Experiment set2IT077 for Rhodanobacter denitrificans FW104-10B01

Compare to:

R2A with FW104 filtrate 0.5 X

200 most detrimental genes:

  gene name fitness t score description  
LRK54_RS14580 +1.3 2.4 hypothetical protein compare
LRK54_RS06225 +0.8 2.2 hypothetical protein compare
LRK54_RS15765 +0.8 1.8 hypothetical protein compare
LRK54_RS02695 +0.7 2.8 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
LRK54_RS05500 +0.7 2.3 hypothetical protein compare
LRK54_RS02900 +0.7 6.2 C40 family peptidase compare
LRK54_RS05365 +0.6 2.0 MarR family transcriptional regulator compare
LRK54_RS00575 +0.6 1.6 hypothetical protein compare
LRK54_RS11585 +0.6 5.8 cAMP-activated global transcriptional regulator CRP compare
LRK54_RS01955 +0.6 2.6 thymidine phosphorylase family protein compare
LRK54_RS01800 +0.6 2.0 dCTP deaminase compare
LRK54_RS03985 +0.6 4.0 TIGR00266 family protein compare
LRK54_RS02365 +0.6 2.3 ABC transporter ATP-binding protein compare
LRK54_RS14275 +0.6 2.8 twin-arginine translocase TatA/TatE family subunit compare
LRK54_RS05485 +0.6 5.5 serine hydrolase compare
LRK54_RS16575 +0.6 5.5 GGDEF domain-containing phosphodiesterase compare
LRK54_RS12515 +0.6 5.1 hypothetical protein compare
LRK54_RS16285 +0.6 1.9 hypothetical protein compare
LRK54_RS04160 +0.6 3.7 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
LRK54_RS11115 +0.6 5.6 TonB-dependent receptor compare
LRK54_RS08395 +0.6 1.8 hypothetical protein compare
LRK54_RS04965 +0.6 4.2 23S rRNA pseudouridine(1911/1915/1917) synthase RluD compare
LRK54_RS04255 +0.6 4.1 type IV pilus twitching motility protein PilT compare
LRK54_RS01910 +0.5 2.3 hypothetical protein compare
LRK54_RS13505 +0.5 2.7 flagellar assembly protein FliH compare
LRK54_RS09735 +0.5 1.3 hydroxymyristoyl-ACP dehydratase compare
LRK54_RS14845 +0.5 0.8 LysR family transcriptional regulator compare
LRK54_RS02970 +0.5 2.0 HlyD family efflux transporter periplasmic adaptor subunit compare
LRK54_RS17830 +0.5 1.1 mercury resistance system periplasmic binding protein MerP compare
LRK54_RS05810 +0.5 1.3 membrane protein compare
LRK54_RS04100 +0.5 0.7 ATP-binding cassette domain-containing protein compare
LRK54_RS12980 +0.5 3.1 hypothetical protein compare
LRK54_RS13475 +0.5 1.1 flagellar protein FliT compare
LRK54_RS12055 +0.5 1.0 dipeptide epimerase compare
LRK54_RS13540 +0.5 0.7 flagellar biosynthetic protein FliO compare
LRK54_RS14495 +0.5 3.9 ABC transporter permease subunit compare
LRK54_RS00525 +0.5 2.2 hypothetical protein compare
LRK54_RS15635 +0.5 2.6 DUF1656 domain-containing protein compare
LRK54_RS11230 +0.5 0.8 universal stress protein compare
LRK54_RS13500 +0.4 3.3 flagellar motor switch protein FliG compare
LRK54_RS10230 +0.4 2.0 hypothetical protein compare
LRK54_RS16230 +0.4 3.1 imidazolonepropionase compare
LRK54_RS06240 +0.4 1.3 hypothetical protein compare
LRK54_RS04245 +0.4 1.3 BON domain-containing protein compare
LRK54_RS12495 +0.4 2.7 AAA family ATPase compare
LRK54_RS00980 +0.4 3.5 DnaJ domain-containing protein compare
LRK54_RS07130 +0.4 1.8 DUF2244 domain-containing protein compare
LRK54_RS17295 +0.4 2.4 formate hydrogenlyase compare
LRK54_RS02025 +0.4 2.0 VOC family protein compare
LRK54_RS05900 +0.4 2.0 VOC family protein compare
LRK54_RS13495 +0.4 3.3 flagellar M-ring protein FliF compare
LRK54_RS01930 +0.4 1.9 hypothetical protein compare
LRK54_RS13435 +0.4 2.4 flagellar basal body L-ring protein FlgH compare
LRK54_RS06490 +0.4 3.4 D-alanyl-D-alanine carboxypeptidase compare
LRK54_RS10485 +0.4 1.8 type II toxin-antitoxin system RelE/ParE family toxin compare
LRK54_RS05805 +0.4 1.7 thiol peroxidase compare
LRK54_RS17055 +0.4 1.8 DoxX family protein compare
LRK54_RS08230 +0.4 1.5 hypothetical protein compare
LRK54_RS11690 +0.4 1.5 UPF0149 family protein compare
LRK54_RS12525 +0.4 2.7 hypothetical protein compare
LRK54_RS04085 +0.4 2.9 HAMP domain-containing histidine kinase compare
LRK54_RS11700 +0.4 1.3 cytochrome bd-I oxidase subunit CydX compare
LRK54_RS07200 +0.4 2.9 GAF domain-containing protein compare
LRK54_RS08190 +0.4 1.9 hypothetical protein compare
LRK54_RS11120 +0.4 3.6 tetratricopeptide repeat-containing sulfotransferase family protein compare
LRK54_RS10505 +0.4 2.8 hypothetical protein compare
LRK54_RS04990 +0.4 3.5 HAMP domain-containing histidine kinase compare
LRK54_RS12850 +0.4 1.7 HPr family phosphocarrier protein compare
LRK54_RS12520 +0.4 2.7 hypothetical protein compare
LRK54_RS07230 +0.4 2.9 endonuclease/exonuclease/phosphatase family protein compare
LRK54_RS11860 +0.4 2.5 MoxR family ATPase compare
LRK54_RS09105 +0.4 1.8 energy transducer TonB compare
LRK54_RS12985 +0.4 2.4 inorganic phosphate transporter compare
LRK54_RS14490 +0.4 1.0 ABC transporter ATP-binding protein compare
LRK54_RS01295 +0.4 0.6 DUF6165 family protein compare
LRK54_RS13485 +0.4 3.2 sigma-54-dependent Fis family transcriptional regulator compare
LRK54_RS12530 +0.4 2.8 hypothetical protein compare
LRK54_RS09215 +0.4 3.4 peptidoglycan DD-metalloendopeptidase family protein compare
LRK54_RS13430 +0.4 2.5 flagellar basal-body rod protein FlgG compare
LRK54_RS01035 +0.4 3.3 tRNA pseudouridine(55) synthase TruB compare
LRK54_RS03860 +0.4 2.1 nitroreductase compare
LRK54_RS11810 +0.4 1.5 nucleoside hydrolase compare
LRK54_RS13565 +0.4 3.1 flagellar biosynthesis protein FlhA compare
LRK54_RS14500 +0.4 3.3 GldG family protein compare
LRK54_RS15015 +0.4 2.2 Ppx/GppA family phosphatase compare
LRK54_RS03035 +0.4 2.6 aminotransferase class III-fold pyridoxal phosphate-dependent enzyme compare
LRK54_RS17035 +0.4 1.5 copper homeostasis protein CutC compare
LRK54_RS11885 +0.4 3.1 BatD family protein compare
LRK54_RS04395 +0.4 2.9 sigma-54 dependent transcriptional regulator compare
LRK54_RS05020 +0.4 3.0 sigma-54 dependent transcriptional regulator compare
LRK54_RS11880 +0.4 3.1 VWA domain-containing protein compare
LRK54_RS05695 +0.4 1.4 host attachment protein compare
LRK54_RS08550 +0.4 1.0 lipoprotein compare
LRK54_RS12500 +0.4 2.2 DUF58 domain-containing protein compare
LRK54_RS10280 +0.4 1.4 PspC domain-containing protein compare
LRK54_RS09615 +0.3 1.5 MerR family transcriptional regulator compare
LRK54_RS16255 +0.3 0.6 efflux RND transporter periplasmic adaptor subunit compare
LRK54_RS05945 +0.3 1.2 hypothetical protein compare
LRK54_RS15565 +0.3 1.5 glutathione S-transferase family protein compare
LRK54_RS13545 +0.3 2.0 flagellar type III secretion system pore protein FliP compare
LRK54_RS07560 +0.3 1.7 CsbD family protein compare
LRK54_RS17180 +0.3 2.5 aldehyde dehydrogenase family protein compare
LRK54_RS12535 +0.3 2.0 hypothetical protein compare
LRK54_RS05055 +0.3 3.1 L-fucose:H+ symporter permease compare
LRK54_RS07190 +0.3 2.9 GAF domain-containing protein compare
LRK54_RS10495 +0.3 3.0 type I restriction endonuclease subunit R compare
LRK54_RS04285 +0.3 2.5 kinase compare
LRK54_RS06155 +0.3 0.4 cysteine dioxygenase compare
LRK54_RS16260 +0.3 2.5 DoxX family protein compare
LRK54_RS17195 +0.3 2.9 acetyl-CoA hydrolase compare
LRK54_RS11180 +0.3 2.4 MFS transporter compare
LRK54_RS08680 +0.3 2.6 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
LRK54_RS00715 +0.3 3.0 propionate--CoA ligase compare
LRK54_RS00835 +0.3 1.8 LysR substrate-binding domain-containing protein compare
LRK54_RS13625 +0.3 0.9 flagellar hook-length control protein FliK compare
LRK54_RS07185 +0.3 2.1 hypothetical protein compare
LRK54_RS14595 +0.3 1.8 alpha/beta hydrolase compare
LRK54_RS10525 +0.3 2.0 glutathione S-transferase family protein compare
LRK54_RS13405 +0.3 1.3 flagellar basal body rod protein FlgB compare
LRK54_RS02410 +0.3 1.6 FMN-binding negative transcriptional regulator compare
LRK54_RS15500 +0.3 0.8 hypothetical protein compare
LRK54_RS01560 +0.3 1.3 carboxymuconolactone decarboxylase family protein compare
LRK54_RS04165 +0.3 1.0 chemotaxis protein CheW compare
LRK54_RS02710 +0.3 0.6 pentapeptide MXKDX repeat protein compare
LRK54_RS07805 +0.3 2.5 insulinase family protein compare
LRK54_RS11750 +0.3 0.8 YicC family protein compare
LRK54_RS06280 +0.3 0.4 alpha/beta hydrolase compare
LRK54_RS02955 +0.3 0.7 efflux transporter outer membrane subunit compare
LRK54_RS04940 +0.3 0.9 zinc ribbon domain-containing protein compare
LRK54_RS01775 +0.3 1.6 DUF3025 domain-containing protein compare
LRK54_RS03325 +0.3 2.5 hypothetical protein compare
LRK54_RS15175 +0.3 1.6 DUF1289 domain-containing protein compare
LRK54_RS10530 +0.3 2.8 S9 family peptidase compare
LRK54_RS13415 +0.3 2.0 flagellar hook capping protein compare
LRK54_RS03015 +0.3 2.4 beta-ketoacyl-[acyl-carrier-protein] synthase family protein compare
LRK54_RS16265 +0.3 1.3 multidrug resistance efflux transporter family protein compare
LRK54_RS17365 +0.3 1.8 hypothetical protein compare
LRK54_RS13425 +0.3 1.0 flagellar basal-body rod protein FlgF compare
LRK54_RS00915 +0.3 2.1 LysR substrate-binding domain-containing protein compare
LRK54_RS11195 +0.3 2.1 arginine deiminase-related protein compare
LRK54_RS07800 +0.3 2.6 insulinase family protein compare
LRK54_RS07255 +0.3 2.5 sulfotransferase compare
LRK54_RS04790 +0.3 1.4 adenine phosphoribosyltransferase compare
LRK54_RS10520 +0.3 2.2 LysR family transcriptional regulator compare
LRK54_RS13805 +0.3 1.6 hypothetical protein compare
LRK54_RS07155 +0.3 2.4 ankyrin repeat domain-containing protein compare
LRK54_RS07225 +0.3 2.6 thiol:disulfide interchange protein DsbA/DsbL compare
LRK54_RS12440 +0.3 2.2 RNB domain-containing ribonuclease compare
LRK54_RS05110 +0.3 0.4 glycosyltransferase family 4 protein compare
LRK54_RS07205 +0.3 1.9 hypothetical protein compare
LRK54_RS14525 +0.3 1.2 hypothetical protein compare
LRK54_RS15555 +0.3 0.5 YciI family protein compare
LRK54_RS12470 +0.3 2.1 RDD family protein compare
LRK54_RS17170 +0.3 2.4 hypothetical protein compare
LRK54_RS12510 +0.3 1.9 elongation factor G compare
LRK54_RS06150 +0.3 1.3 TonB family protein compare
LRK54_RS12490 +0.3 2.1 hypothetical protein compare
LRK54_RS15880 +0.3 1.9 HDOD domain-containing protein compare
LRK54_RS02665 +0.3 1.8 YkgJ family cysteine cluster protein compare
LRK54_RS14800 +0.3 0.5 cytochrome c compare
LRK54_RS17245 +0.3 2.1 HD domain-containing protein compare
LRK54_RS11255 +0.3 1.4 DUF2383 domain-containing protein compare
LRK54_RS17175 +0.3 2.2 YdcF family protein compare
LRK54_RS11870 +0.3 2.0 DUF4381 domain-containing protein compare
LRK54_RS10365 +0.3 1.7 homoserine dehydrogenase compare
LRK54_RS11150 +0.3 1.8 SGNH/GDSL hydrolase family protein compare
LRK54_RS17150 +0.3 2.1 EamA family transporter compare
LRK54_RS13515 +0.3 0.8 flagellar export protein FliJ compare
LRK54_RS05130 +0.3 1.9 amidohydrolase family protein compare
LRK54_RS17400 +0.3 0.6 hypothetical protein compare
LRK54_RS16355 +0.3 1.6 hypothetical protein compare
LRK54_RS11865 +0.3 1.6 DUF58 domain-containing protein compare
LRK54_RS07250 +0.3 2.1 complex I NDUFA9 subunit family protein compare
LRK54_RS11190 +0.3 2.0 glutathione S-transferase compare
LRK54_RS16480 +0.3 1.2 NAD-dependent protein deacetylase compare
LRK54_RS07750 +0.3 1.1 DUF302 domain-containing protein compare
LRK54_RS16360 +0.2 0.3 NAD(+)--rifampin ADP-ribosyltransferase compare
LRK54_RS12920 +0.2 1.3 hypothetical protein compare
LRK54_RS07125 +0.2 2.1 cytochrome c oxidase subunit II compare
LRK54_RS17250 +0.2 1.9 leucyl/phenylalanyl-tRNA--protein transferase compare
LRK54_RS02700 +0.2 1.1 ribosome silencing factor compare
LRK54_RS07260 +0.2 1.3 tetratricopeptide repeat protein compare
LRK54_RS09985 +0.2 1.5 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
LRK54_RS15215 +0.2 1.2 DUF2059 domain-containing protein compare
LRK54_RS02390 +0.2 1.7 acetylglutamate kinase compare
LRK54_RS17185 +0.2 2.0 exodeoxyribonuclease VII large subunit compare
LRK54_RS07145 +0.2 2.3 OmpP1/FadL family transporter compare
LRK54_RS02750 +0.2 1.0 hypothetical protein compare
LRK54_RS01705 +0.2 2.2 fimbrial protein FimV compare
LRK54_RS10405 +0.2 0.9 hypothetical protein compare
LRK54_RS18070 +0.2 2.2 FAD-binding oxidoreductase compare
LRK54_RS08555 +0.2 1.4 hypothetical protein compare
LRK54_RS16810 +0.2 0.5 hypothetical protein compare
LRK54_RS09920 +0.2 2.0 aldo/keto reductase compare
LRK54_RS17165 +0.2 2.1 glycosyltransferase compare
LRK54_RS16315 +0.2 1.8 PAS domain-containing sensor histidine kinase compare
LRK54_RS13510 +0.2 1.5 flagellar protein export ATPase FliI compare
LRK54_RS01420 +0.2 1.7 helix-turn-helix domain-containing protein compare
LRK54_RS14000 +0.2 1.0 nitrate reductase molybdenum cofactor assembly chaperone compare
LRK54_RS16250 +0.2 2.0 FtsX-like permease family protein compare


Specific Phenotypes

For 1 genes in this experiment

For stress FW104 filtrate in Rhodanobacter denitrificans FW104-10B01

For stress FW104 filtrate across organisms