414.1 -1.9 -1.1 Lactoylglutathione lyase and related lyases compare
Xcc-8004.4283.1 -1.9 -1.5 Diacylglycerol kinase (EC 2.7.1.107) compare
Xcc-8004.1413.1 -1.9 -9.3 Outer membrane receptor proteins, mostly Fe transport compare
Xcc-8004.2168.1 -1.9 -4.6 tRNA-guanine transglycosylase (EC 2.4.2.29) compare
Xcc-8004.4078.1 -1.8 -1.9 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.4890.1 -1.8 -13.2 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.251.1 -1.8 -2.7 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Xcc-8004.3954.1 -1.8 -4.8 HflC protein compare
Xcc-8004.4112.1 -1.8 -3.5 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Xcc-8004.1858.1 -1.8 -1.1 FIG01211170: hypothetical protein compare
Xcc-8004.4225.1 -1.8 -1.5 Regulator of nucleoside diphosphate kinase compare
Xcc-8004.4486.1 -1.8 -11.0 dTDP-glucose 4,6-dehydratase (EC 4.2.1.46) compare
Xcc-8004.689.1 -1.8 -1.1 ATP-dependent DNA helicase recG (EC 3.6.1.-) compare
Xcc-8004.2412.1 -1.8 -8.7 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Xcc-8004.4432.1 -1.7 -5.5 General secretion pathway protein E compare
Xcc-8004.1359.1 -1.7 -5.7 NAD synthetase (EC 6.3.1.5) / Glutamine amidotransferase chain of NAD synthetase compare
Xcc-8004.3360.1 -1.7 -4.7 Phosphate ABC transporter, periplasmic phosphate-binding protein PstS (TC 3.A.1.7.1) compare
Xcc-8004.2327.1 -1.7 -7.1 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Xcc-8004.2743.1 -1.7 -8.7 FIG01210856: hypothetical protein compare
Xcc-8004.1028.1 -1.7 -6.8 Sensor protein PhoQ (EC 2.7.13.3) compare
Xcc-8004.3537.1 -1.7 -5.9 Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4) compare
Xcc-8004.1372.1 -1.7 -3.5 Trehalose-6-phosphate phosphatase (EC 3.1.3.12) compare
Xcc-8004.1436.1 -1.7 -1.5 Holliday junction DNA helicase RuvA compare
Xcc-8004.3752.1 -1.7 -1.7 Isopenicillin N epimerase (EC 5.1.1.17) compare
Xcc-8004.3834.1 -1.7 -4.2 Pathogenicity-related protein compare
Xcc-8004.3976.1 -1.7 -3.8 2-methylaconitate cis-trans isomerase compare
Xcc-8004.3794.1 -1.7 -1.6 Mobile element protein compare
Xcc-8004.4510.1 -1.7 -1.7 ATP binding component of ABC-transporter compare
Xcc-8004.3130.1 -1.6 -6.1 Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77) compare
Xcc-8004.924.1 -1.6 -1.9 FIG01200701: possible membrane protein compare
Xcc-8004.955.1 -1.6 -2.5 Predicted transcriptional regulator of N-Acetylglucosamine utilization, LacI family compare
Xcc-8004.3321.1 -1.6 -1.3 FIG01209847: hypothetical protein compare
Xcc-8004.288.1 -1.6 -1.4 Ferredoxin compare
Xcc-8004.4891.1 -1.6 -6.0 Dolichol-phosphate mannosyltransferase compare
Xcc-8004.623.1 -1.6 -2.5 Phosphoserine phosphatase compare
Xcc-8004.3041.1 -1.6 -3.0 Dna binding response regulator PrrA (RegA) compare
Xcc-8004.4976.1 -1.6 -7.2 hypothetical protein compare
Xcc-8004.3431.1 -1.6 -2.3 DNA repair protein RecN compare
Xcc-8004.3304.1 -1.6 -1.0 FIG01211108: hypothetical protein compare
Xcc-8004.4485.1 -1.5 -5.6 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) compare
Xcc-8004.4431.1 -1.5 -4.0 General secretion pathway protein F compare
Xcc-8004.4430.1 -1.5 -1.6 General secretion pathway protein G compare
Xcc-8004.2495.1 -1.5 -2.2 hypothetical protein compare
Xcc-8004.2110.1 -1.5 -1.2 putative; ORF located using Glimmer/Genemark compare
Xcc-8004.1658.1 -1.5 -4.1 hypothetical protein compare
Xcc-8004.1573.1 -1.5 -7.6 Beta-lactamase (EC 3.5.2.6) compare
Xcc-8004.2314.1 -1.5 -6.1 FIG01209975: hypothetical protein compare
Xcc-8004.337.1 -1.5 -3.1 ATPase, AFG1 family compare
Xcc-8004.3401.1 -1.5 -2.1 FIG01209914: hypothetical protein compare
Xcc-8004.4820.1 -1.5 -1.5 FIG01211334: hypothetical protein compare
Xcc-8004.4424.1 -1.5 -4.7 General secretion pathway protein M compare
Xcc-8004.4200.1 -1.5 -1.7 probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly compare
Xcc-8004.3862.1 -1.5 -4.6 Septum site-determining protein MinC compare
Xcc-8004.1710.1 -1.5 -3.5 Pyrroline-5-carboxylate reductase (EC 1.5.1.2) compare
Xcc-8004.3816.1 -1.5 -6.3 Cytochrome O ubiquinol oxidase subunit I (EC 1.10.3.-) compare
Xcc-8004.1559.1 -1.4 -5.1 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (EC 2.6.1.62) compare
Xcc-8004.2060.1 -1.4 -2.0 Mobile element protein compare
Xcc-8004.1919.1 -1.4 -4.8 FIG056164: rhomboid family serine protease compare
Xcc-8004.2754.1 -1.4 -7.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Xcc-8004.4776.1 -1.4 -1.9 Cell division transporter, ATP-binding protein FtsE (TC 3.A.5.1.1) compare
Xcc-8004.4270.1 -1.4 -5.1 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
Xcc-8004.4403.1 -1.4 -2.2 Arsenate reductase (EC 1.20.4.1) compare
Xcc-8004.4951.1 -1.4 -1.4 FIG01210986: hypothetical protein compare
Xcc-8004.234.1 -1.4 -7.5 cardiolipin synthase compare
Xcc-8004.1222.1 -1.4 -1.4 Glyoxalase family protein compare
Xcc-8004.502.1 -1.4 -2.5 Biotin synthesis protein BioH compare
Xcc-8004.1662.1 -1.4 -6.7 RNA polymerase sigma-54 factor RpoN compare
Xcc-8004.4653.1 -1.4 -8.2 amino acid transporter compare


Specific Phenotypes

For 4 genes in this experiment