Experiment set2IT078 for Pseudomonas fluorescens FW300-N2C3

Compare to:

L-Proline carbon source

200 most detrimental genes:

  gene name fitness t score description  
AO356_00385 +1.1 2.5 peptidylprolyl isomerase compare
AO356_01985 +1.1 3.1 head completion/stabilization protein compare
AO356_23990 +1.0 2.5 amino acid ABC transporter compare
AO356_00130 +0.9 2.7 XRE family transcriptional regulator compare
AO356_03855 +0.8 6.5 AAA family ATPase compare
AO356_28260 +0.8 2.9 transcription factor compare
AO356_14825 +0.7 1.3 AraC family transcriptional regulator compare
AO356_17345 +0.7 2.2 molybdenum cofactor biosynthesis protein MoaE compare
AO356_28430 +0.7 2.6 hypothetical protein compare
AO356_19780 +0.7 5.3 histidine kinase compare
AO356_19835 +0.7 1.8 histidine kinase compare
AO356_08755 +0.7 1.8 aspartyl protease compare
AO356_20630 +0.7 1.8 Presumed portal vertex protein compare
AO356_23150 +0.6 3.5 glutathione S-transferase compare
AO356_11410 +0.6 1.3 hypothetical protein compare
AO356_09185 +0.6 1.3 hypothetical protein compare
AO356_02905 +0.6 4.4 amino acid ABC transporter substrate-binding protein compare
AO356_23050 +0.6 2.8 C4-dicarboxylate ABC transporter compare
AO356_10720 +0.6 5.0 succinate-semialdehyde dehydrogenase compare
AO356_25300 +0.6 2.1 hypothetical protein compare
AO356_25750 +0.6 1.6 GntR family transcriptional regulator compare
AO356_03830 +0.6 3.8 flagellar motor switch protein FliG compare
AO356_08985 +0.6 0.9 hypothetical protein compare
AO356_23645 +0.6 1.3 hypothetical protein compare
AO356_19240 +0.6 1.4 cupin compare
AO356_02005 +0.6 1.3 hypothetical protein compare
AO356_27630 +0.6 2.1 chemotaxis protein CheY compare
AO356_02135 +0.6 2.3 hypothetical protein compare
AO356_22955 +0.6 1.4 ArsR family transcriptional regulator compare
AO356_28440 +0.6 1.2 galactose 1-dehydrogenase compare
AO356_24335 +0.6 1.0 type VI secretion protein compare
AO356_28610 +0.6 0.5 AraC family transcriptional regulator compare
AO356_28130 +0.6 2.4 copper ABC transporter ATP-binding protein compare
AO356_08445 +0.6 1.9 TetR family transcriptional regulator compare
AO356_09560 +0.5 4.5 glucosyltransferase MdoH compare
AO356_10555 +0.5 4.6 hemolysin secretion protein D compare
AO356_24125 +0.5 2.3 hypothetical protein compare
AO356_26895 +0.5 1.5 2Fe-2S ferredoxin compare
AO356_07995 +0.5 2.4 MerR family transcriptional regulator compare
AO356_10570 +0.5 5.1 large adhesive protein compare
AO356_12320 +0.5 3.0 type VI secretion system protein ImpM compare
AO356_27400 +0.5 1.9 1,2-oxophytodienoate reductase compare
AO356_13710 +0.5 2.0 fructose-bisphosphate aldolase compare
AO356_03270 +0.5 1.9 terminase compare
AO356_10560 +0.5 4.4 ABC transporter compare
AO356_15440 +0.5 4.8 histidine kinase compare
AO356_17305 +0.5 2.5 hemolysin D compare
AO356_10505 +0.5 1.5 RND transporter compare
AO356_08890 +0.5 3.8 glycosyltransferase compare
AO356_22595 +0.5 2.9 regulation of enolase 1 compare
AO356_17770 +0.5 1.1 hypothetical protein compare
AO356_16380 +0.5 3.9 hypothetical protein compare
AO356_09940 +0.5 1.3 hypothetical protein compare
AO356_14820 +0.5 1.2 Isochorismatase compare
AO356_26350 +0.5 1.4 acetyl-CoA acetyltransferase compare
AO356_22320 +0.5 1.8 thioesterase compare
AO356_02635 +0.5 1.9 pathogenicity island 1 effector protein compare
AO356_22580 +0.5 2.6 cytochrome C compare
AO356_29750 +0.5 2.8 acetolactate synthase compare
AO356_04935 +0.5 1.1 3-oxoadipate--succinyl-CoA transferase compare
AO356_27105 +0.5 2.2 amino acid transporter compare
AO356_19790 +0.5 4.5 TonB-dependent receptor compare
AO356_26330 +0.5 1.7 Lipid A biosynthesis, N-terminal compare
AO356_01825 +0.5 2.4 hypothetical protein compare
AO356_23175 +0.5 2.1 malonate-semialdehyde dehydrogenase (acetylating) (EC 1.2.1.18) (from data) compare
AO356_00875 +0.5 2.1 MerR family transcriptional regulator compare
AO356_18900 +0.5 2.8 flagellar biosynthesis protein FlgA compare
AO356_27280 +0.5 0.9 XRE family transcriptional regulator compare
AO356_15330 +0.5 2.4 D-alanyl-D-alanine carboxypeptidase compare
AO356_28290 +0.5 1.2 LuxR family transcriptional regulator compare
AO356_03835 +0.5 3.3 flagellar M-ring protein FliF compare
AO356_03730 +0.5 3.6 flagellar biosynthesis sigma factor compare
AO356_16385 +0.5 2.5 transcriptional regulator compare
AO356_18915 +0.5 2.5 flagellar biosynthesis protein FlgB compare
AO356_10580 +0.5 3.2 hypothetical protein compare
AO356_03760 +0.4 2.7 flagellar biosynthetic protein FliR compare
AO356_07625 +0.4 2.0 RNA polymerase subunit sigma compare
AO356_18920 +0.4 3.3 flagellar basal-body rod protein FlgC compare
AO356_17380 +0.4 3.6 amino acid ABC transporter substrate-binding protein compare
AO356_10575 +0.4 1.4 tryptophan synthase subunit beta compare
AO356_09565 +0.4 2.9 glucan biosynthesis protein G compare
AO356_08370 +0.4 1.0 urease subunit gamma compare
AO356_09600 +0.4 1.4 histidine ammonia-lyase compare
AO356_04720 +0.4 2.1 lysine transporter LysE compare
AO356_21085 +0.4 1.8 cupin compare
AO356_25735 +0.4 2.2 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
AO356_04025 +0.4 0.8 hypothetical protein compare
AO356_19600 +0.4 1.6 pyruvate kinase compare
AO356_06360 +0.4 1.4 hypothetical protein compare
AO356_29835 +0.4 0.9 LuxR family transcriptional regulator compare
AO356_12485 +0.4 1.9 DNA-directed RNA polymerase subunit omega compare
AO356_18395 +0.4 1.3 exclusion suppressor FxsA compare
AO356_14975 +0.4 2.4 MFS transporter compare
AO356_29100 +0.4 1.3 epimerase compare
AO356_21705 +0.4 0.9 response regulator compare
AO356_04020 +0.4 1.9 AraC family transcriptional regulator compare
AO356_03825 +0.4 2.2 flagellar assembly protein FliH compare
AO356_15620 +0.4 2.0 (2Fe-2S)-binding protein compare
AO356_10625 +0.4 1.6 peptide ABC transporter substrate-binding protein compare
AO356_10785 +0.4 3.0 poly-beta-1,6-N-acetyl-D-glucosamine biosynthesis protein PgaD compare
AO356_14050 +0.4 0.8 glutathione S-transferase compare
AO356_21430 +0.4 3.1 peptidoglycan-binding protein compare
AO356_22405 +0.4 0.9 hypothetical protein compare
AO356_27565 +0.4 2.2 RND transporter compare
AO356_17545 +0.4 1.4 iron dicitrate transport regulator FecR compare
AO356_09080 +0.4 1.0 thioredoxin compare
AO356_11095 +0.4 3.6 sodium:alanine symporter compare
AO356_22310 +0.4 1.6 hypothetical protein compare
AO356_27885 +0.4 1.8 hypothetical protein compare
AO356_13480 +0.4 0.9 pilus assembly protein PilG compare
AO356_04275 +0.4 0.7 3-oxoacyl-ACP synthase compare
AO356_25705 +0.4 1.7 monooxygenase compare
AO356_20935 +0.4 1.4 antibiotic biosynthesis monooxygenase compare
AO356_04055 +0.4 0.9 hypothetical protein compare
AO356_29990 +0.4 0.8 cupin compare
AO356_18845 +0.4 1.5 hypothetical protein compare
AO356_13655 +0.4 1.9 hypothetical protein compare
AO356_13515 +0.4 1.5 triphosphoribosyl-dephospho-CoA synthase MdcB compare
AO356_18500 +0.4 2.3 hypothetical protein compare
AO356_03205 +0.4 2.9 acetyltransferase compare
AO356_24860 +0.4 2.0 cytochrome C biogenesis protein compare
AO356_18720 +0.4 2.5 AraC family transcriptional regulator compare
AO356_29545 +0.4 2.2 nitrate ABC transporter substrate-binding protein compare
AO356_02700 +0.4 1.2 type III secretion system protein SpaQ compare
AO356_26630 +0.4 0.7 XshC-Cox1 family protein compare
AO356_00175 +0.4 1.4 conjugal transfer protein compare
AO356_17395 +0.4 1.7 glutamine ABC transporter ATP-binding protein compare
AO356_15930 +0.4 2.2 laccase compare
AO356_07075 +0.4 1.5 aspartate ammonia-lyase compare
AO356_09325 +0.4 1.1 type II secretion system protein GspH compare
AO356_03770 +0.4 1.6 flagellar biosynthesis protein flip compare
AO356_18085 +0.4 2.4 thermostable hemolysin compare
AO356_06735 +0.4 1.3 hypothetical protein compare
AO356_18515 +0.4 1.3 pseudouridine synthase compare
AO356_01515 +0.4 1.8 N-formylglutamate amidohydrolase compare
AO356_29180 +0.4 1.9 hydrolase compare
AO356_24985 +0.4 2.0 3-oxoacyl-ACP reductase compare
AO356_03010 +0.4 1.2 glutaredoxin compare
AO356_16155 +0.4 1.6 hypothetical protein compare
AO356_28125 +0.4 0.8 hypothetical protein compare
AO356_26165 +0.4 1.5 LysR family transcriptional regulator compare
AO356_10285 +0.4 1.9 methyltransferase compare
AO356_29190 +0.4 1.2 3-demethylubiquinone-9 3-methyltransferase compare
AO356_03785 +0.4 2.8 flagellar motor switch protein FliM compare
AO356_21475 +0.3 1.5 oxidoreductase compare
AO356_24140 +0.3 1.6 hypothetical protein compare
AO356_02325 +0.3 0.9 3-ketoacyl-CoA thiolase compare
AO356_04855 +0.3 1.5 arabinose transporter permease compare
AO356_11400 +0.3 2.3 glutamate:protein symporter compare
AO356_06900 +0.3 2.9 hypothetical protein compare
AO356_27700 +0.3 1.1 fructokinase compare
AO356_16690 +0.3 1.7 peptidylprolyl isomerase compare
AO356_14130 +0.3 1.1 amidophosphoribosyltransferase compare
AO356_24940 +0.3 1.6 AraC family transcriptional regulator compare
AO356_06760 +0.3 1.3 transcriptional antiterminator compare
AO356_23265 +0.3 1.4 cation:proton antiporter compare
AO356_08150 +0.3 1.8 type VI secretion protein compare
AO356_27065 +0.3 2.6 phosphoglucomutase compare
AO356_01335 +0.3 1.7 paraquat-inducible protein A compare
AO356_26800 +0.3 1.2 aldehyde dehydrogenase compare
AO356_24185 +0.3 1.8 isochorismate-pyruvate lyase compare
AO356_03840 +0.3 2.1 flagellar hook-basal body protein FliE compare
AO356_18925 +0.3 2.4 flagellar biosynthesis protein FlgD compare
AO356_21080 +0.3 1.5 sugar dehydrogenase compare
AO356_18735 +0.3 1.6 arginine N-succinyltransferase compare
AO356_06905 +0.3 2.9 adhesin compare
AO356_26905 +0.3 1.6 AraC family transcriptional regulator compare
AO356_03075 +0.3 1.6 MarR family transcriptional regulator compare
AO356_26540 +0.3 1.4 antibiotic synthesis protein MbtH compare
AO356_29300 +0.3 2.0 ABC transporter substrate-binding protein compare
AO356_04220 +0.3 2.0 hypothetical protein compare
AO356_05035 +0.3 0.7 GNAT family acetyltransferase compare
AO356_26375 +0.3 1.4 hypothetical protein compare
AO356_24400 +0.3 1.5 universal stress protein UspA compare
AO356_01015 +0.3 0.9 peptidylprolyl isomerase compare
AO356_03765 +0.3 1.8 flagellar biosynthetic protein FliQ compare
AO356_27255 +0.3 2.3 transcriptional regulator compare
AO356_20895 +0.3 1.1 manganese ABC transporter ATP-binding protein compare
AO356_21710 +0.3 1.2 RNA polymerase subunit sigma compare
AO356_04160 +0.3 0.7 hypothetical protein compare
AO356_22280 +0.3 1.6 gluconolactonase compare
AO356_05040 +0.3 2.1 transcriptional regulator compare
AO356_03680 +0.3 2.8 chemotaxis protein compare
AO356_07080 +0.3 1.2 FagA protein compare
AO356_15515 +0.3 1.1 DNA polymerase III subunit epsilon compare
AO356_27870 +0.3 1.5 ATPase compare
AO356_12545 +0.3 1.8 hypothetical protein compare
AO356_29795 +0.3 0.8 amino acid transporter compare
AO356_03335 +0.3 1.7 competence protein ComEA compare
AO356_30020 +0.3 1.4 hypothetical protein compare
AO356_05790 +0.3 0.9 hypothetical protein compare
AO356_02965 +0.3 1.7 LuxR family transcriptional regulator compare
AO356_26940 +0.3 1.6 dehydrogenase compare
AO356_28090 +0.3 0.6 ABC transporter ATP-binding protein compare
AO356_06730 +0.3 1.4 hypothetical protein compare
AO356_21215 +0.3 1.4 RNA polymerase subunit sigma-24 compare
AO356_27150 +0.3 1.1 threonine synthase compare
AO356_26110 +0.3 0.6 sarcosine oxidase subunit alpha compare
AO356_29820 +0.3 1.7 phosphohydrolase compare
AO356_23385 +0.3 1.5 short-chain dehydrogenase compare


Specific Phenotypes

For 8 genes in this experiment

For carbon source L-Proline in Pseudomonas fluorescens FW300-N2C3

For carbon source L-Proline across organisms