Experiment set2IT077 for Burkholderia phytofirmans PsJN

Compare to:

Gly-Glu carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS02610 -7.7 -5.3 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS09500 -7.6 -5.2 glucose-6-phosphate isomerase compare
BPHYT_RS17675 -7.2 -2.6 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS06190 -6.7 -4.6 heptosyltransferase compare
BPHYT_RS15710 -5.7 -3.6 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS14845 -5.6 -3.8 cysteine synthase compare
BPHYT_RS14895 -5.5 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS17690 -5.4 -15.3 imidazole glycerol phosphate synthase compare
BPHYT_RS06555 -5.3 -10.6 ketol-acid reductoisomerase compare
BPHYT_RS04285 -5.3 -3.2 rhamnosyltransferase compare
BPHYT_RS08955 -5.2 -6.2 homoserine dehydrogenase compare
BPHYT_RS06545 -5.2 -13.4 acetolactate synthase compare
BPHYT_RS17890 -5.2 -3.2 shikimate kinase compare
BPHYT_RS08850 -5.1 -3.5 transcriptional regulator compare
BPHYT_RS06175 -5.0 -6.8 LPS biosynthesis compare
BPHYT_RS02590 -5.0 -7.3 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS16905 -4.9 -7.9 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS33875 -4.8 -8.8 tryptophan synthase subunit alpha compare
BPHYT_RS04955 -4.8 -3.0 methionyl-tRNA synthetase compare
BPHYT_RS14190 -4.7 -11.8 carbamoyl phosphate synthase large subunit compare
BPHYT_RS13705 -4.6 -6.3 chorismate synthase compare
BPHYT_RS16835 -4.6 -6.3 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS15920 -4.6 -13.7 argininosuccinate synthase compare
BPHYT_RS08960 -4.6 -2.8 threonine synthase compare
BPHYT_RS16245 -4.6 -7.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS08245 -4.5 -9.1 anti-sigma factor compare
BPHYT_RS16270 -4.5 -4.4 phosphoglycerate kinase compare
BPHYT_RS17885 -4.5 -8.5 3-dehydroquinate synthase compare
BPHYT_RS06610 -4.5 -2.2 triosephosphate isomerase compare
BPHYT_RS33835 -4.5 -11.4 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS17400 -4.5 -8.5 anthranilate phosphoribosyltransferase compare
BPHYT_RS33915 -4.4 -9.7 isopropylmalate isomerase compare
BPHYT_RS18320 -4.3 -11.1 orotate phosphoribosyltransferase compare
BPHYT_RS06900 -4.3 -6.7 aspartate aminotransferase compare
BPHYT_RS15915 -4.3 -15.6 ornithine carbamoyltransferase compare
BPHYT_RS17390 -4.2 -16.5 anthranilate synthase subunit I compare
BPHYT_RS06405 -4.1 -11.2 phosphoribosylamine--glycine ligase compare
BPHYT_RS08565 -4.1 -2.1 dihydroorotate dehydrogenase compare
BPHYT_RS01595 -4.1 -12.9 homoserine O-acetyltransferase compare
BPHYT_RS04370 -4.1 -2.6 glycosyl transferase compare
BPHYT_RS17685 -4.0 -7.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS33900 -4.0 -10.8 3-isopropylmalate dehydrogenase compare
BPHYT_RS04725 -4.0 -9.3 sulfite reductase compare
BPHYT_RS17670 -4.0 -5.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33840 -3.9 -9.7 amidophosphoribosyltransferase compare
BPHYT_RS33880 -3.7 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS16255 -3.6 -5.9 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS04385 -3.6 -4.8 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS02865 -3.5 -4.4 hypothetical protein compare
BPHYT_RS17680 -3.5 -5.4 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS35885 -3.4 -5.0 hypothetical protein compare
BPHYT_RS09515 -3.4 -5.9 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS12845 -3.4 -17.4 ATPase compare
BPHYT_RS17405 -3.4 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS03640 -3.4 -5.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS16840 -3.3 -3.2 transketolase compare
BPHYT_RS14195 -3.3 -3.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS14910 -3.2 -9.5 chorismate mutase compare
BPHYT_RS04720 -3.2 -6.2 transcriptional regulator compare
BPHYT_RS04740 -3.2 -9.7 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS12530 -3.2 -5.3 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS09160 -3.2 -8.5 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS17395 -3.2 -3.2 anthranilate synthase subunit II compare
BPHYT_RS17715 -3.2 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS33645 -3.2 -6.4 homoserine kinase compare
BPHYT_RS04290 -3.1 -2.9 glycosyl transferase family 2 compare
BPHYT_RS16675 -3.1 -3.5 dihydroorotase compare
BPHYT_RS14855 -3.0 -2.0 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS19535 -3.0 -9.4 XRE family transcriptional regulator compare
BPHYT_RS33535 -2.6 -18.2 RNA polymerase sigma factor RpoD compare
BPHYT_RS28705 -2.5 -2.2 IclR family transcriptional regulator compare
BPHYT_RS17700 -2.4 -3.8 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS19320 -2.4 -8.4 glycine cleavage system protein T compare
BPHYT_RS14400 -2.3 -2.3 anti-sigma factor compare
BPHYT_RS22730 -2.3 -4.9 serine/threonine kinase compare
BPHYT_RS11685 -2.3 -1.8 phasin family protein compare
BPHYT_RS20790 -2.2 -2.3 TetR family transcriptional regulator compare
BPHYT_RS26400 -2.2 -2.3 sodium:solute symporter compare
BPHYT_RS18910 -2.2 -2.6 FlgN compare
BPHYT_RS03570 -2.2 -7.4 heat-inducible transcription repressor HrcA compare
BPHYT_RS16710 -2.2 -2.0 LysR family transcriptional regulator compare
BPHYT_RS08030 -2.1 -4.1 transposase compare
BPHYT_RS03725 -2.1 -2.2 serine hydroxymethyltransferase compare
BPHYT_RS04730 -2.1 -3.9 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS19540 -2.1 -10.0 sensor histidine kinase compare
BPHYT_RS05285 -2.1 -2.0 hypothetical protein compare
BPHYT_RS17380 -2.0 -10.1 ribulose-phosphate 3-epimerase compare
BPHYT_RS25135 -2.0 -2.8 hypothetical protein compare
BPHYT_RS04745 -2.0 -6.6 sulfate adenylyltransferase compare
BPHYT_RS19330 -1.9 -8.6 glycine cleavage system P protein (EC 1.4.4.2) (from data) conserved
BPHYT_RS01590 -1.9 -6.2 methionine biosynthesis protein MetW compare
BPHYT_RS14865 -1.9 -5.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS23840 -1.9 -6.3 methyltransferase compare
BPHYT_RS31815 -1.9 -4.5 hypothetical protein compare
BPHYT_RS15670 -1.9 -5.4 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS21700 -1.8 -3.0 phosphotransacetylase compare
BPHYT_RS30490 -1.8 -1.1 2-haloalkanoic acid dehalogenase compare
BPHYT_RS16345 -1.8 -5.5 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS36220 -1.8 -1.4 hypothetical protein compare
BPHYT_RS16085 -1.8 -4.7 DeoR faimly transcriptional regulator compare
BPHYT_RS12985 -1.8 -2.6 amino acid acetyltransferase compare
BPHYT_RS18340 -1.7 -2.0 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS06195 -1.7 -2.8 membrane protein compare
BPHYT_RS09315 -1.7 -1.3 chemotaxis protein CheY compare
BPHYT_RS18705 -1.7 -1.6 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS03400 -1.7 -1.1 ATP-dependent DNA helicase RecG compare
BPHYT_RS33905 -1.7 -1.0 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS21675 -1.7 -4.1 FAD-dependent oxidoreductase compare
BPHYT_RS14900 -1.6 -2.7 prephenate dehydrogenase compare
BPHYT_RS04965 -1.6 -6.2 ATP-binding protein compare
BPHYT_RS02135 -1.6 -2.5 glyoxylate reductase compare
BPHYT_RS19325 -1.6 -1.8 glycine cleavage system H protein compare
BPHYT_RS16975 -1.6 -5.2 shikimate 5-dehydrogenase compare
BPHYT_RS33540 -1.5 -1.8 hypothetical protein compare
BPHYT_RS34445 -1.5 -3.3 GntR family transcriptional regulator compare
BPHYT_RS23210 -1.5 -1.3 MFS transporter compare
BPHYT_RS33865 -1.5 -6.6 tryptophan synthase alpha chain compare
BPHYT_RS02650 -1.5 -1.8 membrane protein compare
BPHYT_RS01095 -1.5 -1.4 hypothetical protein compare
BPHYT_RS03280 -1.4 -1.5 mannose-1-phosphate guanylyltransferase compare
BPHYT_RS16340 -1.4 -5.2 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS04885 -1.4 -1.7 threonine-phosphate decarboxylase compare
BPHYT_RS11325 -1.4 -4.9 voltage-gated chloride channel protein ClcB compare
BPHYT_RS11310 -1.4 -1.6 LysR family transcriptional regulator compare
BPHYT_RS12615 -1.4 -1.6 dihydrodipicolinate synthase compare
BPHYT_RS06350 -1.3 -2.5 chemotaxis protein CheY compare
BPHYT_RS11285 -1.3 -3.3 LacI family transcription regulator compare
BPHYT_RS13645 -1.3 -9.3 threonine--tRNA ligase compare
BPHYT_RS14945 -1.3 -2.9 phosphoglycolate phosphatase compare
BPHYT_RS32155 -1.3 -3.6 type IV secretion system protein VirB11 compare
BPHYT_RS25970 -1.3 -1.2 urea amidolyase compare
BPHYT_RS13220 -1.3 -5.7 phosphomethylpyrimidine synthase compare
BPHYT_RS19340 -1.3 -6.9 L-serine ammonia-lyase (EC 4.3.1.17) (from data) compare
BPHYT_RS17905 -1.2 -2.0 fimbrial assembly family protein compare
BPHYT_RS09145 -1.2 -5.0 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS03255 -1.2 -2.7 glutathione S-transferase compare
BPHYT_RS05010 -1.2 -3.7 RpiR family transcriptional regulator compare
BPHYT_RS31150 -1.2 -3.9 transcriptional regulator compare
BPHYT_RS32200 -1.2 -2.3 lytic transglycosylase compare
BPHYT_RS23910 -1.2 -1.9 phosphoribosyl-dephospho-CoA transferase compare
BPHYT_RS33920 -1.2 -6.1 type II citrate synthase compare
BPHYT_RS16080 -1.2 -4.3 xylulokinase compare
BPHYT_RS03535 -1.2 -3.3 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS16740 -1.2 -5.2 transcriptional regulator compare
BPHYT_RS16175 -1.2 -2.0 hemolysin D compare
BPHYT_RS04865 -1.2 -2.8 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BPHYT_RS23460 -1.1 -1.0 AraC family transcriptional regulator compare
BPHYT_RS26675 -1.1 -2.3 precorrin-6Y C5,15-methyltransferase compare
BPHYT_RS23270 -1.1 -1.5 enoyl-CoA hydratase compare
BPHYT_RS03215 -1.1 -2.1 TetR family transcriptional regulator compare
BPHYT_RS22060 -1.1 -9.1 amino acid transporter compare
BPHYT_RS16575 -1.1 -7.8 Xaa-Pro aminopeptidase compare
BPHYT_RS17155 -1.1 -5.9 peptidase A24 compare
BPHYT_RS13890 -1.1 -3.5 RpiR family transcriptional regulator compare
BPHYT_RS29810 -1.1 -1.4 hexapeptide transferase compare
BPHYT_RS11795 -1.1 -1.2 membrane protein compare
BPHYT_RS30365 -1.1 -0.9 beta-lactamase compare
BPHYT_RS14395 -1.1 -4.6 sugar dehydratase compare
BPHYT_RS19335 -1.1 -3.0 hypothetical protein compare
BPHYT_RS09545 -1.0 -2.1 peptide methionine sulfoxide reductase compare
BPHYT_RS13200 -1.0 -1.4 molybdopterin binding oxidoreductase compare
BPHYT_RS25870 -1.0 -1.0 type III secretion system ATPase compare
BPHYT_RS30160 -1.0 -2.4 AraC family transcriptional regulator compare
BPHYT_RS18615 -1.0 -3.9 5-formyltetrahydrofolate cyclo-ligase compare
BPHYT_RS22930 -1.0 -1.6 type II secretion system protein compare
BPHYT_RS34545 -1.0 -1.4 transcriptional regulator compare
BPHYT_RS15620 -1.0 -3.6 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS02690 -1.0 -6.3 protoheme IX farnesyltransferase compare
BPHYT_RS15470 -1.0 -4.0 tRNA (guanine-N(7)-)-methyltransferase compare
BPHYT_RS13350 -1.0 -4.0 shikimate kinase compare
BPHYT_RS36145 -1.0 -1.6 hypothetical protein compare
BPHYT_RS17725 -1.0 -5.1 BolA family transcriptional regulator compare
BPHYT_RS24540 -1.0 -3.1 DMSO reductase compare
BPHYT_RS27865 -1.0 -2.2 ATPase compare
BPHYT_RS17620 -1.0 -5.6 cytochrome C compare
BPHYT_RS22360 -1.0 -2.5 response regulator receiver compare
BPHYT_RS10985 -1.0 -2.8 MFS transporter compare
BPHYT_RS36360 -1.0 -1.6 hypothetical protein compare
BPHYT_RS02860 -1.0 -1.0 membrane protein compare
BPHYT_RS03235 -1.0 -1.8 enoyl-CoA hydratase compare
BPHYT_RS12815 -0.9 -3.5 IclR family transcriptional regulator compare
BPHYT_RS07565 -0.9 -5.5 urocanate hydratase compare
BPHYT_RS08125 -0.9 -6.2 ATPase compare
BPHYT_RS33185 -0.9 -4.5 methyltransferase type 11 compare
BPHYT_RS24840 -0.9 -4.4 cobalamin biosynthesis protein CobW compare
BPHYT_RS28505 -0.9 -2.2 5-deoxyglucuronate isomerase compare
BPHYT_RS06375 -0.9 -2.9 ribonuclease compare
BPHYT_RS34085 -0.9 -1.7 polyamine ABC transporter permease compare
BPHYT_RS17520 -0.9 -3.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS28040 -0.9 -2.2 acyl-CoA dehydrogenase compare
BPHYT_RS28965 -0.9 -1.7 hypothetical protein compare
BPHYT_RS33655 -0.9 -3.0 MarR family transcriptional regulator compare
BPHYT_RS04630 -0.9 -2.5 amino acid ABC transporter permease compare
BPHYT_RS17165 -0.9 -2.8 cell division protein ZapD compare
BPHYT_RS33610 -0.9 -1.0 DNA polymerase I compare
BPHYT_RS15800 -0.9 -2.9 GntR family transcriptional regulator compare
BPHYT_RS01240 -0.9 -1.8 hypothetical protein compare
BPHYT_RS33990 -0.9 -0.8 ATPase compare
BPHYT_RS06400 -0.9 -4.4 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS30825 -0.9 -1.8 extradiol dioxygenase compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source Gly-Glu in Burkholderia phytofirmans PsJN

For carbon source Gly-Glu across organisms