Experiment set2IT077 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Alanine carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS29610 +2.1 1.5 cytochrome C2 compare
RR42_RS20370 +1.7 1.4 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS09555 +1.5 3.3 universal stress protein UspA compare
RR42_RS05755 +1.5 4.3 enoyl-CoA hydratase compare
RR42_RS19485 +1.3 1.9 general secretion pathway protein GspH compare
RR42_RS36795 +1.1 2.4 fumarate hydratase compare
RR42_RS07140 +1.1 1.7 hypothetical protein compare
RR42_RS23140 +1.1 1.5 peptidylprolyl isomerase compare
RR42_RS11460 +1.1 6.4 pyrroloquinoline quinone biosynthesis protein PqqB compare
RR42_RS22165 +1.1 2.3 hypothetical protein compare
RR42_RS08220 +1.1 2.3 hypothetical protein compare
RR42_RS24550 +1.0 1.2 hypothetical protein compare
RR42_RS08185 +1.0 1.6 hypothetical protein compare
RR42_RS20310 +1.0 1.5 copper-binding protein compare
RR42_RS25650 +1.0 1.8 hypothetical protein compare
RR42_RS08770 +1.0 1.1 2-nitropropane dioxygenase compare
RR42_RS06240 +1.0 2.0 tryptophan--tRNA ligase compare
RR42_RS11465 +0.9 4.1 pyrroloquinoline quinone biosynthesis protein PqqC compare
RR42_RS20810 +0.9 2.4 hypothetical protein compare
RR42_RS04850 +0.9 1.3 hypothetical protein compare
RR42_RS13830 +0.9 1.5 hypothetical protein compare
RR42_RS19635 +0.9 1.3 hypothetical protein compare
RR42_RS30765 +0.9 1.2 tRNA-Arg compare
RR42_RS03035 +0.9 1.1 membrane protein compare
RR42_RS24785 +0.8 4.4 NAD-dependent dehydratase compare
RR42_RS28290 +0.8 3.7 DNA-binding protein compare
RR42_RS14235 +0.8 1.3 hypothetical protein compare
RR42_RS25015 +0.8 2.2 gluconolactonase compare
RR42_RS13420 +0.8 2.6 phosphohistidine phosphatase compare
RR42_RS20095 +0.8 1.7 peroxiredoxin compare
RR42_RS25660 +0.8 2.5 cytochrome C biogenesis protein compare
RR42_RS34450 +0.8 3.3 glycosyl transferase compare
RR42_RS01630 +0.8 1.3 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS22590 +0.8 1.0 organic hydroperoxide resistance protein compare
RR42_RS15060 +0.8 2.0 membrane protein compare
RR42_RS36350 +0.7 2.0 D-amino acid oxidase compare
RR42_RS11785 +0.7 1.6 NfeD-like family protein 1 compare
RR42_RS15755 +0.7 2.5 acetyltransferase compare
RR42_RS21470 +0.7 0.8 hypothetical protein compare
RR42_RS26740 +0.7 1.5 protein serine/threonine phosphatase compare
RR42_RS16685 +0.7 1.8 tRNA-Leu compare
RR42_RS22845 +0.7 1.9 cell envelope biogenesis protein OmpA compare
RR42_RS22275 +0.7 1.6 hypothetical protein compare
RR42_RS19830 +0.7 1.9 LysR family transcriptional regulator compare
RR42_RS23295 +0.7 1.6 hypothetical protein compare
RR42_RS03000 +0.7 2.7 ABC transporter substrate-binding protein compare
RR42_RS21690 +0.7 0.9 acetyltransferase compare
RR42_RS08025 +0.7 1.2 phage Gp37Gp68 compare
RR42_RS26485 +0.7 1.6 2,5-dihydroxypyridine 5,6-dioxygenase compare
RR42_RS23205 +0.7 0.9 hypothetical protein compare
RR42_RS21380 +0.7 1.5 cupin compare
RR42_RS33145 +0.7 1.6 hypothetical protein compare
RR42_RS07090 +0.7 2.6 hypothetical protein compare
RR42_RS21755 +0.7 1.1 shikimate dehydrogenase compare
RR42_RS27885 +0.7 1.2 2-keto-4-pentenoate hydratase compare
RR42_RS33870 +0.7 2.6 hypothetical protein compare
RR42_RS32700 +0.7 2.6 alpha/beta hydrolase compare
RR42_RS28065 +0.7 1.9 ribose-phosphate pyrophosphokinase compare
RR42_RS34570 +0.7 1.1 hypothetical protein compare
RR42_RS31995 +0.7 1.5 flavin reductase compare
RR42_RS03920 +0.7 1.9 rubredoxin compare
RR42_RS25720 +0.7 2.0 hypothetical protein compare
RR42_RS00755 +0.7 2.3 3-oxoadipate enol-lactonase compare
RR42_RS31715 +0.7 1.7 hypothetical protein compare
RR42_RS11200 +0.6 3.1 XRE family transcriptional regulator compare
RR42_RS12430 +0.6 1.0 LysR family transcriptional regulator compare
RR42_RS37245 +0.6 2.3 MazF family transcriptional regulator compare
RR42_RS08030 +0.6 1.4 hypothetical protein compare
RR42_RS10440 +0.6 1.1 heat-shock protein compare
RR42_RS01330 +0.6 2.4 Fis family transcriptional regulator compare
RR42_RS22400 +0.6 2.2 FMN reductase compare
RR42_RS06740 +0.6 2.2 hypothetical protein compare
RR42_RS03980 +0.6 1.9 Fis family transcriptional regulator compare
RR42_RS26220 +0.6 1.2 citrate lyase subunit beta compare
RR42_RS06735 +0.6 1.0 hypothetical protein compare
RR42_RS30735 +0.6 1.3 tRNA-Met compare
RR42_RS30445 +0.6 1.5 cation:proton antiporter compare
RR42_RS35995 +0.6 1.9 membrane protein compare
RR42_RS13675 +0.6 1.7 short-chain dehydrogenase compare
RR42_RS34565 +0.6 1.3 GDP-mannose mannosyl hydrolase compare
RR42_RS21020 +0.6 2.9 hypothetical protein compare
RR42_RS36360 +0.6 1.7 pyridine nucleotide-disulfide oxidoreductase compare
RR42_RS10020 +0.6 2.0 4-methylmuconolactone methylisomerase compare
RR42_RS04560 +0.6 2.0 methionine ABC transporter permease compare
RR42_RS23230 +0.6 1.0 glycerate kinase compare
RR42_RS02930 +0.6 1.3 AsnC family transcriptional regulator compare
RR42_RS27395 +0.6 2.2 GntR family transcriptional regulator compare
RR42_RS05670 +0.6 1.6 urease subunit beta compare
RR42_RS29280 +0.6 0.9 hypothetical protein compare
RR42_RS00685 +0.6 2.4 iron ABC transporter ATP-binding protein compare
RR42_RS05260 +0.6 2.6 purine permease compare
RR42_RS06505 +0.6 2.5 hypothetical protein compare
RR42_RS15290 +0.6 1.1 cupin compare
RR42_RS09180 +0.6 0.8 Rrf2 family transcriptional regulator compare
RR42_RS09000 +0.6 2.5 hypothetical protein compare
RR42_RS16460 +0.6 1.4 cupin compare
RR42_RS13850 +0.6 1.8 hypothetical protein compare
RR42_RS14860 +0.6 1.1 hypothetical protein compare
RR42_RS23595 +0.6 1.4 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS07705 +0.6 2.0 hypothetical protein compare
RR42_RS26050 +0.6 1.5 hypothetical protein compare
RR42_RS20295 +0.6 1.6 alpha/beta hydrolase compare
RR42_RS26620 +0.5 1.7 hypothetical protein compare
RR42_RS23250 +0.5 1.7 glyoxalase compare
RR42_RS30595 +0.5 2.2 hypothetical protein compare
RR42_RS18610 +0.5 2.0 hypothetical protein compare
RR42_RS25510 +0.5 1.2 short-chain dehydrogenase compare
RR42_RS36570 +0.5 1.2 prevent-host-death protein compare
RR42_RS31300 +0.5 2.0 TetR family transcriptional regulator compare
RR42_RS25235 +0.5 2.4 DSBA oxidoreductase compare
RR42_RS16335 +0.5 1.1 hypothetical protein compare
RR42_RS33940 +0.5 1.4 naphthalene 1,2-dioxygenase compare
RR42_RS32960 +0.5 1.4 2-dehydropantoate 2-reductase compare
RR42_RS12250 +0.5 1.7 sulfate ABC transporter ATP-binding protein compare
RR42_RS21780 +0.5 2.8 bleomycin resistance protein compare
RR42_RS08450 +0.5 1.2 hypothetical protein compare
RR42_RS21605 +0.5 1.2 S-adenosylhomocysteine hydrolase compare
RR42_RS33595 +0.5 1.4 hypothetical protein compare
RR42_RS08585 +0.5 1.7 baseplate assembly protein compare
RR42_RS16565 +0.5 1.1 hypothetical protein compare
RR42_RS17255 +0.5 1.8 ABC transporter permease compare
RR42_RS30865 +0.5 2.3 tat pathway signal sequence compare
RR42_RS08295 +0.5 2.3 hypothetical protein compare
RR42_RS17775 +0.5 2.1 Fe(II)-dependent oxygenase compare
RR42_RS12875 +0.5 1.2 transcriptional regulator compare
RR42_RS28800 +0.5 3.3 isocitrate dehydrogenase compare
RR42_RS16195 +0.5 1.0 haloacid dehalogenase compare
RR42_RS33650 +0.5 1.5 IclR family transcriptional regulator compare
RR42_RS36275 +0.5 2.5 ABC transporter substrate-binding protein compare
RR42_RS14700 +0.5 1.3 hypothetical protein compare
RR42_RS27330 +0.5 2.6 ornithine cyclodeaminase compare
RR42_RS16360 +0.5 0.9 transposase compare
RR42_RS25685 +0.5 1.9 chromate resistance protein compare
RR42_RS27440 +0.5 1.8 hypothetical protein compare
RR42_RS11805 +0.5 1.2 ribonuclease HII compare
RR42_RS02225 +0.5 1.3 ABC transporter substrate-binding protein compare
RR42_RS07130 +0.5 0.6 hypothetical protein compare
RR42_RS06850 +0.5 0.9 hypothetical protein compare
RR42_RS28085 +0.5 1.1 alkylphosphonate utilization protein PhnG compare
RR42_RS16570 +0.5 1.8 2-nitropropane dioxygenase compare
RR42_RS05905 +0.5 1.5 hypothetical protein compare
RR42_RS09060 +0.5 1.1 glucose-6-phosphate isomerase compare
RR42_RS14595 +0.5 2.7 2-aminoadipate aminotransferase compare
RR42_RS34730 +0.5 2.7 chemotaxis protein compare
RR42_RS32735 +0.5 2.1 3-methylcrotonyl-CoA carboxylase compare
RR42_RS02030 +0.5 1.0 membrane protein compare
RR42_RS27705 +0.5 1.1 NAD-dependent deacetylase compare
RR42_RS09855 +0.5 2.0 hypothetical protein compare
RR42_RS26540 +0.5 0.7 3-phosphoglycerate dehydrogenase compare
RR42_RS05780 +0.5 1.7 hypothetical protein compare
RR42_RS32105 +0.5 1.7 hypothetical protein compare
RR42_RS35320 +0.5 1.7 membrane protein compare
RR42_RS09360 +0.5 1.3 alpha/beta hydrolase compare
RR42_RS10540 +0.5 1.0 acetyl-CoA acetyltransferase compare
RR42_RS27060 +0.5 0.6 cation transporter compare
RR42_RS34510 +0.5 1.9 acetyltransferase compare
RR42_RS31135 +0.5 1.1 hypothetical protein compare
RR42_RS13760 +0.5 1.5 copper resistance protein CopQ compare
RR42_RS01095 +0.5 1.0 membrane protein compare
RR42_RS23445 +0.5 1.9 LacI family transcriptional regulator compare
RR42_RS28840 +0.5 2.7 hypothetical protein compare
RR42_RS25455 +0.5 0.7 acetyl-CoA acetyltransferase compare
RR42_RS29000 +0.5 1.9 Crp/Fnr family transcriptional regulator compare
RR42_RS02290 +0.5 2.1 multidrug ABC transporter ATP-binding protein compare
RR42_RS36445 +0.5 1.9 acetyl-CoA acetyltransferase compare
RR42_RS16495 +0.5 0.9 branched-chain amino acid aminotransferase compare
RR42_RS30085 +0.5 1.4 hypothetical protein compare
RR42_RS27850 +0.5 1.5 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
RR42_RS21305 +0.4 1.5 membrane protein compare
RR42_RS20630 +0.4 2.2 transcriptional regulator compare
RR42_RS26725 +0.4 1.6 diguanylate cyclase compare
RR42_RS25115 +0.4 1.6 IclR family transcriptional regulator compare
RR42_RS14760 +0.4 1.6 molybdenum cofactor biosynthesis protein MogA compare
RR42_RS14705 +0.4 2.6 multidrug transporter compare
RR42_RS02545 +0.4 1.1 nitrate ABC transporter ATP-binding protein compare
RR42_RS00390 +0.4 1.4 amidohydrolase compare
RR42_RS12870 +0.4 1.7 membrane protein compare
RR42_RS35755 +0.4 2.0 flagellar biosynthesis protein FlhG compare
RR42_RS27290 +0.4 1.2 hypothetical protein compare
RR42_RS22040 +0.4 1.5 Hcp family T6SS protein CtsH1 compare
RR42_RS05085 +0.4 1.8 2-aminomuconate deaminase compare
RR42_RS30440 +0.4 1.8 cation:proton antiporter compare
RR42_RS04175 +0.4 2.6 hypothetical protein compare
RR42_RS01210 +0.4 1.3 n-acetyl-gamma-glutamyl-phosphate reductase compare
RR42_RS06315 +0.4 1.1 RNA methyltransferase compare
RR42_RS08880 +0.4 1.1 hypothetical protein compare
RR42_RS27790 +0.4 0.7 LuxR family transcriptional regulator compare
RR42_RS35725 +0.4 0.9 flagellar biosynthesis protein FlgB compare
RR42_RS04135 +0.4 0.8 pilus assembly protein CpaB compare
RR42_RS29450 +0.4 1.4 ABC transporter compare
RR42_RS35475 +0.4 2.6 thiosulfate sulfurtransferase compare
RR42_RS15315 +0.4 2.9 MFS transporter compare
RR42_RS04375 +0.4 1.9 magnesium transporter compare
RR42_RS12520 +0.4 1.4 molybdenum cofactor biosynthesis protein MoaE compare
RR42_RS05115 +0.4 1.0 LysR family transcriptional regulator compare
RR42_RS13465 +0.4 1.3 phosphate transporter permease subunit PstC compare
RR42_RS08590 +0.4 0.8 baseplate assembly protein compare
RR42_RS24515 +0.4 1.2 hypothetical protein compare
RR42_RS14925 +0.4 2.2 hypothetical protein compare
RR42_RS10420 +0.4 1.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in carbon source experiments

For carbon source L-Alanine across organisms