Experiment set2IT077 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic, grinding recovery; Green bean

200 most important genes:

  gene name fitness t score description  
Psyr_4581 -5.8 -2.6 anthranilate synthase, component II compare
Psyr_4940 -5.5 -2.8 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_4270 -5.2 -3.6 serine hydroxymethyltransferase compare
Psyr_1198 -5.0 -2.8 type III secretion protein HrpF compare
Psyr_1983 -5.0 -3.4 3-isopropylmalate dehydratase, large subunit compare
Psyr_4609 -4.9 -8.9 anthranilate synthase, component I compare
Psyr_1669 -4.8 -5.7 O-succinylhomoserine sulfhydrylase compare
Psyr_1217 -4.8 -3.3 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_0473 -4.6 -6.3 Methionine biosynthesis MetW compare
Psyr_4582 -4.5 -1.2 hypothetical protein compare
Psyr_4369 -4.5 -5.3 glutamate-5-semialdehyde dehydrogenase compare
Psyr_0014 -4.5 -3.1 lipid A biosynthesis acyltransferase compare
Psyr_3597 -4.5 -1.1 ABC transporter compare
Psyr_0907 -4.4 -2.9 conserved hypothetical protein compare
Psyr_4897 -4.4 -4.4 imidazoleglycerol-phosphate dehydratase compare
Psyr_4893 -4.3 -1.6 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1614 -4.2 -2.9 lipid A biosynthesis acyltransferase compare
Psyr_0529 -4.2 -4.1 Glycosyl transferase, group 1 compare
Psyr_0474 -4.1 -10.7 homoserine O-acetyltransferase compare
Psyr_4407 -4.1 -2.8 phosphoribosylamine--glycine ligase compare
Psyr_1613 -4.0 -2.7 septum site-determining protein MinC compare
Psyr_0385 -3.9 -4.7 phosphoribosyl-ATP pyrophosphatase compare
Psyr_0469 -3.9 -10.6 dihydroxyacid dehydratase compare
Psyr_1985 -3.9 -9.1 3-isopropylmalate dehydrogenase compare
Psyr_0034 -3.9 -3.8 tryptophan synthase, beta chain compare
Psyr_4262 -3.9 -1.4 lipoprotein, putative compare
Psyr_3701 -3.8 -2.6 thioredoxin, putative compare
Psyr_4580 -3.7 -3.7 anthranilate phosphoribosyltransferase compare
Psyr_0531 -3.7 -2.3 LmbE-like protein compare
Psyr_0847 -3.7 -8.4 acetolactate synthase, small subunit compare
Psyr_1668 -3.6 -7.2 amidophosphoribosyltransferase compare
Psyr_1419 -3.6 -2.5 preQ(0) biosynthesis protein QueC compare
Psyr_0033 -3.6 -4.8 tryptophan synthase, alpha chain compare
Psyr_3290 -3.4 -3.9 3-hydroxyacyl-CoA dehydrogenase / short chain enoyl-CoA hydratase compare
Psyr_4683 -3.4 -2.3 dethiobiotin synthase compare
Psyr_0378 -3.4 -8.6 Glycosyl transferase, family 2 compare
Psyr_4015 -3.4 -2.2 conserved domain protein compare
Psyr_4687 -3.3 -2.3 biotin synthase compare
Psyr_3135 -3.3 -2.2 transcriptional regulator, GntR family compare
Psyr_0219 -3.3 -10.5 phosphomannomutase compare
Psyr_4991 -3.3 -2.2 hypothetical protein compare
Psyr_0377 -3.3 -8.6 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_1663 -3.2 -3.7 phosphoribosylanthranilate isomerase compare
Psyr_0915 -3.2 -9.9 NAD-dependent epimerase/dehydratase compare
Psyr_4362 -3.2 -2.2 Rare lipoprotein A compare
Psyr_0846 -3.2 -10.8 acetolactate synthase, large subunit compare
Psyr_1196 -3.2 -2.5 type III secretion protein HrpD compare
Psyr_0826 -3.1 -5.2 glucose-6-phosphate isomerase compare
Psyr_3008 -3.1 -6.3 Undecaprenyl-diphosphatase compare
Psyr_4133 -3.1 -9.8 histidinol dehydrogenase compare
Psyr_4686 -3.1 -5.1 8-amino-7-oxononanoate synthase compare
Psyr_3179 -3.1 -3.6 DNA translocase FtsK compare
Psyr_2980 -3.1 -3.0 UDP-glucose pyrophosphorylase compare
Psyr_4852 -3.1 -6.6 D-3-phosphoglycerate dehydrogenase compare
Psyr_3640 -3.1 -3.2 conserved hypothetical protein compare
Psyr_1269 -3.0 -4.1 phosphoribosylformylglycinamidine synthase compare
Psyr_4144 -3.0 -1.0 Protein of unknown function DUF1239 compare
Psyr_0848 -3.0 -8.3 ketol-acid reductoisomerase compare
Psyr_5067 -2.9 -5.9 conserved hypothetical protein compare
Psyr_3958 -2.9 -9.3 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_4408 -2.9 -8.8 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3193 -2.9 -1.9 Transcription factor jumonji, jmjC compare
Psyr_3084 -2.8 -2.4 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_1222 -2.8 -2.3 CDS compare
Psyr_3637 -2.7 -10.3 Glycosyl transferase, family 4 compare
Psyr_4134 -2.7 -8.6 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_1748 -2.7 -6.1 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_4140 -2.6 -2.3 Protein of unknown function DUF140 compare
Psyr_0550 -2.6 -3.5 Protein of unknown function UPF0227 compare
Psyr_1984 -2.6 -3.1 3-isopropylmalate dehydratase, small subunit compare
Psyr_0259 -2.6 -3.4 Osmolarity sensor protein envZ compare
Psyr_0920 -2.6 -15.3 Glycosyl transferase, group 1 compare
Psyr_1401 -2.5 -6.6 Histidine triad (HIT) protein compare
Psyr_2039 -2.5 -1.9 Fimbrial protein compare
Psyr_0704 -2.5 -5.2 glutamate 5-kinase compare
Psyr_1056 -2.5 -3.2 Poly(beta-D-mannuronate) lyase compare
Psyr_0576 -2.5 -2.3 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_1193 -2.5 -2.0 type III helper protein HrpZ1 compare
Psyr_3552 -2.5 -2.6 Divalent cation transporter compare
Psyr_2396 -2.5 -2.1 Tartrate dehydrogenase compare
Psyr_4416 -2.4 -3.0 precorrin-8X methylmutase compare
Psyr_2752 -2.4 -2.1 conserved hypothetical protein compare
Psyr_3174 -2.4 -4.0 uroporphyrinogen-III C-methyltransferase / precorrin-2 dehydrogenase compare
Psyr_4130 -2.4 -8.6 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_0917 -2.3 -4.5 ABC-2 compare
Psyr_0557 -2.3 -4.8 phosphoserine phosphatase compare
Psyr_2613 -2.3 -5.0 Cyclic peptide transporter compare
Psyr_2557 -2.3 -2.3 Phosphoenolpyruvate synthase/pyruvate phosphate dikinase-like protein compare
Psyr_3020 -2.3 -1.4 precorrin-4 C11-methyltransferase compare
Psyr_3837 -2.3 -2.2 conserved hypothetical protein compare
Psyr_0914 -2.3 -7.9 Glycosyl transferase, group 1 compare
Psyr_2833 -2.2 -2.0 CDS compare
Psyr_0528 -2.2 -2.6 Carbamoyltransferase compare
Psyr_3146 -2.2 -2.4 general secretion pathway protein J, putative compare
Psyr_3675 -2.2 -2.8 adenosylcobinamide kinase compare
Psyr_3889 -2.2 -2.4 conserved hypothetical protein compare
Psyr_3199 -2.2 -2.9 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4684 -2.2 -2.3 biotin synthesis protein BioC compare
Psyr_3007 -2.2 -1.5 Protein of unknown function DUF1294 compare
Psyr_4942 -2.1 -3.9 HAD-superfamily hydrolase, subfamily IA, variant 3 compare
Psyr_4341 -2.1 -5.0 thiamine-phosphate diphosphorylase compare
Psyr_0919 -2.1 -9.0 Chromosome segregation ATPase-like protein compare
Psyr_2520 -2.1 -1.5 SOS-response transcriptional repressor, LexA compare
Psyr_3525 -2.1 -2.6 3-hydroxyisobutyrate dehydrogenase compare
Psyr_1212 -2.1 -1.7 type III secretion protein HrpO compare
Psyr_1009 -2.0 -2.8 Peptidylprolyl isomerase, FKBP-type compare
Psyr_1275 -2.0 -3.5 Protein of unknown function DUF1289 compare
Psyr_1689 -2.0 -3.3 conserved hypothetical protein compare
Psyr_2188 -2.0 -2.8 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer:CHASE3 compare
Psyr_3152 -2.0 -1.3 hypothetical protein compare
Psyr_1418 -2.0 -3.2 Radical SAM compare
Psyr_2332 -2.0 -3.0 conserved hypothetical protein compare
Psyr_1588 -2.0 -3.2 Putative exonuclease, RdgC compare
Psyr_3698 -2.0 -3.6 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal:Hpt compare
Psyr_4896 -2.0 -3.7 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_1208 -1.9 -8.1 type III secretion protein HrcR compare
Psyr_4566 -1.9 -7.5 Peptidase M23B compare
Psyr_4285 -1.9 -2.3 Ferredoxin:[2Fe-2S]-binding protein compare
Psyr_1257 -1.9 -6.1 2-isopropylmalate synthase compare
Psyr_0025 -1.9 -2.5 shikimate dehydrogenase compare
Psyr_4480 -1.9 -1.5 outer membrane transport energization protein TonB compare
Psyr_4340 -1.9 -6.3 phosphomethylpyrimidine kinase, putative compare
Psyr_1596 -1.9 -1.8 Helix-turn-helix motif protein compare
Psyr_2227 -1.9 -1.9 conserved hypothetical protein compare
Psyr_0575 -1.9 -2.8 protease FtsH subunit HflC compare
Psyr_1213 -1.9 -4.5 type III secretion cytoplasmic ATPase HrcN compare
Psyr_3844 -1.9 -2.9 conserved hypothetical protein compare
Psyr_3636 -1.9 -7.5 Polysaccharide biosynthesis protein CapD compare
Psyr_3023 -1.9 -2.2 conserved hypothetical protein compare
Psyr_1542 -1.9 -5.8 quinolinate synthetase compare
Psyr_1373 -1.9 -1.3 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_1350 -1.8 -2.2 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_0167 -1.8 -1.8 hypothetical protein compare
Psyr_5132 -1.8 -2.4 Glucose-inhibited division protein A subfamily compare
Psyr_3162 -1.8 -1.4 Metalloprotease inhibitor/calysin compare
Psyr_3690 -1.8 -2.9 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_0918 -1.8 -8.0 ABC transporter compare
Psyr_0532 -1.8 -3.7 conserved hypothetical protein compare
Psyr_1205 -1.7 -5.1 type III secretion protein HrcU compare
Psyr_4884 -1.7 -4.4 Rhodanese-like protein compare
Psyr_4894 -1.7 -3.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_2107 -1.7 -2.4 Ribosome modulation factor compare
Psyr_2562 -1.7 -1.7 hypothetical protein compare
Psyr_4069 -1.7 -5.7 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_2927 -1.7 -1.5 transcriptional regulator, TetR family compare
Psyr_1200 -1.7 -7.7 outer-membrane type III secretion protein HrcC compare
Psyr_4143 -1.7 -1.4 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_1832 -1.7 -1.6 Exonuclease compare
Psyr_4132 -1.7 -4.3 histidinol phosphate aminotransferase apoenzyme compare
Psyr_2962 -1.7 -3.6 amino acid ABC transporter substrate-binding protein, PAAT family compare
Psyr_2474 -1.7 -2.5 Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region compare
Psyr_4091 -1.7 -3.5 8-oxo-dGTPase compare
Psyr_3093 -1.7 -2.2 conserved hypothetical protein compare
Psyr_2694 -1.7 -1.8 conserved hypothetical protein compare
Psyr_0533 -1.7 -3.2 conserved hypothetical protein compare
Psyr_1211 -1.7 -2.9 type III secretion protein HrpP compare
Psyr_3287 -1.6 -1.9 DNA topoisomerase I compare
Psyr_2256 -1.6 -1.8 ABC transporter compare
Psyr_3463 -1.6 -2.6 Flagellar protein FliS compare
Psyr_4740 -1.6 -3.6 thiazole-phosphate synthase compare
Psyr_0454 -1.6 -4.6 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_3284 -1.6 -1.3 SOS cell division inhibitor SulA compare
Psyr_0574 -1.6 -4.4 protease FtsH subunit HflK compare
Psyr_0081 -1.6 -1.2 ABC transporter compare
Psyr_5131 -1.6 -2.5 16S rRNA m(7)G-527 methyltransferase compare
Psyr_1678 -1.6 -0.9 Hypothetical protein compare
Psyr_4158 -1.6 -5.4 conserved hypothetical protein compare
Psyr_2095 -1.6 -2.7 Conserved TM helix compare
Psyr_5072 -1.6 -0.9 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_2733 -1.6 -1.7 Short-chain dehydrogenase/reductase SDR compare
Psyr_1317 -1.5 -1.6 conserved hypothetical protein compare
Psyr_0680 -1.5 -2.3 DNA helicase/exodeoxyribonuclease V, gamma subunit compare
Psyr_3324 -1.5 -2.7 transcriptional regulator, TetR family compare
Psyr_4417 -1.5 -1.5 Ferredoxin--nitrite reductase compare
Psyr_3665 -1.5 -2.7 conserved hypothetical protein compare
Psyr_4018 -1.5 -4.1 Formyltetrahydrofolate deformylase compare
Psyr_3459 -1.5 -1.7 Helix-turn-helix, Fis-type compare
Psyr_0319 -1.5 -3.8 conserved hypothetical protein compare
Psyr_3005 -1.5 -1.3 3-oxoadipate enol-lactonase compare
Psyr_1719 -1.5 -1.9 conserved hypothetical protein compare
Psyr_1975 -1.5 -2.2 Integrase, catalytic region compare
Psyr_3484 -1.5 -2.0 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_5065 -1.5 -5.7 ATP-dependent DNA helicase UvrD compare
Psyr_2077 -1.5 -3.4 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_1202 -1.5 -1.0 negative regulator of hrp expression HrpV compare
Psyr_0549 -1.5 -1.0 Metallophosphoesterase compare
Psyr_0936 -1.5 -5.8 Glycosyl transferase, group 1 compare
Psyr_3293 -1.5 -1.3 UspA compare
Psyr_0785 -1.5 -3.1 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer compare
Psyr_0579 -1.5 -7.1 RNAse R compare
Psyr_3755 -1.5 -1.5 conserved hypothetical protein compare
Psyr_4774 -1.4 -1.4 Hypothetical protein compare
Psyr_1499 -1.4 -1.9 Protein of unknown function DUF compare
Psyr_0168 -1.4 -4.2 Phosphoenolpyruvate carboxykinase (ATP) compare
Psyr_2476 -1.4 -1.8 Exodeoxyribonuclease III compare
Psyr_1747 -1.4 -3.6 ATP-dependent Clp protease proteolytic subunit ClpP compare
Psyr_0923 -1.4 -2.9 hypothetical protein compare
Psyr_1216 -1.4 -4.6 type III secretion outer membrane protein PopN compare
Psyr_2985 -1.4 -1.7 DNA-N1-methyladenine dioxygenase compare
Psyr_0038 -1.4 -2.0 Protein of unknown function DUF1161 compare


Specific Phenotypes

For 1 genes in this experiment