Experiment set2IT077 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without Cyanocobalamin

200 most important genes:

  gene name fitness t score description  
BBR_RS18735 -7.4 -19.1 hypothetical protein compare
BBR_RS16750 -7.1 -6.9 ParA family protein compare
BBR_RS13030 -7.0 -4.8 cell division ATP-binding protein FtsE compare
BBR_RS10445 -6.9 -13.2 HlyC/CorC family transporter compare
BBR_RS11020 -6.8 -12.2 ACT domain-containing protein compare
BBR_RS18570 -6.5 -10.9 phosphoserine transaminase compare
BBR_RS19240 -6.5 -18.2 LacI family transcriptional regulator compare
BBR_RS13040 -6.4 -6.3 CHAP domain-containing protein compare
BBR_RS11025 -6.4 -20.5 aspartate-semialdehyde dehydrogenase compare
BBR_RS11015 -6.4 -14.3 aspartate kinase compare
BBR_RS18955 -6.3 -14.0 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS10660 -6.2 -28.6 esterase compare
BBR_RS14215 -6.2 -7.2 peptidase compare
BBR_RS19700 -6.1 -32.5 ATP-dependent chaperone ClpB compare
BBR_RS17990 -6.1 -13.0 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS17365 -6.0 -5.9 ABC transporter permease compare
BBR_RS19535 -6.0 -14.9 homoserine kinase compare
BBR_RS18690 -5.9 -5.8 diacylglycerol kinase compare
BBR_RS16970 -5.9 -5.7 phosphoglycerate dehydrogenase compare
BBR_RS19475 -5.9 -22.4 AEC family transporter compare
BBR_RS14210 -5.8 -3.9 hypothetical protein compare
BBR_RS17615 -5.8 -10.4 phosphoserine phosphatase SerB compare
BBR_RS11205 -5.7 -3.9 HPr family phosphocarrier protein compare
BBR_RS10900 -5.5 -3.8 molecular chaperone DnaK compare
BBR_RS12235 -5.5 -1.7 hypothetical protein compare
BBR_RS17375 -5.4 -9.1 amino acid ABC transporter ATP-binding protein compare
BBR_RS15170 -5.3 -7.3 HlyC/CorC family transporter compare
BBR_RS11210 -5.2 -3.6 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS18695 -5.2 -5.0 PRD domain-containing protein compare
BBR_RS16820 -5.2 -4.8 RNA polymerase sigma factor RpoE compare
BBR_RS11505 -5.1 -22.6 TetR/AcrR family transcriptional regulator compare
BBR_RS19740 -5.1 -25.1 DUF2142 domain-containing protein compare
BBR_RS11720 -5.1 -9.6 DUF2469 domain-containing protein compare
BBR_RS12460 -5.1 -10.3 LacI family DNA-binding transcriptional regulator compare
BBR_RS17370 -4.8 -10.1 ABC transporter substrate-binding protein compare
BBR_RS13035 -4.8 -3.9 ABC transporter permease compare
BBR_RS10625 -4.8 -2.9 FHA domain-containing protein compare
BBR_RS19945 -4.8 -12.3 MarR family transcriptional regulator compare
BBR_RS14365 -4.8 -9.8 hypothetical protein compare
BBR_RS14070 -4.8 -4.6 threonine synthase compare
BBR_RS16610 -4.7 -5.6 hypothetical protein compare
BBR_RS15675 -4.7 -10.0 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS20430 -4.7 -6.4 hypothetical protein compare
BBR_RS15680 -4.7 -8.9 succinate--CoA ligase subunit alpha compare
BBR_RS16670 -4.6 -4.5 hypothetical protein compare
BBR_RS18745 -4.5 -2.0 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS15085 -4.5 -2.5 3-dehydroquinate synthase compare
BBR_RS16155 -4.5 -12.0 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS17460 -4.5 -11.5 TPM domain-containing protein compare
BBR_RS19760 -4.4 -3.5 polysaccharide ABC transporter ATPase compare
BBR_RS15070 -4.4 -3.0 endolytic transglycosylase MltG compare
BBR_RS18700 -4.3 -10.5 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS16600 -4.3 -13.5 aconitate hydratase AcnA compare
BBR_RS19190 -4.3 -8.7 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS11595 -4.3 -7.0 50S ribosomal protein L9 compare
BBR_RS12905 -4.3 -4.0 galactose-1-phosphate uridylyltransferase compare
BBR_RS12545 -4.3 -2.9 DUF4012 domain-containing protein compare
BBR_RS13070 -4.2 -1.9 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS19120 -4.2 -14.0 helicase compare
BBR_RS13820 -4.2 -1.3 ATP-binding protein compare
BBR_RS16965 -4.2 -2.9 ATP-dependent DNA helicase compare
BBR_RS16675 -4.1 -4.9 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS18725 -4.1 -5.1 ribonuclease HI compare
BBR_RS12900 -4.1 -3.7 DeoR/GlpR transcriptional regulator compare
BBR_RS10620 -4.1 -5.6 phosphoprotein phosphatase compare
BBR_RS15080 -4.1 -2.8 chorismate synthase compare
BBR_RS19265 -4.0 -14.9 pyrrolidone-carboxylate peptidase compare
BBR_RS18565 -4.0 -2.9 CHAP domain-containing protein compare
BBR_RS16605 -4.0 -8.8 hypothetical protein compare
BBR_RS12760 -3.9 -11.0 hypothetical protein compare
BBR_RS15520 -3.9 -2.7 shikimate 5-dehydrogenase compare
BBR_RS19355 -3.8 -2.7 tRNA-Gly compare
BBR_RS13125 -3.8 -1.5 ABC transporter permease compare
BBR_RS13740 -3.7 -5.7 DUF3052 domain-containing protein compare
BBR_RS19555 -3.7 -26.5 diaminopimelate decarboxylase compare
BBR_RS13700 -3.7 -12.6 diaminopimelate epimerase compare
BBR_RS17135 -3.7 -3.1 RluA family pseudouridine synthase compare
BBR_RS15180 -3.7 -10.3 long-chain fatty acid--CoA ligase compare
BBR_RS17290 -3.6 -9.9 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS12995 -3.6 -8.1 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS11515 -3.6 -18.9 ammonium transporter compare
BBR_RS17905 -3.6 -25.2 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS14370 -3.6 -2.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS15360 -3.6 -4.4 hypothetical protein compare
BBR_RS19540 -3.5 -2.4 homoserine dehydrogenase compare
BBR_RS13735 -3.5 -1.6 Lon protease compare
BBR_RS20465 -3.5 -13.4 chromosome partitioning protein compare
BBR_RS16220 -3.5 -1.1 DNA cytosine methyltransferase compare
BBR_RS15805 -3.4 -8.2 prolipoprotein diacylglyceryl transferase compare
BBR_RS10910 -3.4 -15.1 molecular chaperone DnaJ compare
BBR_RS14625 -3.4 -8.8 pyrroline-5-carboxylate reductase compare
BBR_RS19470 -3.4 -19.2 succinyl-diaminopimelate desuccinylase compare
BBR_RS19755 -3.3 -15.6 glycosyl transferase compare
BBR_RS16430 -3.3 -3.2 nucleotide pyrophosphatase compare
BBR_RS20920 -3.2 -4.5 hypothetical protein compare
BBR_RS18175 -3.2 -1.4 GTP cyclohydrolase I FolE compare
BBR_RS19165 -3.2 -3.6 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS14205 -3.2 -3.8 hypothetical protein compare
BBR_RS12660 -3.1 -10.5 EpsG family protein compare
BBR_RS11675 -3.1 -2.4 hypothetical protein compare
BBR_RS15355 -3.1 -4.6 DUF3800 domain-containing protein compare
BBR_RS19905 -3.0 -1.3 methionine--tRNA ligase compare
BBR_RS12635 -3.0 -16.7 polysaccharide biosynthesis protein compare
BBR_RS16240 -3.0 -5.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS20450 -2.9 -16.6 murein biosynthesis integral membrane protein MurJ compare
BBR_RS15090 -2.9 -1.3 type II 3-dehydroquinate dehydratase compare
BBR_RS14330 -2.9 -2.0 glycogen debranching enzyme GlgX compare
BBR_RS14540 -2.8 -5.9 Na+/H+ antiporter NhaA compare
BBR_RS19160 -2.8 -1.7 phosphate ABC transporter permease subunit PstC compare
BBR_RS17360 -2.8 -5.2 amino acid ABC transporter permease compare
BBR_RS12810 -2.7 -10.8 hypothetical protein compare
BBR_RS20775 -2.7 -1.6 DUF4230 domain-containing protein compare
BBR_RS11500 -2.7 -12.9 glycosyltransferase family 2 protein compare
BBR_RS16540 -2.7 -4.5 XRE family transcriptional regulator compare
BBR_RS14655 -2.7 -6.4 AraC family transcriptional regulator compare
BBR_RS19390 -2.7 -1.8 hypothetical protein compare
BBR_RS12640 -2.7 -13.6 glycosyl transferase compare
BBR_RS15915 -2.7 -1.2 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS10720 -2.6 -13.1 PDZ domain-containing protein compare
BBR_RS19645 -2.6 -11.3 RNA degradosome polyphosphate kinase compare
BBR_RS11680 -2.5 -12.7 23S rRNA methyltransferase compare
BBR_RS17640 -2.5 -3.8 DNA-directed RNA polymerase subunit omega compare
BBR_RS15440 -2.5 -3.0 orotidine-5'-phosphate decarboxylase compare
BBR_RS12855 -2.5 -4.3 glycine cleavage system protein H compare
BBR_RS19125 -2.5 -13.3 hypothetical protein compare
BBR_RS12705 -2.5 -12.9 hypothetical protein compare
BBR_RS16975 -2.5 -4.8 transcriptional repressor NrdR compare
BBR_RS16425 -2.5 -3.9 DUF3071 domain-containing protein compare
BBR_RS14265 -2.4 -5.9 Solute-binding protein of ABC transporter system for metals compare
BBR_RS15860 -2.4 -1.0 DUF2316 domain-containing protein compare
BBR_RS18180 -2.4 -9.6 ATP-dependent zinc metalloprotease FtsH compare
BBR_RS12770 -2.4 -4.6 hypothetical protein compare
BBR_RS13835 -2.4 -9.0 FAD-dependent oxidoreductase compare
BBR_RS20935 -2.4 -3.1 hypothetical protein compare
BBR_RS12710 -2.3 -5.0 hypothetical protein compare
BBR_RS14240 -2.3 -6.7 1,4-alpha-glucan branching protein GlgB compare
BBR_RS16940 -2.3 -3.3 hypothetical protein compare
BBR_RS19370 -2.3 -4.6 type I polyketide synthase compare
BBR_RS11770 -2.3 -4.4 chorismate mutase compare
BBR_RS12630 -2.3 -14.3 glycosyltransferase family 1 protein compare
BBR_RS13750 -2.3 -3.1 DivIVA domain-containing protein compare
BBR_RS12980 -2.3 -13.0 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS20420 -2.2 -10.4 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS19155 -2.2 -7.5 phosphate ABC transporter, permease protein PstA compare
BBR_RS12775 -2.1 -4.3 hypothetical protein compare
BBR_RS14660 -2.1 -2.5 transcriptional regulator compare
BBR_RS11220 -2.1 -12.8 YbhB/YbcL family Raf kinase inhibitor-like protein compare
BBR_RS11355 -2.1 -8.3 hypothetical protein compare
BBR_RS12370 -2.1 -1.1 cell division protein compare
BBR_RS15755 -2.0 -1.7 hypothetical protein compare
BBR_RS18550 -2.0 -9.3 universal stress protein compare
BBR_RS14190 -2.0 -8.0 transcriptional regulator compare
BBR_RS10740 -2.0 -1.8 tRNA-Gly compare
BBR_RS13405 -2.0 -3.1 hypothetical protein compare
BBR_RS19260 -1.9 -14.1 hypothetical protein compare
BBR_RS12310 -1.9 -2.5 signal recognition particle protein compare
BBR_RS14260 -1.9 -1.2 ABC transporter ATP-binding protein compare
BBR_RS15300 -1.9 -3.4 peroxiredoxin compare
BBR_RS11540 -1.9 -2.4 DUF1727 domain-containing protein compare
BBR_RS12175 -1.9 -7.2 TetR/AcrR family transcriptional regulator compare
BBR_RS10755 -1.9 -5.0 adenylosuccinate synthase compare
BBR_RS12645 -1.8 -6.2 acyltransferase compare
BBR_RS16845 -1.8 -1.6 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS16905 -1.8 -3.6 hypothetical protein compare
BBR_RS12700 -1.8 -6.9 hypothetical protein compare
BBR_RS12975 -1.8 -9.9 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS15845 -1.8 -1.1 hypothetical protein compare
BBR_RS19350 -1.8 -3.7 tRNA-Val compare
BBR_RS17720 -1.8 -10.0 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS14130 -1.8 -1.6 septum formation initiator family protein compare
BBR_RS14665 -1.7 -7.1 MATE family efflux transporter compare
BBR_RS18375 -1.7 -9.1 ATP-dependent helicase compare
BBR_RS12655 -1.7 -6.8 glycosyltransferase family 2 protein compare
BBR_RS17495 -1.7 -8.7 DUF58 domain-containing protein compare
BBR_RS19325 -1.7 -4.1 hypothetical protein compare
BBR_RS20690 -1.7 -2.6 hypothetical protein compare
BBR_RS16985 -1.7 -4.0 transcriptional repressor LexA compare
BBR_RS15130 -1.7 -1.2 metal-sulfur cluster assembly factor compare
BBR_RS14075 -1.7 -4.1 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS11715 -1.7 -11.8 N-acetyltransferase compare
BBR_RS16960 -1.7 -2.7 transcriptional regulator MraZ compare
BBR_RS19095 -1.6 -7.9 magnesium transporter compare
BBR_RS20725 -1.6 -4.6 hypothetical protein compare
BBR_RS12665 -1.6 -9.8 acyltransferase compare
BBR_RS13300 -1.6 -1.2 5-(carboxyamino)imidazole ribonucleotide synthase compare
BBR_RS20460 -1.6 -3.9 chromosome partitioning protein ParB compare
BBR_RS10555 -1.6 -1.5 DUF3073 domain-containing protein compare
BBR_RS20910 -1.6 -1.4 DUF1829 domain-containing protein compare
BBR_RS16080 -1.6 -2.1 DUF1287 domain-containing protein compare
BBR_RS13805 -1.6 -1.8 hypothetical protein compare
BBR_RS16250 -1.6 -2.5 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS18050 -1.6 -2.6 threonylcarbamoyl-AMP synthase compare
BBR_RS20440 -1.6 -3.4 NUDIX hydrolase compare
BBR_RS18215 -1.6 -5.5 AI-2E family transporter compare
BBR_RS17500 -1.6 -8.2 hypothetical protein compare
BBR_RS14230 -1.6 -4.1 HAMP domain-containing histidine kinase compare
BBR_RS13450 -1.6 -1.9 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BBR_RS19745 -1.5 -10.9 LTA synthase family protein compare
BBR_RS12650 -1.5 -8.8 polysaccharide pyruvyl transferase family protein compare
BBR_RS13830 -1.5 -0.8 DUF4191 domain-containing protein compare


Specific Phenotypes

None in this experiment

For Bifidobacterium breve UCC2003 in nutrient dropout experiments

For nutrient dropout no Cyanocobalamin across organisms