Experiment set2IT077 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with FW104 filtrate 0.5 X

200 most important genes:

  gene name fitness t score description  
LRK54_RS05350 -7.2 -4.9 manganese efflux pump MntP family protein compare
LRK54_RS17505 -3.7 -3.6 preprotein translocase subunit SecG compare
LRK54_RS08125 -3.7 -8.5 undecaprenyl-diphosphate phosphatase compare
LRK54_RS12860 -3.5 -2.4 RNase adapter RapZ compare
LRK54_RS14825 -3.5 -4.2 protease HtpX compare
LRK54_RS04585 -3.5 -3.4 muramoyltetrapeptide carboxypeptidase compare
LRK54_RS02895 -3.4 -8.9 rhomboid family intramembrane serine protease compare
LRK54_RS04350 -3.4 -3.3 phosphatidylcholine/phosphatidylserine synthase compare
LRK54_RS16660 -3.3 -8.0 VTT domain-containing protein compare
LRK54_RS02445 -3.2 -3.9 membrane protein insertion efficiency factor YidD compare
LRK54_RS10150 -3.2 -2.2 DNA topoisomerase I compare
LRK54_RS12855 -3.2 -6.4 PTS fructose transporter subunit IIA compare
LRK54_RS00440 -3.2 -7.3 high frequency lysogenization protein HflD compare
LRK54_RS16940 -3.1 -3.7 RNA polymerase sigma factor RpoE compare
LRK54_RS04720 -3.1 -6.0 phosphoribosylformylglycinamidine synthase compare
LRK54_RS02440 -3.1 -3.0 RNA polymerase-binding protein DksA compare
LRK54_RS16050 -3.0 -2.7 tetratricopeptide repeat protein compare
LRK54_RS11975 -3.0 -6.7 SLC13 family permease compare
LRK54_RS05980 -2.9 -2.0 ATP-binding protein compare
LRK54_RS05415 -2.9 -7.1 TetR/AcrR family transcriptional regulator compare
LRK54_RS00615 -2.9 -6.9 protease modulator HflC compare
LRK54_RS11170 -2.9 -3.4 NADP-dependent malic enzyme compare
LRK54_RS14590 -2.9 -7.3 N-acetylmuramoyl-L-alanine amidase compare
LRK54_RS03290 -2.8 -2.7 RIP metalloprotease RseP compare
LRK54_RS12945 -2.8 -8.1 phosphoribosylformylglycinamidine cyclo-ligase compare
LRK54_RS03125 -2.8 -1.9 preprotein translocase subunit YajC compare
LRK54_RS02275 -2.8 -5.9 enoyl-CoA hydratase-related protein compare
LRK54_RS01280 -2.8 -1.9 MBL fold metallo-hydrolase compare
LRK54_RS14695 -2.8 -13.0 rhomboid family intramembrane serine protease compare
LRK54_RS06685 -2.8 -13.5 TolC family outer membrane protein compare
LRK54_RS05985 -2.7 -1.9 response regulator transcription factor compare
LRK54_RS00620 -2.7 -9.8 FtsH protease activity modulator HflK compare
LRK54_RS11290 -2.7 -1.9 dihydrolipoyllysine-residue acetyltransferase compare
LRK54_RS00085 -2.7 -1.8 tetratricopeptide repeat protein compare
LRK54_RS13760 -2.7 -9.3 trypsin-like peptidase domain-containing protein compare
LRK54_RS12865 -2.7 -9.4 HPr(Ser) kinase/phosphatase compare
LRK54_RS16755 -2.6 -2.6 SurA N-terminal domain-containing protein compare
LRK54_RS06470 -2.6 -11.4 carboxy terminal-processing peptidase compare
LRK54_RS00675 -2.6 -11.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
LRK54_RS12670 -2.6 -9.2 glycosyltransferase compare
LRK54_RS06885 -2.6 -7.2 rhodanese-like domain-containing protein compare
LRK54_RS05655 -2.5 -3.0 ABC transporter permease compare
LRK54_RS10855 -2.5 -5.1 protein-export chaperone SecB compare
LRK54_RS13830 -2.5 -10.0 SDR family NAD(P)-dependent oxidoreductase compare
LRK54_RS17225 -2.5 -5.2 cytochrome-c oxidase, cbb3-type subunit II compare
LRK54_RS02090 -2.5 -15.8 NAD-glutamate dehydrogenase compare
LRK54_RS00670 -2.5 -5.2 OmpA family protein compare
LRK54_RS00680 -2.4 -11.6 TerC family protein compare
LRK54_RS15025 -2.4 -7.4 phosphate regulon sensor histidine kinase PhoR compare
LRK54_RS05495 -2.4 -6.6 met regulon transcriptional regulator MetJ compare
LRK54_RS11375 -2.4 -8.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
LRK54_RS00695 -2.3 -5.1 methylisocitrate lyase compare
LRK54_RS02535 -2.3 -6.1 50S ribosomal protein L9 compare
LRK54_RS06675 -2.3 -9.3 TetR/AcrR family transcriptional regulator compare
LRK54_RS05785 -2.3 -7.6 type I glyceraldehyde-3-phosphate dehydrogenase compare
LRK54_RS15035 -2.3 -6.6 M48 family metalloprotease compare
LRK54_RS10355 -2.3 -3.5 threonine synthase compare
LRK54_RS03710 -2.3 -9.1 tetratricopeptide repeat protein compare
LRK54_RS17270 -2.3 -4.0 DNA translocase FtsK compare
LRK54_RS05650 -2.3 -5.6 ABC transporter ATP-binding protein compare
LRK54_RS02325 -2.2 -4.0 SDR family oxidoreductase compare
LRK54_RS05735 -2.2 -12.2 maleylacetoacetate isomerase compare
LRK54_RS07215 -2.2 -6.9 cytochrome c4 compare
LRK54_RS10660 -2.2 -1.9 DUF4156 domain-containing protein compare
LRK54_RS12460 -2.1 -2.9 hypothetical protein compare
LRK54_RS15030 -2.1 -10.4 phosphate regulon transcriptional regulator PhoB compare
LRK54_RS16730 -2.1 -1.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
LRK54_RS18050 -2.1 -12.2 lipopolysaccharide assembly protein LapB compare
LRK54_RS03110 -2.1 -9.7 nucleotidyltransferase family protein compare
LRK54_RS08760 -2.1 -4.7 transaldolase compare
LRK54_RS12595 -2.0 -5.3 (2Fe-2S)-binding protein compare
LRK54_RS11175 -2.0 -7.9 pyruvate dehydrogenase (acetyl-transferring), homodimeric type compare
LRK54_RS05550 -2.0 -2.7 FAD-binding protein compare
LRK54_RS06415 -2.0 -1.8 hypothetical protein compare
LRK54_RS17905 -2.0 -3.4 NfuA family Fe-S biogenesis protein compare
LRK54_RS02855 -1.9 -6.3 type I restriction-modification system subunit M compare
LRK54_RS17215 -1.9 -4.9 cytochrome-c oxidase, cbb3-type subunit III compare
LRK54_RS00690 -1.9 -11.0 2-methylcitrate synthase compare
LRK54_RS11570 -1.9 -4.0 indole-3-glycerol phosphate synthase TrpC compare
LRK54_RS01685 -1.8 -11.3 tryptophan synthase subunit beta compare
LRK54_RS06755 -1.7 -13.9 LTA synthase family protein compare
LRK54_RS01680 -1.7 -7.0 tryptophan synthase, alpha subunit (EC 4.2.1.20) (from data) compare
LRK54_RS05740 -1.7 -5.9 phosphoglycerate kinase compare
LRK54_RS02285 -1.7 -11.1 hydroxymethylglutaryl-CoA lyase compare
LRK54_RS12295 -1.6 -4.0 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare
LRK54_RS06785 -1.6 -2.2 protein-disulfide reductase DsbD compare
LRK54_RS11385 -1.6 -4.7 co-chaperone DjlA compare
LRK54_RS03405 -1.6 -7.5 ribonuclease G compare
LRK54_RS00080 -1.6 -8.4 helix-turn-helix domain-containing protein compare
LRK54_RS04820 -1.6 -1.4 GspH/FimT family pseudopilin compare
LRK54_RS11565 -1.6 -4.1 anthranilate phosphoribosyltransferase compare
LRK54_RS04140 -1.6 -5.5 inositol-phosphate phosphatase compare
LRK54_RS07195 -1.5 -1.9 hypothetical protein compare
LRK54_RS05665 -1.5 -4.6 dTDP-glucose 4,6-dehydratase compare
LRK54_RS02495 -1.5 -6.0 50S ribosomal protein L19 compare
LRK54_RS15935 -1.5 -8.3 rRNA pseudouridine synthase compare
LRK54_RS07020 -1.5 -2.2 ABC transporter permease compare
LRK54_RS12590 -1.5 -9.9 molybdopterin-dependent oxidoreductase compare
LRK54_RS12190 -1.5 -6.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
LRK54_RS06495 -1.5 -10.2 septal ring lytic transglycosylase RlpA family protein compare
LRK54_RS05440 -1.5 -8.5 hypothetical protein compare
LRK54_RS03895 -1.4 -9.6 lipopolysaccharide biosynthesis protein compare
LRK54_RS08750 -1.4 -4.0 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) compare
LRK54_RS10065 -1.4 -2.9 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase compare
LRK54_RS08585 -1.4 -12.3 RimK family alpha-L-glutamate ligase compare
LRK54_RS17220 -1.4 -2.4 cbb3-type cytochrome c oxidase subunit 3 compare
LRK54_RS05610 -1.4 -6.7 GtrA family protein compare
LRK54_RS16740 -1.4 -3.2 HU family DNA-binding protein compare
LRK54_RS09805 -1.4 -5.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
LRK54_RS17230 -1.4 -8.7 cytochrome-c oxidase, cbb3-type subunit I compare
LRK54_RS12995 -1.4 -3.0 MGMT family protein compare
LRK54_RS14245 -1.4 -3.1 hypothetical protein compare
LRK54_RS00320 -1.3 -3.5 phosphoglycerate mutase compare
LRK54_RS05200 -1.3 -2.4 hypothetical protein compare
LRK54_RS02380 -1.3 -5.2 argininosuccinate lyase compare
LRK54_RS06475 -1.3 -6.6 lipoyl synthase compare
LRK54_RS02460 -1.3 -7.4 phosphoglycolate phosphatase compare
LRK54_RS16735 -1.3 -9.9 endopeptidase La compare
LRK54_RS05670 -1.3 -5.1 glucose-1-phosphate thymidylyltransferase RfbA compare
LRK54_RS12010 -1.3 -7.0 response regulator transcription factor compare
LRK54_RS14670 -1.3 -2.2 NrsF family protein compare
LRK54_RS05530 -1.3 -5.9 electron transfer flavoprotein-ubiquinone oxidoreductase compare
LRK54_RS14415 -1.3 -7.3 fluoride efflux transporter CrcB compare
LRK54_RS01580 -1.2 -5.7 imidazole glycerol phosphate synthase subunit HisF compare
LRK54_RS09345 -1.2 -1.9 ATP-binding protein compare
LRK54_RS04025 -1.2 -1.3 diacylglycerol kinase compare
LRK54_RS00305 -1.2 -8.2 asparagine synthase B compare
LRK54_RS05540 -1.2 -3.8 glycosyltransferase family 2 protein compare
LRK54_RS17205 -1.2 -4.7 heavy metal translocating P-type ATPase compare
LRK54_RS10185 -1.2 -9.7 RDD family protein compare
LRK54_RS17560 -1.2 -3.4 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS05630 -1.2 -5.4 D-sedoheptulose 7-phosphate isomerase compare
LRK54_RS03675 -1.2 -1.9 redox-regulated ATPase YchF compare
LRK54_RS16865 -1.2 -5.9 protein phosphatase 2C domain-containing protein compare
LRK54_RS16875 -1.2 -9.3 kinase/pyrophosphorylase compare
LRK54_RS11560 -1.2 -2.7 aminodeoxychorismate/anthranilate synthase component II compare
LRK54_RS18055 -1.1 -4.1 glycosyltransferase family 4 protein compare
LRK54_RS16955 -1.1 -7.8 translation elongation factor 4 compare
LRK54_RS10950 -1.1 -7.8 S41 family peptidase compare
LRK54_RS16720 -1.1 -5.3 trigger factor compare
LRK54_RS18060 -1.1 -4.5 polysaccharide biosynthesis protein compare
LRK54_RS12300 -1.1 -3.9 Co2+/Mg2+ efflux protein ApaG compare
LRK54_RS16155 -1.1 -1.6 folate-binding protein compare
LRK54_RS02175 -1.1 -6.4 exodeoxyribonuclease V subunit gamma compare
LRK54_RS00815 -1.1 -4.6 pseudouridine synthase compare
LRK54_RS04710 -1.1 -2.7 glycosyltransferase family 2 protein compare
LRK54_RS05775 -1.1 -6.4 pyruvate kinase compare
LRK54_RS17555 -1.1 -7.4 CusA/CzcA family heavy metal efflux RND transporter compare
LRK54_RS00345 -1.1 -2.5 TraB/GumN family protein compare
LRK54_RS05710 -1.1 -7.8 pyridoxal-phosphate dependent enzyme compare
LRK54_RS16655 -1.1 -1.8 protein-L-isoaspartate(D-aspartate) O-methyltransferase compare
LRK54_RS02070 -1.1 -4.4 acyl-CoA dehydrogenase family protein compare
LRK54_RS16650 -1.0 -4.8 5'/3'-nucleotidase SurE compare
LRK54_RS02335 -1.0 -5.1 FUSC family protein compare
LRK54_RS04630 -1.0 -1.3 energy-dependent translational throttle protein EttA compare
LRK54_RS00805 -1.0 -2.8 segregation/condensation protein A compare
LRK54_RS00775 -1.0 -6.3 translational GTPase TypA compare
LRK54_RS02185 -1.0 -3.0 exodeoxyribonuclease V subunit alpha compare
LRK54_RS16665 -1.0 -6.2 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS05615 -1.0 -7.2 hypothetical protein compare
LRK54_RS01340 -1.0 -7.6 amidophosphoribosyltransferase compare
LRK54_RS16815 -1.0 -2.6 hypothetical protein compare
LRK54_RS02180 -1.0 -5.1 UvrD-helicase domain-containing protein compare
LRK54_RS00405 -1.0 -3.7 FHA domain-containing protein compare
LRK54_RS16615 -1.0 -1.6 phosphopyruvate hydratase compare
LRK54_RS08540 -1.0 -4.1 DUF484 family protein compare
LRK54_RS17025 -1.0 -1.2 cold-shock protein compare
LRK54_RS16110 -1.0 -5.9 polyhydroxyalkanoate synthesis repressor PhaR compare
LRK54_RS00635 -0.9 -1.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
LRK54_RS04625 -0.9 -6.6 serine hydroxymethyltransferase compare
LRK54_RS03105 -0.9 -6.5 phosphotransferase compare
LRK54_RS06610 -0.9 -7.6 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
LRK54_RS06820 -0.9 -1.7 Fis family transcriptional regulator compare
LRK54_RS01585 -0.9 -4.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase compare
LRK54_RS05645 -0.9 -7.3 glycosyltransferase compare
LRK54_RS15200 -0.9 -2.1 AraC family transcriptional regulator compare
LRK54_RS10305 -0.9 -2.6 acetolactate synthase, regulatory subunit (EC 2.2.1.6) (from data) compare
LRK54_RS01285 -0.9 -3.8 3-deoxy-D-manno-octulosonic acid kinase compare
LRK54_RS03200 -0.9 -4.3 integration host factor subunit alpha compare
LRK54_RS16945 -0.9 -2.7 sigma-E factor negative regulatory protein compare
LRK54_RS05535 -0.9 -4.0 glycosyltransferase family 2 protein compare
LRK54_RS16950 -0.9 -7.0 Do family serine endopeptidase compare
LRK54_RS13910 -0.9 -3.3 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA compare
LRK54_RS14460 -0.8 -4.7 septum site-determining protein MinD compare
LRK54_RS00420 -0.8 -6.9 ATP-dependent Clp protease ATP-binding subunit ClpA compare
LRK54_RS04920 -0.8 -4.5 YebC/PmpR family DNA-binding transcriptional regulator compare
LRK54_RS12305 -0.8 -5.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
LRK54_RS12200 -0.8 -4.0 division/cell wall cluster transcriptional repressor MraZ compare
LRK54_RS04895 -0.8 -3.9 tol-pal system-associated acyl-CoA thioesterase compare
LRK54_RS01410 -0.8 -6.6 ABC transporter ATP-binding protein/permease compare
LRK54_RS15165 -0.8 -2.4 enoyl-CoA hydratase-related protein compare
LRK54_RS07085 -0.8 -6.7 heme o synthase compare
LRK54_RS07120 -0.8 -7.2 cytochrome c oxidase subunit I compare
LRK54_RS08025 -0.8 -2.7 NAD(P)-dependent oxidoreductase compare
LRK54_RS15020 -0.8 -6.3 polyphosphate kinase 1 compare
LRK54_RS02550 -0.8 -2.3 iron-sulfur cluster assembly accessory protein compare
LRK54_RS16600 -0.8 -5.2 aminopeptidase P family protein compare
LRK54_RS09000 -0.8 -5.0 HAMP domain-containing histidine kinase compare
LRK54_RS17565 -0.8 -6.0 TolC family protein compare
LRK54_RS15265 -0.8 -5.2 acetyl-CoA C-acyltransferase compare


Specific Phenotypes

For 1 genes in this experiment

For stress FW104 filtrate in Rhodanobacter denitrificans FW104-10B01

For stress FW104 filtrate across organisms