Experiment set2IT078 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Leucine carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS18305 -6.6 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS05860 -6.5 -4.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS26895 -6.3 -7.5 3-methylcrotonyl-CoA carboxylase compare
RR42_RS06485 -6.2 -6.0 chorismate synthase compare
RR42_RS14365 -6.1 -4.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS33255 -6.0 -3.9 protein-tyrosine phosphatase compare
RR42_RS26900 -5.9 -4.0 enoyl-CoA hydratase compare
RR42_RS12175 -5.7 -9.5 malate synthase compare
RR42_RS19005 -5.6 -5.5 3-dehydroquinate synthase compare
RR42_RS16250 -5.5 -7.5 sulfate adenylyltransferase compare
RR42_RS07425 -5.5 -8.7 IclR family transcriptional regulator compare
RR42_RS30655 -5.5 -6.5 LysR family transcriptional regulator compare
RR42_RS16265 -5.5 -4.3 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS16275 -5.2 -4.5 membrane protein compare
RR42_RS00955 -5.1 -7.0 hydroxymethylglutaryl-CoA lyase compare
RR42_RS14320 -5.1 -6.9 O-succinylhomoserine sulfhydrylase compare
RR42_RS18295 -5.0 -10.8 anthranilate synthase component I compare
RR42_RS18300 -5.0 -6.4 anthranilate synthase subunit II compare
RR42_RS16255 -5.0 -10.6 sulfate adenylyltransferase compare
RR42_RS04475 -5.0 -10.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS07555 -4.9 -3.4 potassium transporter Kup compare
RR42_RS26905 -4.7 -7.2 methylcrotonoyl-CoA carboxylase compare
RR42_RS01160 -4.7 -11.4 homoserine O-acetyltransferase compare
RR42_RS33260 -4.6 -8.8 multidrug MFS transporter compare
RR42_RS01290 -4.4 -7.9 thiamine biosynthesis protein ThiC compare
RR42_RS11795 -4.3 -3.6 PEP synthetase regulatory protein compare
RR42_RS20205 -4.2 -2.9 chromosome partitioning protein compare
RR42_RS33250 -3.9 -8.9 tyrosine protein kinase compare
RR42_RS16245 -3.9 -6.5 uroporphyrin-III methyltransferase compare
RR42_RS16270 -3.9 -10.5 sulfite reductase compare
RR42_RS16280 -3.7 -7.4 transcriptional regulator compare
RR42_RS19010 -3.7 -7.4 shikimate kinase compare
RR42_RS04535 -3.6 -6.3 cysteine synthase compare
RR42_RS33240 -3.5 -16.0 GDP-L-fucose synthase compare
RR42_RS12040 -3.5 -13.9 MFS transporter compare
RR42_RS00875 -3.5 -12.2 isocitrate dehydrogenase compare
RR42_RS30660 -3.4 -7.3 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS12550 -3.4 -4.9 hypothetical protein compare
RR42_RS01385 -3.3 -3.0 5,10-methylenetetrahydrofolate reductase compare
RR42_RS01845 -3.3 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS18855 -3.2 -3.8 preprotein translocase compare
RR42_RS17645 -3.2 -6.8 shikimate dehydrogenase compare
RR42_RS14360 -3.0 -1.7 tryptophan synthase subunit alpha compare
RR42_RS18310 -3.0 -2.6 indole-3-glycerol-phosphate synthase compare
RR42_RS04460 -3.0 -5.3 chorismate mutase compare
RR42_RS13880 -3.0 -14.5 AMP-dependent synthetase compare
RR42_RS33245 -2.8 -8.1 mannose-1-phosphate guanyltransferase compare
RR42_RS02705 -2.8 -3.1 Holliday junction DNA helicase RuvA compare
RR42_RS26915 -2.7 -5.8 AMP-binding protein compare
RR42_RS34245 -2.7 -11.7 branched-chain alpha-ketoacid:ferredoxin oxidoreductase, fused (from data) conserved
RR42_RS12925 -2.7 -3.6 ATPase compare
RR42_RS16240 -2.7 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS33235 -2.6 -7.9 GDP-mannose 4,6-dehydratase compare
RR42_RS24605 -2.6 -7.7 TetR family transcriptional regulator compare
RR42_RS00940 -2.6 -8.3 biotin synthase compare
RR42_RS12185 -2.6 -2.1 LysR family transcriptional regulator compare
RR42_RS18850 -2.6 -2.7 preprotein translocase subunit TatC compare
RR42_RS18815 -2.6 -6.4 cytochrome C compare
RR42_RS06095 -2.4 -5.5 hypothetical protein compare
RR42_RS06555 -2.3 -5.8 3-oxoacid CoA-transferase (EC 2.8.3.5), subunit A (from data) compare
RR42_RS16970 -2.3 -10.8 ABC transporter ATP-binding protein compare
RR42_RS16975 -2.2 -8.2 ABC transporter permease compare
RR42_RS07360 -2.2 -4.3 ATPase compare
RR42_RS16965 -2.2 -5.3 ABC transporter compare
RR42_RS21220 -2.1 -2.3 iron transporter FeoB compare
RR42_RS18820 -2.1 -6.2 cytochrome B compare
RR42_RS22495 -2.1 -5.4 hypothetical protein compare
RR42_RS33210 -2.0 -6.0 teichoic acid biosynthesis protein compare
RR42_RS21820 -2.0 -4.3 GntR family transcriptional regulator compare
RR42_RS16960 -2.0 -7.2 ABC transporter ATP-binding protein compare
RR42_RS16980 -1.9 -13.5 branched-chain amino acid ABC transporter substrate-binding protein compare
RR42_RS33355 -1.9 -4.4 membrane protein compare
RR42_RS19090 -1.9 -2.5 cytochrome C compare
RR42_RS19085 -1.9 -2.3 cytochrome C biogenesis protein ResB compare
RR42_RS11790 -1.9 -9.0 phosphoenolpyruvate synthase compare
RR42_RS03095 -1.8 -2.2 succinyl-CoA synthetase subunit beta compare
RR42_RS18825 -1.8 -2.3 ubiquinol-cytochrome C reductase compare
RR42_RS00115 -1.8 -2.0 hypothetical protein compare
RR42_RS12860 -1.8 -3.0 pseudouridine synthase compare
RR42_RS17050 -1.8 -5.4 phosphoribosylglycinamide formyltransferase compare
RR42_RS18140 -1.8 -2.2 MarR family transcriptional regulator compare
RR42_RS07605 -1.7 -6.2 poly-beta-hydroxybutyrate polymerase compare
RR42_RS04700 -1.7 -1.6 ribonuclease G compare
RR42_RS18930 -1.6 -3.5 BolA family transcriptional regulator compare
RR42_RS02420 -1.6 -1.3 SAM-dependent methyltransferase compare
RR42_RS34680 -1.6 -2.0 short-chain dehydrogenase compare
RR42_RS34255 -1.6 -7.1 aldehyde dehydrogenase compare
RR42_RS04880 -1.6 -8.7 coproporphyrinogen III oxidase compare
RR42_RS21040 -1.6 -1.2 hypothetical protein compare
RR42_RS13800 -1.5 -4.2 formyltetrahydrofolate deformylase compare
RR42_RS31080 -1.5 -2.0 hypothetical protein compare
RR42_RS18485 -1.5 -1.4 glutaredoxin compare
RR42_RS18430 -1.5 -2.8 prevent-host-death protein compare
RR42_RS30640 -1.5 -4.6 DNA mismatch repair protein MutT compare
RR42_RS12015 -1.5 -3.2 dihydrolipoamide acyltransferase compare
RR42_RS20195 -1.5 -1.3 ATPase F0F1 compare
RR42_RS00380 -1.5 -5.6 GntR family transcriptional regulator compare
RR42_RS31285 -1.5 -2.2 XRE family transcriptional regulator compare
RR42_RS17390 -1.5 -5.0 ATP-dependent DNA helicase RecG compare
RR42_RS07565 -1.4 -7.9 transcription accessory protein compare
RR42_RS09555 -1.4 -2.1 universal stress protein UspA compare
RR42_RS08575 -1.4 -1.4 tail protein compare
RR42_RS13180 -1.4 -8.3 3'-5' exonuclease compare
RR42_RS12050 -1.4 -5.3 DNA polymerase compare
RR42_RS23565 -1.4 -1.2 flagellar motor switch protein G compare
RR42_RS13910 -1.4 -4.6 glutamate racemase compare
RR42_RS02045 -1.4 -8.4 GTPase compare
RR42_RS05955 -1.4 -1.4 hypothetical protein compare
RR42_RS07620 -1.3 -2.7 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS01905 -1.3 -3.2 cytochrome C oxidase subunit II compare
RR42_RS17060 -1.3 -9.5 histidine kinase compare
RR42_RS22490 -1.3 -5.3 IclR family transcriptional regulator compare
RR42_RS23730 -1.3 -2.4 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS19065 -1.2 -6.4 transcriptional regulator compare
RR42_RS01915 -1.2 -4.0 cytochrome C oxidase subunit I compare
RR42_RS16260 -1.2 -0.7 phosphoadenosine phosphosulfate reductase compare
RR42_RS00925 -1.2 -4.0 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA compare
RR42_RS21435 -1.2 -3.4 hypothetical protein compare
RR42_RS15035 -1.2 -3.3 ZIP zinc transporter compare
RR42_RS10245 -1.2 -1.8 dehydratase compare
RR42_RS02785 -1.2 -2.3 dimethyladenosine transferase compare
RR42_RS34250 -1.2 -4.2 LysR family transcriptional regulator compare
RR42_RS16525 -1.2 -3.2 anti-sigma factor compare
RR42_RS33850 -1.2 -2.0 hypothetical protein compare
RR42_RS21095 -1.2 -4.4 GntR family transcriptional regulator compare
RR42_RS15890 -1.2 -5.2 heme biosynthesis protein HemY compare
RR42_RS01720 -1.1 -1.5 membrane protein compare
RR42_RS00930 -1.1 -4.9 8-amino-7-oxononanoate synthase compare
RR42_RS05670 -1.1 -1.5 urease subunit beta compare
RR42_RS17930 -1.1 -3.5 RNA pyrophosphohydrolase compare
RR42_RS01380 -1.1 -1.6 membrane protein compare
RR42_RS04895 -1.1 -6.1 serine/threonine protein phosphatase compare
RR42_RS22150 -1.1 -2.4 thiol-disulfide isomerase compare
RR42_RS01775 -1.1 -5.3 glutamate--cysteine ligase compare
RR42_RS02345 -1.1 -2.5 carbon monoxide dehydrogenase compare
RR42_RS33650 -1.1 -3.1 IclR family transcriptional regulator compare
RR42_RS01780 -1.1 -5.8 glutathione synthetase compare
RR42_RS03085 -1.1 -1.0 RecX family transcriptional regulator compare
RR42_RS05500 -1.1 -1.2 preprotein translocase subunit SecG compare
RR42_RS34535 -1.1 -1.1 membrane protein compare
RR42_RS10920 -1.1 -1.7 hypothetical protein compare
RR42_RS31330 -1.1 -1.4 LysR family transcriptional regulator compare
RR42_RS21380 -1.1 -1.6 cupin compare
RR42_RS01885 -1.0 -3.7 cytochrome C oxidase assembly protein compare
RR42_RS02085 -1.0 -5.0 RNA polymerase subunit sigma-54 compare
RR42_RS17490 -1.0 -3.0 NADP transhydrogenase subunit alpha compare
RR42_RS17105 -1.0 -5.7 Clp protease ClpX compare
RR42_RS20440 -1.0 -1.3 histidine kinase compare
RR42_RS00615 -1.0 -4.1 recombinase XerC compare
RR42_RS05980 -1.0 -5.5 TetR family transcriptional regulator compare
RR42_RS20775 -1.0 -1.0 hypothetical protein compare
RR42_RS17685 -1.0 -5.4 alkyl hydroperoxide reductase compare
RR42_RS17720 -1.0 -1.1 sugar kinase compare
RR42_RS13145 -1.0 -1.6 DNA-binding protein compare
RR42_RS00420 -1.0 -4.2 hypothetical protein compare
RR42_RS02440 -1.0 -2.3 membrane protein compare
RR42_RS15015 -1.0 -1.0 exodeoxyribonuclease VII small subunit compare
RR42_RS08340 -1.0 -1.7 phage tail protein compare
RR42_RS35720 -1.0 -2.2 flagellar basal body rod protein FlgC compare
RR42_RS34395 -1.0 -1.5 hypothetical protein compare
RR42_RS31290 -1.0 -1.7 XRE family transcriptional regulator compare
RR42_RS15895 -1.0 -4.2 uroporphyrinogen III methyltransferase compare
RR42_RS15470 -1.0 -1.6 biopolymer transporter ExbD compare
RR42_RS17055 -1.0 -4.3 LuxR family transcriptional regulator compare
RR42_RS22360 -1.0 -1.7 hypothetical protein compare
RR42_RS12875 -0.9 -1.6 transcriptional regulator compare
RR42_RS27080 -0.9 -2.2 hypothetical protein compare
RR42_RS19825 -0.9 -2.8 LysR family transcriptional regulator compare
RR42_RS06875 -0.9 -2.0 hypothetical protein compare
RR42_RS00790 -0.9 -4.8 chemotaxis protein CheY compare
RR42_RS22230 -0.9 -0.9 hypothetical protein compare
RR42_RS28720 -0.9 -1.6 hypothetical protein compare
RR42_RS02310 -0.9 -2.0 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
RR42_RS32775 -0.9 -2.0 hypothetical protein compare
RR42_RS12615 -0.9 -1.9 LexA family transcriptional regulator compare
RR42_RS08425 -0.9 -1.4 hypothetical protein compare
RR42_RS22575 -0.9 -1.6 hypothetical protein compare
RR42_RS26370 -0.9 -1.8 tautomerase compare
RR42_RS27885 -0.9 -1.0 2-keto-4-pentenoate hydratase compare
RR42_RS10310 -0.9 -1.6 NADPH:quinone reductase compare
RR42_RS03345 -0.9 -3.0 recombinase XerD compare
RR42_RS35450 -0.9 -1.6 hypothetical protein compare
RR42_RS23725 -0.9 -4.1 phenylacetate-CoA oxygenase compare
RR42_RS01875 -0.9 -4.4 cytochrome C oxidase subunit II compare
RR42_RS27520 -0.9 -1.6 hypothetical protein compare
RR42_RS14055 -0.8 -2.2 elongation factor 4 compare
RR42_RS31530 -0.8 -2.4 histidine kinase compare
RR42_RS35895 -0.8 -2.4 PadR family transcriptional regulator compare
RR42_RS15475 -0.8 -3.4 protein tolQ compare
RR42_RS13830 -0.8 -1.0 hypothetical protein compare
RR42_RS19445 -0.8 -3.2 TetR family transcriptional regulator compare
RR42_RS07225 -0.8 -1.1 hypothetical protein compare
RR42_RS15740 -0.8 -1.0 hypothetical protein compare
RR42_RS04780 -0.8 -3.0 membrane protein compare
RR42_RS21560 -0.8 -3.1 hypothetical protein compare
RR42_RS03920 -0.8 -1.8 rubredoxin compare
RR42_RS22600 -0.8 -1.0 heavy metal resistance protein CzcE compare
RR42_RS15050 -0.8 -4.7 DNA polymerase I compare
RR42_RS33575 -0.8 -1.8 hypothetical protein compare
RR42_RS01880 -0.8 -3.4 cytochrome oxidase subunit I compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Leucine in Cupriavidus basilensis FW507-4G11

For carbon source L-Leucine across organisms