Experiment set2IT077 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Alanine carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS18305 -6.6 -4.5 anthranilate phosphoribosyltransferase compare
RR42_RS14390 -6.3 -4.3 3-isopropylmalate dehydratase compare
RR42_RS06485 -6.2 -6.1 chorismate synthase compare
RR42_RS14400 -6.2 -4.3 isopropylmalate isomerase compare
RR42_RS05860 -5.4 -5.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS11795 -5.1 -4.5 PEP synthetase regulatory protein compare
RR42_RS19005 -5.1 -4.9 3-dehydroquinate synthase compare
RR42_RS04475 -5.0 -11.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS18300 -5.0 -6.3 anthranilate synthase subunit II compare
RR42_RS01160 -4.8 -10.1 homoserine O-acetyltransferase compare
RR42_RS14365 -4.8 -3.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS18295 -4.7 -12.9 anthranilate synthase component I compare
RR42_RS14385 -4.4 -6.7 3-isopropylmalate dehydrogenase compare
RR42_RS12040 -4.3 -13.3 MFS transporter compare
RR42_RS33240 -4.2 -17.9 GDP-L-fucose synthase compare
RR42_RS01385 -4.2 -3.8 5,10-methylenetetrahydrofolate reductase compare
RR42_RS16265 -4.0 -6.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS33250 -4.0 -8.8 tyrosine protein kinase compare
RR42_RS07555 -3.9 -3.7 potassium transporter Kup compare
RR42_RS11790 -3.9 -11.7 phosphoenolpyruvate synthase compare
RR42_RS33260 -3.8 -7.9 multidrug MFS transporter compare
RR42_RS16250 -3.7 -9.1 sulfate adenylyltransferase compare
RR42_RS33255 -3.5 -4.6 protein-tyrosine phosphatase compare
RR42_RS14320 -3.4 -4.4 O-succinylhomoserine sulfhydrylase compare
RR42_RS33235 -3.4 -10.7 GDP-mannose 4,6-dehydratase compare
RR42_RS33210 -3.3 -5.9 teichoic acid biosynthesis protein compare
RR42_RS01845 -3.3 -2.0 glycerol-3-phosphate dehydrogenase compare
RR42_RS16270 -3.3 -11.8 sulfite reductase compare
RR42_RS33245 -3.2 -9.3 mannose-1-phosphate guanyltransferase compare
RR42_RS20205 -3.2 -3.1 chromosome partitioning protein compare
RR42_RS16255 -3.1 -7.5 sulfate adenylyltransferase compare
RR42_RS03095 -3.0 -3.2 succinyl-CoA synthetase subunit beta compare
RR42_RS15905 -2.9 -11.1 phosphoenolpyruvate carboxylase compare
RR42_RS15410 -2.9 -4.7 membrane protein compare
RR42_RS04460 -2.8 -5.2 chorismate mutase compare
RR42_RS32740 -2.8 -1.6 enoyl-CoA hydratase compare
RR42_RS16245 -2.8 -4.3 uroporphyrin-III methyltransferase compare
RR42_RS18820 -2.8 -8.5 cytochrome B compare
RR42_RS19010 -2.7 -8.1 shikimate kinase compare
RR42_RS16280 -2.7 -6.5 transcriptional regulator compare
RR42_RS16240 -2.6 -1.4 cobalamin biosynthesis protein CbiX compare
RR42_RS01290 -2.6 -4.8 thiamine biosynthesis protein ThiC compare
RR42_RS18815 -2.5 -4.7 cytochrome C compare
RR42_RS17645 -2.5 -8.8 shikimate dehydrogenase compare
RR42_RS21220 -2.4 -1.6 iron transporter FeoB compare
RR42_RS18855 -2.4 -4.5 preprotein translocase compare
RR42_RS14360 -2.4 -2.0 tryptophan synthase subunit alpha compare
RR42_RS15525 -2.4 -1.4 hypothetical protein compare
RR42_RS19885 -2.4 -1.9 aminoglycoside transporter compare
RR42_RS15890 -2.4 -9.2 heme biosynthesis protein HemY compare
RR42_RS07605 -2.4 -6.0 poly-beta-hydroxybutyrate polymerase compare
RR42_RS26900 -2.3 -3.4 enoyl-CoA hydratase compare
RR42_RS15895 -2.2 -7.7 uroporphyrinogen III methyltransferase compare
RR42_RS18850 -2.2 -2.5 preprotein translocase subunit TatC compare
RR42_RS16260 -2.2 -2.8 phosphoadenosine phosphosulfate reductase compare
RR42_RS18990 -2.2 -14.6 glutamate synthase compare
RR42_RS02045 -2.2 -10.4 GTPase compare
RR42_RS17060 -2.1 -14.1 histidine kinase compare
RR42_RS04535 -2.1 -6.1 cysteine synthase compare
RR42_RS17105 -2.1 -9.3 Clp protease ClpX compare
RR42_RS26905 -2.1 -6.5 methylcrotonoyl-CoA carboxylase compare
RR42_RS18985 -2.0 -5.6 glutamate synthase compare
RR42_RS18310 -2.0 -1.6 indole-3-glycerol-phosphate synthase compare
RR42_RS17055 -1.9 -7.6 LuxR family transcriptional regulator compare
RR42_RS04895 -1.9 -8.1 serine/threonine protein phosphatase compare
RR42_RS24605 -1.9 -6.3 TetR family transcriptional regulator compare
RR42_RS34255 -1.9 -7.7 aldehyde dehydrogenase compare
RR42_RS33575 -1.8 -2.1 hypothetical protein compare
RR42_RS22495 -1.8 -2.5 hypothetical protein compare
RR42_RS02705 -1.8 -2.6 Holliday junction DNA helicase RuvA compare
RR42_RS02500 -1.8 -2.4 TetR family transcriptional regulator compare
RR42_RS35875 -1.8 -7.3 UDP-galactose-4-epimerase compare
RR42_RS10415 -1.7 -1.7 hypothetical protein compare
RR42_RS33215 -1.7 -9.3 transferase compare
RR42_RS01915 -1.7 -5.4 cytochrome C oxidase subunit I compare
RR42_RS19090 -1.7 -1.7 cytochrome C compare
RR42_RS15415 -1.7 -3.4 membrane protein compare
RR42_RS30660 -1.7 -7.6 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS14055 -1.6 -3.1 elongation factor 4 compare
RR42_RS18825 -1.6 -4.3 ubiquinol-cytochrome C reductase compare
RR42_RS21150 -1.6 -1.8 hypothetical protein compare
RR42_RS05990 -1.6 -5.6 aromatic amino acid aminotransferase compare
RR42_RS34815 -1.6 -3.6 diguanylate cyclase compare
RR42_RS00380 -1.6 -5.5 GntR family transcriptional regulator compare
RR42_RS04700 -1.6 -1.8 ribonuclease G compare
RR42_RS33195 -1.5 -7.7 UDP-sugar lipid carrier transferase compare
RR42_RS14845 -1.5 -2.2 MarR family transcriptional regulator compare
RR42_RS25785 -1.5 -2.2 TetR family transcriptional regulator compare
RR42_RS15035 -1.4 -3.7 ZIP zinc transporter compare
RR42_RS26265 -1.4 -1.4 hypothetical protein compare
RR42_RS00760 -1.4 -2.9 hypothetical protein compare
RR42_RS24535 -1.4 -1.9 tRNA-Asn compare
RR42_RS26555 -1.4 -1.7 tRNA-Met compare
RR42_RS16275 -1.4 -2.6 membrane protein compare
RR42_RS00790 -1.4 -6.7 chemotaxis protein CheY compare
RR42_RS27710 -1.4 -1.8 LysR family transcriptional regulator compare
RR42_RS18930 -1.4 -4.7 BolA family transcriptional regulator compare
RR42_RS24665 -1.3 -2.3 hypothetical protein compare
RR42_RS04590 -1.3 -7.6 AsnC family transcriptional regulator compare
RR42_RS19795 -1.3 -3.0 GntR family transcriptional regulator compare
RR42_RS16525 -1.3 -3.2 anti-sigma factor compare
RR42_RS19045 -1.3 -1.3 frataxin compare
RR42_RS03020 -1.3 -1.3 MarR family transcriptional regulator compare
RR42_RS12550 -1.3 -3.5 hypothetical protein compare
RR42_RS01895 -1.3 -4.4 MFS transporter compare
RR42_RS05955 -1.2 -1.3 hypothetical protein compare
RR42_RS30655 -1.2 -3.2 LysR family transcriptional regulator compare
RR42_RS01720 -1.2 -1.7 membrane protein compare
RR42_RS05665 -1.2 -1.3 urease accessory protein UreJ compare
RR42_RS13910 -1.2 -6.4 glutamate racemase compare
RR42_RS18270 -1.2 -3.1 murein transglycosylase compare
RR42_RS04470 -1.2 -2.8 prephenate dehydrogenase compare
RR42_RS01885 -1.2 -3.0 cytochrome C oxidase assembly protein compare
RR42_RS14790 -1.2 -5.7 cobalamin biosynthesis protein CobD compare
RR42_RS13025 -1.2 -2.6 hypothetical protein compare
RR42_RS01910 -1.2 -4.5 cytochrome C oxidase subunit I compare
RR42_RS33355 -1.2 -3.6 membrane protein compare
RR42_RS33815 -1.2 -1.0 isochorismatase compare
RR42_RS01880 -1.1 -4.3 cytochrome oxidase subunit I compare
RR42_RS02085 -1.1 -3.5 RNA polymerase subunit sigma-54 compare
RR42_RS14775 -1.1 -5.1 peptidase M48 compare
RR42_RS17390 -1.1 -4.3 ATP-dependent DNA helicase RecG compare
RR42_RS12925 -1.1 -2.4 ATPase compare
RR42_RS23730 -1.1 -3.5 phenylacetate-CoA oxygenase subunit PaaB compare
RR42_RS05420 -1.1 -3.7 membrane protein compare
RR42_RS26935 -1.1 -3.8 farnesyl-diphosphate farnesyltransferase compare
RR42_RS21000 -1.1 -1.7 glycosyl transferase compare
RR42_RS01875 -1.1 -4.8 cytochrome C oxidase subunit II compare
RR42_RS04015 -1.1 -1.4 RNA polymerase sigma factor compare
RR42_RS18140 -1.1 -1.5 MarR family transcriptional regulator compare
RR42_RS07620 -1.1 -2.9 polyhydroxyalkanoate synthesis repressor PhaR compare
RR42_RS29865 -1.1 -1.9 hypothetical protein compare
RR42_RS07565 -1.1 -4.8 transcription accessory protein compare
RR42_RS19065 -1.1 -6.8 transcriptional regulator compare
RR42_RS15470 -1.1 -1.4 biopolymer transporter ExbD compare
RR42_RS24820 -1.1 -2.5 hypothetical protein compare
RR42_RS06095 -1.1 -2.3 hypothetical protein compare
RR42_RS25200 -1.1 -2.4 TetR family transcriptional regulator compare
RR42_RS04585 -1.1 -4.4 amino acid dehydrogenase compare
RR42_RS35780 -1.1 -1.6 chemotaxis protein CheY compare
RR42_RS27160 -1.1 -1.6 acetyl-CoA acetyltransferase compare
RR42_RS05750 -1.0 -1.2 fructose 2,6-bisphosphatase compare
RR42_RS17565 -1.0 -6.4 LysR family transcriptional regulator compare
RR42_RS19085 -1.0 -1.2 cytochrome C biogenesis protein ResB compare
RR42_RS17375 -1.0 -1.2 hypothetical protein compare
RR42_RS11225 -1.0 -1.6 peptide ABC transporter permease compare
RR42_RS06875 -1.0 -1.4 hypothetical protein compare
RR42_RS13190 -1.0 -2.6 outer membrane metallopeptidase lipoprotein nlpD compare
RR42_RS23565 -1.0 -1.0 flagellar motor switch protein G compare
RR42_RS07385 -1.0 -2.5 Phasin (PHA-granule associated protein) compare
RR42_RS12175 -1.0 -6.5 malate synthase compare
RR42_RS00955 -1.0 -3.6 hydroxymethylglutaryl-CoA lyase compare
RR42_RS29785 -1.0 -1.7 hypothetical protein compare
RR42_RS10240 -1.0 -2.3 hypothetical protein compare
RR42_RS13935 -0.9 -2.2 hemin transporter compare
RR42_RS20305 -0.9 -4.4 metal ABC transporter ATPase compare
RR42_RS21820 -0.9 -2.9 GntR family transcriptional regulator compare
RR42_RS24930 -0.9 -0.8 AraC family transcriptional regulator compare
RR42_RS14520 -0.9 -1.5 mobilization protein compare
RR42_RS17685 -0.9 -4.0 alkyl hydroperoxide reductase compare
RR42_RS13880 -0.9 -6.6 AMP-dependent synthetase compare
RR42_RS17930 -0.9 -2.5 RNA pyrophosphohydrolase compare
RR42_RS01795 -0.9 -6.2 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS11770 -0.9 -1.6 cyclase compare
RR42_RS11080 -0.9 -1.5 phenylacetic acid degradation protein compare
RR42_RS34650 -0.9 -3.8 LacI family transcriptional regulator compare
RR42_RS20195 -0.9 -0.9 ATPase F0F1 compare
RR42_RS18365 -0.9 -3.4 GTP-binding protein compare
RR42_RS15090 -0.9 -3.6 DNA helicase compare
RR42_RS03080 -0.9 -2.7 recombinase RecA compare
RR42_RS17110 -0.9 -4.1 ATP-dependent Clp protease adapter protein ClpS compare
RR42_RS18730 -0.9 -1.8 hypothetical protein compare
RR42_RS15970 -0.9 -1.3 lipoprotein compare
RR42_RS03415 -0.9 -3.6 N-acetylmuramoyl-L-alanine amidase compare
RR42_RS27120 -0.9 -0.9 amino acid ABC transporter permease compare
RR42_RS13800 -0.9 -3.2 formyltetrahydrofolate deformylase compare
RR42_RS28720 -0.8 -1.8 hypothetical protein compare
RR42_RS02440 -0.8 -1.9 membrane protein compare
RR42_RS21595 -0.8 -1.4 IclR family transcriptional regulator compare
RR42_RS19690 -0.8 -2.3 Tat pathway signal protein compare
RR42_RS04300 -0.8 -2.0 nitrogen regulatory protein P-II 1 compare
RR42_RS36330 -0.8 -2.5 nitronate monooxygenase compare
RR42_RS26455 -0.8 -0.9 amino acid ABC transporter ATP-binding protein compare
RR42_RS05810 -0.8 -1.6 RNA polymerase sigma factor compare
RR42_RS14355 -0.8 -3.0 DNA methylase N-4 compare
RR42_RS04320 -0.8 -3.5 cell division protein FtsK compare
RR42_RS26895 -0.8 -2.8 3-methylcrotonyl-CoA carboxylase compare
RR42_RS31285 -0.8 -1.4 XRE family transcriptional regulator compare
RR42_RS14965 -0.8 -2.3 hypothetical protein compare
RR42_RS03630 -0.8 -0.9 cold-shock protein compare
RR42_RS07890 -0.8 -2.4 hypothetical protein compare
RR42_RS20350 -0.8 -1.9 hypothetical protein compare
RR42_RS06630 -0.8 -1.6 integration host factor subunit alpha compare
RR42_RS36105 -0.8 -1.7 MarR family transcriptional regulator compare
RR42_RS00805 -0.8 -2.2 membrane protein compare
RR42_RS07425 -0.8 -3.9 IclR family transcriptional regulator compare
RR42_RS25600 -0.8 -1.9 AraC family transcriptional regulator compare
RR42_RS15420 -0.8 -2.9 hypothetical protein compare
RR42_RS15710 -0.8 -3.7 LPS biosynthesis protein compare
RR42_RS35895 -0.8 -2.4 PadR family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in carbon source experiments

For carbon source L-Alanine across organisms