Experiment set2IT078 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Proline carbon source

200 most important genes:

  gene name fitness t score description  
AO356_21405 -6.4 -4.4 3-isopropylmalate dehydratase compare
AO356_08635 -6.3 -4.3 ATP phosphoribosyltransferase regulatory subunit compare
AO356_14440 -6.3 -4.3 indole-3-glycerol-phosphate synthase compare
AO356_21440 -5.9 -7.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_12525 -5.9 -5.7 acetylglutamate kinase compare
AO356_14435 -5.8 -4.0 anthranilate phosphoribosyltransferase compare
AO356_13410 -5.6 -8.6 homoserine O-acetyltransferase compare
AO356_18275 -5.4 -11.1 ornithine carbamoyltransferase compare
AO356_09815 -5.4 -5.3 imidazoleglycerol-phosphate dehydratase compare
AO356_09015 -5.3 -15.0 transcriptional regulator compare
AO356_13085 -5.3 -8.9 N-acetylglutamate synthase compare
AO356_09520 -5.3 -3.7 phosphoribosyl-AMP cyclohydrolase compare
AO356_21415 -5.2 -10.8 3-isopropylmalate dehydrogenase compare
AO356_14420 -5.2 -13.0 anthranilate synthase compare
AO356_13405 -5.1 -10.4 methionine biosynthesis protein MetW compare
AO356_22200 -5.1 -7.0 sirohydrochlorin ferrochelatase compare
AO356_09810 -5.1 -3.5 imidazole glycerol phosphate synthase subunit HisH compare
AO356_06965 -5.1 -7.0 histidinol dehydrogenase compare
AO356_10910 -5.1 -8.5 tryptophan synthase subunit alpha compare
AO356_16175 -5.1 -6.0 acetolactate synthase 3 regulatory subunit compare
AO356_18325 -5.0 -13.0 argininosuccinate synthase compare
AO356_19090 -5.0 -3.4 phosphoribosylaminoimidazole synthetase compare
AO356_09525 -5.0 -6.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_14430 -4.9 -10.0 anthranilate synthase compare
AO356_00555 -4.9 -11.9 sulfite reductase compare
AO356_09800 -4.9 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_06970 -4.7 -6.5 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_12945 -4.7 -7.1 CDP-6-deoxy-delta-3,4-glucoseen reductase compare
AO356_21400 -4.6 -7.7 isopropylmalate isomerase compare
AO356_13250 -4.6 -10.6 dihydroxy-acid dehydratase compare
AO356_08735 -4.5 -13.8 phosphoserine phosphatase compare
AO356_16075 -4.5 -3.1 Fis family transcriptional regulator compare
AO356_13605 -4.5 -6.8 5,10-methylenetetrahydrofolate reductase compare
AO356_09425 -4.5 -7.4 malate dehydrogenase compare
AO356_10915 -4.4 -10.1 tryptophan synthase subunit beta compare
AO356_12520 -4.4 -3.0 orotate phosphoribosyltransferase compare
AO356_16180 -4.4 -15.9 ketol-acid reductoisomerase compare
AO356_10300 -4.4 -6.4 3-phosphoglycerate dehydrogenase compare
AO356_16170 -4.3 -10.8 acetolactate synthase 3 catalytic subunit compare
AO356_14295 -4.3 -2.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase compare
AO356_02265 -4.3 -5.0 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_12780 -4.2 -8.5 argininosuccinate lyase compare
AO356_00560 -4.2 -2.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_20830 -4.2 -5.2 phosphoadenosine phosphosulfate reductase compare
AO356_19425 -4.1 -2.7 lipid A biosynthesis lauroyl acyltransferase compare
AO356_21465 -4.1 -4.8 amidophosphoribosyltransferase compare
AO356_06550 -4.0 -10.1 2-isopropylmalate synthase compare
AO356_21470 -4.0 -6.9 O-succinylhomoserine sulfhydrylase compare
AO356_27215 -3.9 -5.1 hypothetical protein compare
AO356_08905 -3.8 -4.5 glycosyl transferase compare
AO356_18025 -3.8 -3.7 ATP-dependent DNA helicase RuvB compare
AO356_10340 -3.8 -13.8 phosphoserine phosphatase compare
AO356_01750 -3.7 -3.5 ATP-dependent Clp protease proteolytic subunit compare
AO356_02175 -3.6 -8.2 transaldolase compare
AO356_21330 -3.6 -8.9 aromatic amino acid aminotransferase compare
AO356_19795 -3.6 -3.4 glycerol-3-phosphate dehydrogenase compare
AO356_09795 -3.4 -2.3 imidazole glycerol phosphate synthase subunit HisF compare
AO356_19045 -3.4 -11.1 chemotaxis protein CheY compare
AO356_08895 -3.4 -2.3 GlcNAc-PI de-N-acetylase compare
AO356_17520 -3.3 -2.2 phosphoribosylformylglycinamidine synthase compare
AO356_11450 -3.1 -3.0 cytochrome C compare
AO356_19900 -3.1 -11.4 lysine transporter LysE compare
AO356_00355 -3.1 -8.0 chemotaxis protein CheY compare
AO356_10445 -3.0 -2.1 serine protease compare
AO356_27210 -3.0 -10.8 hypothetical protein compare
AO356_10000 -3.0 -6.6 hypothetical protein compare
AO356_01745 -3.0 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_11315 -2.9 -2.0 shikimate dehydrogenase compare
AO356_17070 -2.9 -2.8 cytochrome B compare
AO356_16670 -2.9 -12.1 adenylylsulfate kinase compare
AO356_08235 -2.9 -10.3 histidine kinase compare
AO356_09540 -2.9 -2.7 twin-arginine protein translocation system subunit TatC compare
AO356_16665 -2.9 -12.3 sulfate adenylyltransferase compare
AO356_02465 -2.9 -2.7 carbonate dehydratase compare
AO356_19925 -2.9 -11.5 AsnC family transcriptional regulator compare
AO356_06960 -2.8 -8.3 histidinol-phosphate aminotransferase compare
AO356_17075 -2.8 -3.3 cytochrome C compare
AO356_19085 -2.8 -8.9 phosphoribosylglycinamide formyltransferase compare
AO356_16080 -2.8 -14.0 ATPase compare
AO356_07910 -2.7 -3.1 exodeoxyribonuclease V subunit alpha compare
AO356_27205 -2.7 -9.2 hypothetical protein compare
AO356_10005 -2.7 -8.3 branched-chain amino acid permease (azaleucine resistance) compare
AO356_17950 -2.7 -10.2 histidine kinase compare
AO356_07915 -2.6 -3.6 exodeoxyribonuclease V subunit beta compare
AO356_12380 -2.6 -9.0 ATP-dependent DNA helicase RecG compare
AO356_04560 -2.6 -3.0 serine peptidase compare
AO356_15165 -2.6 -3.1 protein cII compare
AO356_27180 -2.5 -4.2 hypothetical protein compare
AO356_18020 -2.5 -4.7 ATP-dependent DNA helicase RuvA compare
AO356_08930 -2.5 -3.8 heptose kinase compare
AO356_22795 -2.4 -5.0 UTP--glucose-1-phosphate uridylyltransferase compare
AO356_17065 -2.4 -2.2 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
AO356_07480 -2.3 -3.4 carbamoyl phosphate synthase large subunit compare
AO356_07195 -2.2 -6.3 GntR family transcriptional regulator compare
AO356_16085 -2.1 -4.9 MFS transporter compare
AO356_27250 -2.1 -5.4 hypothetical protein compare
AO356_01555 -2.1 -8.9 acyl-CoA dehydrogenase compare
AO356_19050 -2.1 -3.4 cysteine synthase compare
AO356_24845 -2.1 -3.8 ATPase compare
AO356_17890 -2.1 -1.9 H-NS histone compare
AO356_11025 -2.0 -5.5 transcriptional regulator PhoU compare
AO356_27230 -2.0 -4.7 hypothetical protein compare
AO356_16185 -2.0 -5.3 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
AO356_21260 -2.0 -2.6 6-carboxy-5,6,7,8-tetrahydropterin synthase compare
AO356_02290 -1.9 -4.1 TetR family transcriptional regulator compare
AO356_02825 -1.9 -10.4 phosphoenolpyruvate synthase conserved
AO356_14135 -1.8 -10.9 biotin synthase compare
AO356_03180 -1.8 -5.2 CysB family transcriptional regulator compare
AO356_12375 -1.7 -9.4 histidine kinase compare
AO356_12990 -1.7 -6.9 5-formyltetrahydrofolate cyclo-ligase compare
AO356_13685 -1.7 -2.5 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_05670 -1.7 -3.3 recombinase RecA compare
AO356_27840 -1.7 -7.4 sodium:proton antiporter compare
AO356_01705 -1.7 -8.0 hypothetical protein compare
AO356_23155 -1.6 -7.6 RpiR family transcriptional regulator compare
AO356_06385 -1.6 -2.6 recombinase XerD compare
AO356_06990 -1.6 -5.1 toluene tolerance protein compare
AO356_05995 -1.6 -3.3 hypothetical protein compare
AO356_08480 -1.6 -8.5 ABC transporter ATP-binding protein conserved
AO356_10140 -1.6 -6.7 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_06005 -1.6 -3.4 zinc metallopeptidase RseP compare
AO356_11610 -1.6 -2.3 glycerol acyltransferase compare
AO356_21410 -1.6 -2.4 SAM-dependent methyltransferase compare
AO356_18805 -1.6 -1.5 magnesium transporter compare
AO356_02800 -1.6 -3.6 transporter compare
AO356_03415 -1.5 -8.3 oxidoreductase compare
AO356_03070 -1.5 -9.4 histidine kinase compare
AO356_08490 -1.5 -11.1 branched-chain amino acid ABC transporter permease conserved
AO356_08640 -1.5 -4.4 membrane protease HflC compare
AO356_03800 -1.5 -2.1 histidine kinase compare
AO356_18730 -1.5 -7.4 arginine N-succinyltransferase compare
AO356_20175 -1.5 -2.2 3-oxoacyl-ACP synthase compare
AO356_08500 -1.5 -10.6 amino acid ABC transporter substrate-binding protein conserved
AO356_08495 -1.4 -9.6 branched-chain amino acid transporter permease subunit LivH conserved
AO356_08485 -1.4 -6.5 ABC transporter ATP-binding protein compare
AO356_07920 -1.4 -5.2 exodeoxyribonuclease V subunit gamma compare
AO356_02580 -1.4 -3.4 GntR family transcriptional regulator compare
AO356_05630 -1.4 -4.4 LysR family transcriptional regulator compare
AO356_12025 -1.4 -8.6 pyruvate carboxylase subunit B compare
AO356_11625 -1.4 -9.1 GABA permease conserved
AO356_20875 -1.4 -6.4 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
AO356_12725 -1.4 -3.4 recombinase XerC compare
AO356_04570 -1.4 -4.9 RNA polymerase subunit sigma compare
AO356_16060 -1.3 -4.1 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
AO356_10330 -1.3 -9.4 threonine dehydratase compare
AO356_10170 -1.3 -2.5 chemotaxis protein CheY compare
AO356_09010 -1.3 -10.1 proline:sodium symporter PutP conserved
AO356_28595 -1.3 -2.5 transcriptional regulator compare
AO356_11585 -1.3 -4.1 lipid A biosynthesis lauroyl acyltransferase compare
AO356_18245 -1.3 -4.6 DeoR family transcriptional regulator compare
AO356_12895 -1.3 -10.6 polyphosphate kinase compare
AO356_02190 -1.2 -5.4 hypothetical protein compare
AO356_19165 -1.2 -2.4 adenosylcobinamide kinase compare
AO356_19420 -1.2 -2.1 septum formation inhibitor compare
AO356_19060 -1.2 -9.2 (p)ppGpp synthetase compare
AO356_03810 -1.2 -3.2 anti-anti-sigma factor compare
AO356_03405 -1.2 -3.7 serine acetyltransferase compare
AO356_02315 -1.2 -3.5 DNA topoisomerase I compare
AO356_10985 -1.2 -4.6 chorismate--pyruvate lyase compare
AO356_21125 -1.2 -4.0 cyclic peptide transporter compare
AO356_07000 -1.2 -1.8 ABC transporter permease compare
AO356_18780 -1.2 -1.7 carbon storage regulator compare
AO356_12730 -1.2 -3.0 hypothetical protein compare
AO356_03620 -1.1 -1.7 cytochrome C compare
AO356_10075 -1.1 -4.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
AO356_12735 -1.1 -2.0 diaminopimelate epimerase compare
AO356_13445 -1.1 -1.3 dihydroorotase compare
AO356_08470 -1.1 -8.1 N-acylglucosamine 2-epimerase compare
AO356_25505 -1.1 -1.8 hypothetical protein compare
AO356_03495 -1.1 -2.4 phosphoglycolate phosphatase compare
AO356_07005 -1.1 -2.1 ABC transporter ATP-binding protein compare
AO356_17080 -1.1 -7.2 stringent starvation protein A compare
AO356_27240 -1.1 -3.1 hypothetical protein compare
AO356_01840 -1.1 -1.7 uracil permease compare
AO356_30345 -1.1 -4.0 IclR family transcriptional regulator compare
AO356_02460 -1.1 -2.0 hypothetical protein compare
AO356_04330 -1.1 -3.5 allophanate hydrolase compare
AO356_03400 -1.0 -4.5 aminotransferase DegT compare
AO356_04335 -1.0 -5.3 hypothetical protein compare
AO356_17985 -1.0 -3.8 cold-shock protein compare
AO356_03500 -1.0 -3.1 3-oxoacyl-ACP reductase compare
AO356_27245 -1.0 -1.1 hypothetical protein compare
AO356_02425 -1.0 -5.8 cytochrome C oxidase Cbb3 compare
AO356_15520 -1.0 -1.9 AsnC family transcriptional regulator compare
AO356_05895 -1.0 -4.8 protein-L-isoaspartate O-methyltransferase compare
AO356_07105 -1.0 -5.6 hypothetical protein compare
AO356_06995 -1.0 -3.8 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_08585 -1.0 -2.5 50S ribosomal protein L9 compare
AO356_13485 -1.0 -1.5 chemotaxis protein CheY compare
AO356_02485 -1.0 -2.7 transcriptional regulator compare
AO356_11340 -1.0 -1.3 NADH-flavin reductase compare
AO356_16070 -1.0 -3.4 poly(A) polymerase compare
AO356_21275 -0.9 -1.8 peptidase compare
AO356_20470 -0.9 -1.8 hypothetical protein compare
AO356_04325 -0.9 -3.2 allophanate hydrolase compare
AO356_19175 -0.9 -2.7 alpha-ribazole phosphatase compare
AO356_07110 -0.9 -3.7 ribonuclease G compare
AO356_02205 -0.9 -2.4 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_16955 -0.9 -4.3 disulfide bond formation protein B compare
AO356_07905 -0.9 -2.2 hypothetical protein compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source L-Proline in Pseudomonas fluorescens FW300-N2C3

For carbon source L-Proline across organisms