Experiment set2IT077 for Herbaspirillum seropedicae SmR1

Compare to:

LB with Dimethyl Sulfoxide 5 vol%

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS13885 +1.5 12.7 histidine kinase compare
HSERO_RS10175 +1.4 8.5 flagellar basal body P-ring biosynthesis protein FlgA compare
HSERO_RS22175 +1.4 1.9 hypothetical protein compare
HSERO_RS08725 +1.4 4.1 transcriptional regulator compare
HSERO_RS22350 +1.4 1.8 urea carboxylase compare
HSERO_RS14985 +1.4 6.9 transcriptional regulator compare
HSERO_RS05620 +1.4 2.0 dehydratase compare
HSERO_RS10200 +1.3 6.3 flagellar basal body rod protein FlgF compare
HSERO_RS10305 +1.3 4.9 flagellar motor switch protein FliG compare
HSERO_RS13890 +1.3 5.6 LuxR family transcriptional regulator compare
HSERO_RS10290 +1.3 6.5 flagellar biosynthesis protein FliJ compare
HSERO_RS10180 +1.2 1.8 flagellar biosynthesis protein FlgB compare
HSERO_RS10195 +1.2 6.9 flagellar hook protein FlgE compare
HSERO_RS21110 +1.2 5.8 dTDP-glucose 4,6-dehydratase compare
HSERO_RS10255 +1.2 2.0 flagellar biosynthesis protein FliQ compare
HSERO_RS16825 +1.1 2.9 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS10295 +1.1 6.0 ATP synthase compare
HSERO_RS10315 +1.1 6.1 flagellar hook-basal body protein FliE compare
HSERO_RS21085 +1.1 6.4 glycosyl transferase family 1 compare
HSERO_RS11855 +1.1 1.7 hypothetical protein compare
HSERO_RS10185 +1.0 7.5 flagellar basal body rod protein FlgC compare
HSERO_RS21090 +1.0 3.2 dTDP-4-dehydrorhamnose reductase compare
HSERO_RS10190 +1.0 4.7 flagellar basal body rod modification protein FlgD compare
HSERO_RS01915 +1.0 5.3 membrane protein compare
HSERO_RS10215 +1.0 2.6 flagellar P-ring protein FlgI compare
HSERO_RS10275 +1.0 3.8 flagellar motor switch protein FliM compare
HSERO_RS18740 +1.0 1.9 hypothetical protein compare
HSERO_RS03435 +1.0 1.5 bacterioferritin compare
HSERO_RS10285 +1.0 6.6 flagellar hook-length control protein compare
HSERO_RS21095 +1.0 4.9 UDP-glucose 4-epimerase compare
HSERO_RS21100 +1.0 6.2 UDP-N-acetylglucosamine 2-epimerase compare
HSERO_RS10945 +0.9 1.7 ribonuclease HII compare
HSERO_RS10030 +0.9 1.5 acyltransferase compare
HSERO_RS10145 +0.9 7.6 flagellar biosynthesis protein FlhA compare
HSERO_RS07255 +0.9 2.0 glutaminase compare
HSERO_RS10260 +0.9 4.9 flagellar biosynthesis protein FliP compare
HSERO_RS10205 +0.9 2.8 flagellar basal body rod protein FlgG compare
HSERO_RS14000 +0.9 2.3 hypothetical protein compare
HSERO_RS08950 +0.9 2.9 spermidine synthase compare
HSERO_RS10140 +0.9 4.8 flagellar biosynthesis protein FlhB compare
HSERO_RS11105 +0.9 1.6 beta-lactamase compare
HSERO_RS23270 +0.9 2.6 ABC transporter compare
HSERO_RS21745 +0.9 2.0 5'-methylthioadenosine nucleosidase compare
HSERO_RS05855 +0.9 4.7 flagellar motor protein MotA compare
HSERO_RS10265 +0.9 3.4 flagellar biosynthesis protein FliO compare
HSERO_RS06745 +0.9 1.2 hypothetical protein compare
HSERO_RS07445 +0.8 2.1 FMN reductase compare
HSERO_RS10310 +0.8 4.1 flagellar M-ring protein FliF compare
HSERO_RS10150 +0.8 4.8 flagellar biosynthesis regulator FlhF compare
HSERO_RS20975 +0.8 4.9 UDP-galactose-4-epimerase compare
HSERO_RS07710 +0.8 1.4 hypothetical protein compare
HSERO_RS10210 +0.8 1.8 flagellar L-ring protein FlgH compare
HSERO_RS15355 +0.8 1.8 hypothetical protein compare
HSERO_RS20705 +0.8 1.3 cobyrinic acid a,c-diamide synthase compare
HSERO_RS19770 +0.8 1.2 hypothetical protein compare
HSERO_RS09245 +0.8 1.0 carboxylesterase compare
HSERO_RS09360 +0.8 2.0 lysine transporter LysE compare
HSERO_RS21080 +0.8 3.2 glycosyl transferase compare
HSERO_RS22075 +0.8 2.1 phosphohexose mutase compare
HSERO_RS16490 +0.8 5.4 FimV compare
HSERO_RS08305 +0.7 1.8 hypothetical protein compare
HSERO_RS17220 +0.7 2.2 membrane protein compare
HSERO_RS21615 +0.7 1.4 ABC transporter substrate-binding protein compare
HSERO_RS01985 +0.7 2.0 energy transducer TonB compare
HSERO_RS02760 +0.7 1.4 hypothetical protein compare
HSERO_RS15055 +0.7 0.9 membrane protein compare
HSERO_RS06465 +0.7 1.7 cell envelope biogenesis protein OmpA compare
HSERO_RS11490 +0.7 5.0 D-ribose ABC transporter, permease component RbsC (from data) compare
HSERO_RS04165 +0.7 1.2 hypothetical protein compare
HSERO_RS02780 +0.7 1.5 hypothetical protein compare
HSERO_RS01965 +0.7 2.7 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
HSERO_RS17270 +0.7 5.4 glucan biosynthesis protein D compare
HSERO_RS08335 +0.7 1.1 4-hydroxyphenylpyruvate dioxygenase compare
HSERO_RS23765 +0.7 2.0 hypothetical protein compare
HSERO_RS02425 +0.7 3.5 transcriptional activator compare
HSERO_RS14970 +0.7 3.0 flagellar motor protein MotB compare
HSERO_RS03865 +0.7 2.2 hypothetical protein compare
HSERO_RS21735 +0.7 1.8 hypothetical protein compare
HSERO_RS03120 +0.7 1.9 chemotaxis protein CheW compare
HSERO_RS09745 +0.7 1.0 chemotaxis protein CheY compare
HSERO_RS13645 +0.7 3.0 membrane protein compare
HSERO_RS19090 +0.7 0.7 C4-dicarboxylate ABC transporter compare
HSERO_RS10155 +0.7 1.9 antiactivator of flagellar biosynthesis FleN protein compare
HSERO_RS07380 +0.7 1.0 hypothetical protein compare
HSERO_RS17855 +0.7 1.1 DEAD/DEAH box helicase compare
HSERO_RS22285 +0.7 2.4 GntR family transcriptional regulator compare
HSERO_RS04970 +0.6 1.4 dioxygenase compare
HSERO_RS16105 +0.6 1.9 histidine kinase compare
HSERO_RS13700 +0.6 2.5 Fis family transcriptional regulator compare
HSERO_RS03465 +0.6 0.8 hemin transporter compare
HSERO_RS05245 +0.6 1.8 hypothetical protein compare
HSERO_RS21655 +0.6 2.9 elongation factor G compare
HSERO_RS10330 +0.6 4.2 flagellar hook-length control protein FliK compare
HSERO_RS04065 +0.6 1.4 pilus biosynthesis protein PilS compare
HSERO_RS02105 +0.6 1.8 hypothetical protein compare
HSERO_RS12625 +0.6 1.5 sulfonate ABC transporter ATP-binding lipoprotein compare
HSERO_RS21500 +0.6 2.4 hypothetical protein compare
HSERO_RS19535 +0.6 0.8 nucleotide-binding protein compare
HSERO_RS16910 +0.6 1.4 hypothetical protein compare
HSERO_RS02140 +0.6 0.7 thiamine-phosphate synthase compare
HSERO_RS23450 +0.6 2.2 hypothetical protein compare
HSERO_RS07260 +0.6 1.5 diguanylate cyclase compare
HSERO_RS01590 +0.6 1.5 antibiotic biosynthesis monooxygenase compare
HSERO_RS21150 +0.6 1.9 aldolase compare
HSERO_RS22095 +0.6 1.4 hypothetical protein compare
HSERO_RS01920 +0.6 2.5 50S ribosomal protein L11 methyltransferase compare
HSERO_RS10160 +0.6 2.7 flagellar biosynthesis sigma factor compare
HSERO_RS02275 +0.6 0.8 hypothetical protein compare
HSERO_RS14015 +0.6 1.3 hisitidine kinase compare
HSERO_RS14975 +0.6 3.2 flagellar motor protein MotA compare
HSERO_RS11890 +0.6 1.1 histidine kinase compare
HSERO_RS03625 +0.6 2.0 nicotinamidase-like protein compare
HSERO_RS11430 +0.6 1.7 GntR family transcriptional regulator compare
HSERO_RS23545 +0.6 2.8 sodium transporter compare
HSERO_RS16680 +0.6 0.8 GntR family transcriptional regulator compare
HSERO_RS21540 +0.6 1.5 alkyl hydroperoxide reductase subunit C compare
HSERO_RS05980 +0.6 1.1 aldehyde dehydrogenase compare
HSERO_RS12775 +0.6 2.1 ABC transporter substrate-binding protein compare
HSERO_RS18630 +0.6 0.8 hemerythrin compare
HSERO_RS07840 +0.6 1.5 methionine ABC transporter substrate-binding protein compare
HSERO_RS05265 +0.6 1.7 L-fucono-1,5-lactonase (from data) compare
HSERO_RS22420 +0.6 0.9 azoreductase compare
HSERO_RS18935 +0.6 3.4 LysR family transcriptional regulator compare
HSERO_RS17080 +0.6 1.3 hypothetical protein compare
HSERO_RS10250 +0.6 2.3 flagellar biosynthesis protein FliR compare
HSERO_RS16505 +0.6 1.9 3-isopropylmalate dehydratase small subunit compare
HSERO_RS19980 +0.6 1.7 ABC transporter permease compare
HSERO_RS11665 +0.6 1.1 nitrate ABC transporter ATP-binding protein compare
HSERO_RS02065 +0.5 1.5 hypothetical protein compare
HSERO_RS05070 +0.5 3.6 UDP-glucose 4-epimerase compare
HSERO_RS13930 +0.5 3.6 competence protein ComEC compare
HSERO_RS19915 +0.5 1.9 IclR family transcriptional regulator compare
HSERO_RS04645 +0.5 1.7 AraC family transcriptional regulator compare
HSERO_RS00290 +0.5 2.1 nitrate ABC transporter substrate-binding protein compare
HSERO_RS22065 +0.5 1.5 EpiA compare
HSERO_RS07480 +0.5 2.4 nitrate ABC transporter ATP-binding protein compare
HSERO_RS04045 +0.5 1.7 pilus assembly protein compare
HSERO_RS23525 +0.5 1.7 hypothetical protein compare
HSERO_RS19160 +0.5 1.9 divalent cation transporter compare
HSERO_RS16480 +0.5 0.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS01880 +0.5 1.4 N-acetyl-anhydromuranmyl-L-alanine amidase compare
HSERO_RS11800 +0.5 1.3 hypothetical protein compare
HSERO_RS12045 +0.5 1.9 trans-aconitate 2-methyltransferase compare
HSERO_RS09160 +0.5 1.5 amidase compare
HSERO_RS17265 +0.5 3.0 glucosyltransferase MdoH compare
HSERO_RS22890 +0.5 2.3 hypothetical protein compare
HSERO_RS09115 +0.5 2.2 hypothetical protein compare
HSERO_RS14260 +0.5 1.0 ferredoxin compare
HSERO_RS04890 +0.5 1.7 Fosmidomycin resistance protein compare
HSERO_RS22100 +0.5 2.8 hypothetical protein compare
HSERO_RS09085 +0.5 1.2 LysR family transcriptional regulator compare
HSERO_RS06240 +0.5 3.0 hypothetical protein compare
HSERO_RS01710 +0.5 2.2 metalloendopeptidase compare
HSERO_RS01270 +0.5 1.3 enoyl-CoA hydratase compare
HSERO_RS10570 +0.5 1.5 molybdenum ABC transporter ATPase compare
HSERO_RS14525 +0.5 1.8 membrane protein compare
HSERO_RS09845 +0.5 2.4 alpha/beta hydrolase compare
HSERO_RS03915 +0.5 0.4 hypothetical protein compare
HSERO_RS23285 +0.5 2.5 membrane protein compare
HSERO_RS11345 +0.5 0.5 hypothetical protein compare
HSERO_RS12075 +0.5 1.4 serine protease compare
HSERO_RS21405 +0.5 2.4 glutathione S-transferase compare
HSERO_RS13640 +0.5 0.9 hypothetical protein compare
HSERO_RS07720 +0.5 2.9 hypothetical protein compare
HSERO_RS08135 +0.5 2.5 C-5 sterol desaturase compare
HSERO_RS13130 +0.5 1.8 LysR family transcriptional regulator compare
HSERO_RS08095 +0.5 2.7 ABC transporter substrate-binding protein compare
HSERO_RS08700 +0.5 0.7 hypothetical protein compare
HSERO_RS16305 +0.5 1.1 hypothetical protein compare
HSERO_RS08355 +0.5 1.8 dioxygenase compare
HSERO_RS19155 +0.5 1.3 LysR family transcriptional regulator compare
HSERO_RS13745 +0.5 1.8 chain-length determining protein compare
HSERO_RS01180 +0.5 3.5 acetyl-CoA acetyltransferase compare
HSERO_RS08075 +0.5 0.5 ferredoxin compare
HSERO_RS04740 +0.5 1.3 dienelactone hydrolase compare
HSERO_RS23835 +0.5 1.9 transporter compare
HSERO_RS02025 +0.5 2.2 D-tyrosyl-tRNA(Tyr) deacylase compare
HSERO_RS16595 +0.5 1.2 hypothetical protein compare
HSERO_RS09480 +0.5 1.3 radical SAM protein compare
HSERO_RS13755 +0.5 1.9 hypothetical protein compare
HSERO_RS23895 +0.5 2.6 amidophosphoribosyltransferase compare
HSERO_RS09810 +0.5 2.3 heat shock protein HtpX compare
HSERO_RS12420 +0.5 1.2 transcriptional regulator compare
HSERO_RS15365 +0.5 1.1 MarR family transcriptional regulator compare
HSERO_RS00880 +0.5 1.8 ornithine cyclodeaminase compare
HSERO_RS03670 +0.5 0.8 hypothetical protein compare
HSERO_RS19940 +0.5 1.5 ABC transporter substrate-binding protein compare
HSERO_RS14510 +0.5 1.5 AraC family transcriptional regulator compare
HSERO_RS16940 +0.5 1.9 hypothetical protein compare
HSERO_RS19310 +0.5 1.1 membrane protein compare
HSERO_RS20040 +0.5 2.1 4-hydroxybenzoyl-CoA thioesterase compare
HSERO_RS04005 +0.5 1.6 type III secretion protein compare
HSERO_RS18485 +0.5 2.3 membrane protein compare
HSERO_RS16070 +0.5 0.7 cytochrome biogenesis protein compare
HSERO_RS22750 +0.5 1.9 sugar ABC transporter ATP-binding protein compare
HSERO_RS06970 +0.5 1.4 cytochrome C553 compare
HSERO_RS18845 +0.5 0.8 hypothetical protein compare
HSERO_RS20090 +0.4 0.9 gluconolactonase compare
HSERO_RS06505 +0.4 2.4 hypothetical protein compare
HSERO_RS13800 +0.4 1.3 glycosyl transferase family 1 compare


Specific Phenotypes

For 2 genes in this experiment

For stress Dimethyl Sulfoxide in Herbaspirillum seropedicae SmR1

For stress Dimethyl Sulfoxide across organisms