Experiment set2IT079 for Burkholderia phytofirmans PsJN

Compare to:

D-Glucosamine Hydrochloride carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS16270 -8.3 -5.7 phosphoglycerate kinase compare
BPHYT_RS02610 -8.1 -5.6 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17680 -7.6 -5.3 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS17670 -6.5 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS09500 -6.1 -9.3 glucose-6-phosphate isomerase compare
BPHYT_RS17685 -5.9 -7.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS18320 -5.8 -15.7 orotate phosphoribosyltransferase compare
BPHYT_RS17400 -5.7 -11.5 anthranilate phosphoribosyltransferase compare
BPHYT_RS13705 -5.7 -6.7 chorismate synthase compare
BPHYT_RS06545 -5.7 -14.6 acetolactate synthase compare
BPHYT_RS15915 -5.6 -15.0 ornithine carbamoyltransferase compare
BPHYT_RS33915 -5.6 -10.6 isopropylmalate isomerase compare
BPHYT_RS17675 -5.6 -3.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS33875 -5.6 -12.4 tryptophan synthase subunit alpha compare
BPHYT_RS15920 -5.5 -14.7 argininosuccinate synthase compare
BPHYT_RS05010 -5.5 -7.5 RpiR family transcriptional regulator compare
BPHYT_RS33835 -5.4 -12.6 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS33880 -5.4 -11.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17855 -5.3 -19.6 glutamate synthase compare
BPHYT_RS03150 -5.3 -15.0 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS17690 -5.3 -15.8 imidazole glycerol phosphate synthase compare
BPHYT_RS14915 -5.2 -8.8 phosphoserine aminotransferase compare
BPHYT_RS09515 -5.2 -5.0 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS33900 -5.1 -15.2 3-isopropylmalate dehydrogenase compare
BPHYT_RS06555 -5.1 -9.4 ketol-acid reductoisomerase compare
BPHYT_RS08955 -5.0 -7.6 homoserine dehydrogenase compare
BPHYT_RS17405 -5.0 -1.8 indole-3-glycerol phosphate synthase compare
BPHYT_RS16835 -4.9 -8.2 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS14855 -4.9 -4.2 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS06405 -4.8 -8.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS16245 -4.8 -7.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS14910 -4.8 -16.0 chorismate mutase compare
BPHYT_RS05225 -4.7 -14.7 phosphoenolpyruvate carboxylase compare
BPHYT_RS01595 -4.7 -12.4 homoserine O-acetyltransferase compare
BPHYT_RS02590 -4.6 -10.9 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS14190 -4.5 -11.0 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16255 -4.5 -3.1 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS17395 -4.4 -3.5 anthranilate synthase subunit II compare
BPHYT_RS17885 -4.4 -7.5 3-dehydroquinate synthase compare
BPHYT_RS06900 -4.3 -11.0 aspartate aminotransferase compare
BPHYT_RS08565 -4.2 -2.1 dihydroorotate dehydrogenase compare
BPHYT_RS06175 -4.2 -8.0 LPS biosynthesis compare
BPHYT_RS17390 -4.2 -15.6 anthranilate synthase subunit I compare
BPHYT_RS33645 -4.2 -8.4 homoserine kinase compare
BPHYT_RS04955 -4.1 -3.6 methionyl-tRNA synthetase compare
BPHYT_RS33840 -4.1 -8.4 amidophosphoribosyltransferase compare
BPHYT_RS12845 -4.1 -15.3 ATPase compare
BPHYT_RS14895 -4.0 -6.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS12985 -4.0 -3.6 amino acid acetyltransferase compare
BPHYT_RS12530 -3.9 -4.0 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS03640 -3.9 -5.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS14845 -3.9 -5.2 cysteine synthase compare
BPHYT_RS17890 -3.9 -3.4 shikimate kinase compare
BPHYT_RS17715 -3.8 -7.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS03725 -3.8 -3.2 serine hydroxymethyltransferase compare
BPHYT_RS16905 -3.7 -4.3 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS16735 -3.6 -6.8 phosphogluconate dehydratase compare
BPHYT_RS02735 -3.6 -8.9 Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) conserved
BPHYT_RS17700 -3.5 -4.0 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS33865 -3.5 -8.2 tryptophan synthase alpha chain compare
BPHYT_RS18705 -3.4 -3.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS08850 -3.3 -3.6 transcriptional regulator compare
BPHYT_RS16675 -3.3 -3.7 dihydroorotase compare
BPHYT_RS04725 -3.2 -10.4 sulfite reductase compare
BPHYT_RS15710 -3.0 -3.3 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS04720 -2.9 -7.9 transcriptional regulator compare
BPHYT_RS33905 -2.6 -1.3 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS06610 -2.6 -1.8 triosephosphate isomerase compare
BPHYT_RS02730 -2.6 -3.3 N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) (from data) compare
BPHYT_RS02725 -2.5 -4.9 GntR family transcriptional regulator compare
BPHYT_RS05610 -2.5 -11.7 DNA-cytosine methyltransferase compare
BPHYT_RS12840 -2.4 -4.5 pyruvate dehydrogenase compare
BPHYT_RS19055 -2.3 -13.4 COF family hydrolase compare
BPHYT_RS08960 -2.3 -2.5 threonine synthase compare
BPHYT_RS03400 -2.3 -1.9 ATP-dependent DNA helicase RecG compare
BPHYT_RS04730 -2.3 -7.2 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS06685 -2.3 -2.8 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS33535 -2.3 -17.0 RNA polymerase sigma factor RpoD compare
BPHYT_RS08245 -2.2 -5.9 anti-sigma factor compare
BPHYT_RS17100 -2.1 -7.6 RNA pyrophosphohydrolase compare
BPHYT_RS25335 -2.1 -1.4 hypothetical protein compare
BPHYT_RS02570 -2.1 -10.1 phosphocarrier protein HPr compare
BPHYT_RS04740 -2.0 -6.0 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS16505 -2.0 -6.0 HAD family hydrolase conserved
BPHYT_RS16840 -2.0 -3.8 transketolase compare
BPHYT_RS05020 -1.9 -3.7 glucose-6-phosphate 1-dehydrogenase compare
BPHYT_RS06045 -1.9 -8.1 transaldolase compare
BPHYT_RS04385 -1.9 -3.6 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS23840 -1.9 -5.4 methyltransferase compare
BPHYT_RS09145 -1.9 -6.9 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS02885 -1.8 -10.4 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS02865 -1.8 -4.2 hypothetical protein compare
BPHYT_RS13220 -1.8 -8.8 phosphomethylpyrimidine synthase compare
BPHYT_RS19680 -1.7 -12.3 glutamate--cysteine ligase compare
BPHYT_RS15795 -1.7 -7.6 hypothetical protein conserved
BPHYT_RS33540 -1.7 -3.8 hypothetical protein compare
BPHYT_RS23650 -1.7 -1.3 hypothetical protein compare
BPHYT_RS14195 -1.7 -2.7 carbamoyl phosphate synthase small subunit compare
BPHYT_RS05650 -1.6 -1.7 hypothetical protein compare
BPHYT_RS32260 -1.6 -2.3 hypothetical protein compare
BPHYT_RS18340 -1.6 -2.2 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS03215 -1.6 -3.3 TetR family transcriptional regulator compare
BPHYT_RS36275 -1.6 -1.9 hypothetical protein compare
BPHYT_RS17265 -1.5 -1.7 cell division protein compare
BPHYT_RS04745 -1.5 -5.6 sulfate adenylyltransferase compare
BPHYT_RS17095 -1.5 -4.5 proline--tRNA ligase compare
BPHYT_RS00815 -1.4 -1.6 hypothetical protein compare
BPHYT_RS03625 -1.3 -6.3 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS14105 -1.3 -9.8 exopolyphosphatase compare
BPHYT_RS06190 -1.3 -3.0 heptosyltransferase compare
BPHYT_RS28350 -1.3 -2.7 fatty acid desaturase compare
BPHYT_RS08765 -1.3 -1.2 ABC transporter ATP-binding protein compare
BPHYT_RS16290 -1.3 -1.4 hypothetical protein compare
BPHYT_RS15810 -1.2 -4.5 citrate synthase compare
BPHYT_RS02560 -1.2 -6.1 glutathione synthetase compare
BPHYT_RS33655 -1.2 -4.4 MarR family transcriptional regulator compare
BPHYT_RS15650 -1.2 -8.7 quinolinate synthetase compare
BPHYT_RS15645 -1.2 -6.6 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS17240 -1.2 -1.4 cell division protein FtsW compare
BPHYT_RS24500 -1.2 -2.1 histidine kinase compare
BPHYT_RS25870 -1.2 -1.2 type III secretion system ATPase compare
BPHYT_RS15780 -1.2 -8.0 ABC transporter ATP-binding protein conserved
BPHYT_RS20155 -1.2 -1.7 hypothetical protein compare
BPHYT_RS15805 -1.2 -5.6 carnitine dehydratase conserved
BPHYT_RS35215 -1.1 -0.9 dehydrogenase compare
BPHYT_RS23230 -1.1 -0.9 histidine kinase compare
BPHYT_RS27175 -1.1 -1.0 DNA-binding protein compare
BPHYT_RS30490 -1.1 -0.9 2-haloalkanoic acid dehalogenase compare
BPHYT_RS09155 -1.1 -4.7 3-ketoacyl-ACP reductase compare
BPHYT_RS08030 -1.1 -3.9 transposase compare
BPHYT_RS15615 -1.1 -3.2 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS17920 -1.1 -1.5 protein CyaY compare
BPHYT_RS16180 -1.0 -0.9 TetR family transcriptional regulator compare
BPHYT_RS04370 -1.0 -1.8 glycosyl transferase compare
BPHYT_RS00980 -1.0 -1.2 GCN5 family acetyltransferase compare
BPHYT_RS03535 -1.0 -3.9 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS03115 -1.0 -5.4 amino acid deaminase compare
BPHYT_RS02860 -1.0 -1.2 membrane protein compare
BPHYT_RS02285 -1.0 -4.5 cell division protein compare
BPHYT_RS09620 -1.0 -2.8 aminodeoxychorismate lyase compare
BPHYT_RS06350 -0.9 -1.7 chemotaxis protein CheY compare
BPHYT_RS17165 -0.9 -2.8 cell division protein ZapD compare
BPHYT_RS14865 -0.9 -3.6 UDP-glucose 6-dehydrogenase compare
BPHYT_RS22360 -0.9 -2.5 response regulator receiver compare
BPHYT_RS02005 -0.9 -2.2 diguanylate phosphodiesterase compare
BPHYT_RS15775 -0.9 -2.8 peptide ABC transporter permease compare
BPHYT_RS06905 -0.9 -6.6 excinuclease ABC subunit B compare
BPHYT_RS12150 -0.9 -6.1 PII uridylyl-transferase compare
BPHYT_RS03110 -0.9 -2.3 MarR family transcriptional regulator compare
BPHYT_RS30085 -0.9 -1.2 hypothetical protein compare
BPHYT_RS09105 -0.9 -3.7 protein-L-isoaspartate O-methyltransferase compare
BPHYT_RS21990 -0.9 -2.9 FAD-dependent oxidoreductase compare
BPHYT_RS15285 -0.9 -2.9 transcription elongation factor GreB compare
BPHYT_RS13390 -0.9 -1.0 IclR family transcriptional regulator compare
BPHYT_RS27920 -0.9 -1.2 tricarballylate utilization protein B compare
BPHYT_RS00055 -0.9 -1.5 hypothetical protein compare
BPHYT_RS05365 -0.9 -1.3 3-ketoacyl-ACP reductase compare
BPHYT_RS23540 -0.9 -1.6 RND transporter compare
BPHYT_RS35310 -0.9 -1.3 GCN5 family N-acetyltransferase compare
BPHYT_RS17050 -0.8 -1.2 hypothetical protein compare
BPHYT_RS35100 -0.8 -2.2 ABC transporter substrate-binding protein compare
BPHYT_RS27155 -0.8 -1.5 peroxiredoxin compare
BPHYT_RS22490 -0.8 -4.6 hypothetical protein compare
BPHYT_RS06530 -0.8 -1.4 membrane protein compare
BPHYT_RS04965 -0.8 -3.9 ATP-binding protein compare
BPHYT_RS23570 -0.8 -4.6 chemotaxis protein CheY compare
BPHYT_RS17380 -0.8 -5.5 ribulose-phosphate 3-epimerase compare
BPHYT_RS04335 -0.8 -1.6 membrane protein compare
BPHYT_RS05800 -0.8 -1.9 hypothetical protein compare
BPHYT_RS09100 -0.8 -2.6 stationary phase survival protein SurE compare
BPHYT_RS02425 -0.8 -2.7 hypothetical protein compare
BPHYT_RS28040 -0.8 -1.9 acyl-CoA dehydrogenase compare
BPHYT_RS09280 -0.8 -0.9 pyridoxal-5'-phosphate-dependent protein subunit beta compare
BPHYT_RS28075 -0.8 -0.9 cytochrome B561 compare
BPHYT_RS11325 -0.8 -4.5 voltage-gated chloride channel protein ClcB compare
BPHYT_RS06890 -0.8 -4.1 3-hydroxybutyrate dehydrogenase compare
BPHYT_RS14880 -0.8 -1.2 integration host factor subunit beta compare
BPHYT_RS36090 -0.8 -1.5 hypothetical protein compare
BPHYT_RS35230 -0.7 -1.3 type 11 methyltransferase compare
BPHYT_RS05515 -0.7 -1.3 hypothetical protein compare
BPHYT_RS22180 -0.7 -1.5 hypothetical protein compare
BPHYT_RS02130 -0.7 -1.3 hydroxymethylglutaryl-CoA lyase compare
BPHYT_RS32200 -0.7 -1.4 lytic transglycosylase compare
BPHYT_RS09355 -0.7 -1.4 LysR family transcriptional regulator compare
BPHYT_RS13200 -0.7 -1.5 molybdopterin binding oxidoreductase compare
BPHYT_RS24630 -0.7 -1.5 (2Fe-2S)-binding protein compare
BPHYT_RS36355 -0.7 -1.4 hypothetical protein compare
BPHYT_RS16975 -0.7 -2.5 shikimate 5-dehydrogenase compare
BPHYT_RS26775 -0.7 -1.3 chemotaxis protein CheB compare
BPHYT_RS07760 -0.7 -0.8 diguanylate phosphodiesterase compare
BPHYT_RS00855 -0.7 -1.5 hypothetical protein compare
BPHYT_RS08730 -0.7 -1.7 hypothetical protein compare
BPHYT_RS30825 -0.7 -1.7 extradiol dioxygenase compare
BPHYT_RS04105 -0.7 -1.5 glyoxalase compare
BPHYT_RS19760 -0.7 -1.9 AraC family transcriptional regulator compare
BPHYT_RS30745 -0.7 -1.8 hypothetical protein compare
BPHYT_RS26880 -0.7 -1.5 ketosteroid isomerase compare
BPHYT_RS16590 -0.7 -3.7 Fis family transcriptional regulator compare
BPHYT_RS01425 -0.7 -2.3 3-phosphoglycerate dehydrogenase compare
BPHYT_RS32155 -0.7 -2.4 type IV secretion system protein VirB11 compare


Specific Phenotypes

For 10 genes in this experiment

For carbon source D-Glucosamine Hydrochloride in Burkholderia phytofirmans PsJN

For carbon source D-Glucosamine Hydrochloride across organisms