Experiment set2IT076 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic, grinding recovery; Green bean

200 most important genes:

  gene name fitness t score description  
Psyr_1196 -6.0 -2.6 type III secretion protein HrpD compare
Psyr_4581 -5.9 -2.6 anthranilate synthase, component II compare
Psyr_1998 -5.3 -2.7 lipoprotein, putative compare
Psyr_4580 -5.2 -3.6 anthranilate phosphoribosyltransferase compare
Psyr_4609 -4.8 -13.0 anthranilate synthase, component I compare
Psyr_1985 -4.7 -3.3 3-isopropylmalate dehydrogenase compare
Psyr_1733 -4.7 -2.1 Peptidyl-prolyl cis-trans isomerase, cyclophilin type compare
Psyr_0473 -4.7 -6.4 Methionine biosynthesis MetW compare
Psyr_5072 -4.6 -1.2 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_2612 -4.6 -2.2 syrP protein, putative compare
Psyr_1946 -4.6 -2.3 diaminobutyrate aminotransferase apoenzyme compare
Psyr_4270 -4.6 -8.7 serine hydroxymethyltransferase compare
Psyr_4893 -4.4 -1.6 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_1614 -4.3 -3.0 lipid A biosynthesis acyltransferase compare
Psyr_2264 -4.3 -2.1 Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal compare
Psyr_0378 -4.3 -2.9 Glycosyl transferase, family 2 compare
Psyr_3808 -4.2 -1.5 hypothetical protein compare
Psyr_4407 -4.2 -2.9 phosphoribosylamine--glycine ligase compare
Psyr_0954 -4.2 -3.1 Protein of unknown function UPF0153 compare
Psyr_0034 -4.1 -2.8 tryptophan synthase, beta chain compare
Psyr_1613 -4.0 -2.8 septum site-determining protein MinC compare
Psyr_3601 -4.0 -1.4 conserved hypothetical protein compare
Psyr_4684 -3.9 -2.6 biotin synthesis protein BioC compare
Psyr_0704 -3.9 -9.9 glutamate 5-kinase compare
Psyr_0474 -3.9 -10.4 homoserine O-acetyltransferase compare
Psyr_3934 -3.9 -1.3 Short-chain dehydrogenase/reductase SDR compare
Psyr_0167 -3.8 -4.3 hypothetical protein compare
Psyr_0531 -3.8 -2.3 LmbE-like protein compare
Psyr_3854 -3.8 -0.9 OmpA/MotB compare
Psyr_2733 -3.8 -3.5 Short-chain dehydrogenase/reductase SDR compare
Psyr_3755 -3.7 -1.5 conserved hypothetical protein compare
Psyr_1408 -3.7 -2.4 Holliday junction endonuclease RuvC compare
Psyr_1668 -3.6 -7.6 amidophosphoribosyltransferase compare
Psyr_3008 -3.6 -5.4 Undecaprenyl-diphosphatase compare
Psyr_1983 -3.6 -5.5 3-isopropylmalate dehydratase, large subunit compare
Psyr_3287 -3.6 -2.4 DNA topoisomerase I compare
Psyr_0827 -3.6 -3.7 pantothenate synthetase compare
Psyr_1663 -3.5 -4.4 phosphoribosylanthranilate isomerase compare
Psyr_2562 -3.5 -2.1 hypothetical protein compare
Psyr_1984 -3.5 -2.5 3-isopropylmalate dehydratase, small subunit compare
Psyr_1350 -3.5 -4.4 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_1056 -3.5 -4.8 Poly(beta-D-mannuronate) lyase compare
Psyr_2501 -3.5 -2.7 Hemerythrin compare
Psyr_4015 -3.5 -2.3 conserved domain protein compare
Psyr_0469 -3.4 -9.2 dihydroxyacid dehydratase compare
Psyr_1269 -3.4 -3.3 phosphoribosylformylglycinamidine synthase compare
Psyr_1588 -3.4 -2.3 Putative exonuclease, RdgC compare
Psyr_0557 -3.4 -6.3 phosphoserine phosphatase compare
Psyr_0219 -3.4 -11.2 phosphomannomutase compare
Psyr_0846 -3.3 -12.2 acetolactate synthase, large subunit compare
Psyr_3837 -3.3 -2.8 conserved hypothetical protein compare
Psyr_0529 -3.3 -5.4 Glycosyl transferase, group 1 compare
Psyr_0377 -3.3 -9.3 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_1669 -3.2 -7.6 O-succinylhomoserine sulfhydrylase compare
Psyr_3676 -3.2 -4.6 adenosylcobyric acid synthase (glutamine-hydrolysing) compare
Psyr_3458 -3.2 -1.5 Flagellar hook-basal body complex protein FliE compare
Psyr_1748 -3.2 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_2613 -3.2 -7.0 Cyclic peptide transporter compare
Psyr_2619 -3.1 -3.4 diaminobutyrate aminotransferase apoenzyme compare
Psyr_1411 -3.1 -3.2 4-hydroxybenzoyl-CoA thioesterase compare
Psyr_4897 -3.1 -3.6 imidazoleglycerol-phosphate dehydratase compare
Psyr_3028 -3.0 -2.2 Protein of unknown function DUF28 compare
Psyr_4852 -3.0 -7.0 D-3-phosphoglycerate dehydrogenase compare
Psyr_3552 -3.0 -3.3 Divalent cation transporter compare
Psyr_0915 -2.9 -8.7 NAD-dependent epimerase/dehydratase compare
Psyr_4369 -2.9 -4.9 glutamate-5-semialdehyde dehydrogenase compare
Psyr_2617 -2.9 -2.3 Secretion protein HlyD compare
Psyr_3193 -2.9 -2.0 Transcription factor jumonji, jmjC compare
Psyr_5067 -2.9 -6.4 conserved hypothetical protein compare
Psyr_1274 -2.8 -2.5 transferase hexapeptide repeat protein compare
Psyr_0920 -2.8 -16.0 Glycosyl transferase, group 1 compare
Psyr_3195 -2.8 -4.2 NolW-like protein compare
Psyr_1198 -2.8 -2.2 type III secretion protein HrpF compare
Psyr_0848 -2.7 -6.8 ketol-acid reductoisomerase compare
Psyr_0454 -2.7 -5.4 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_4991 -2.7 -2.9 hypothetical protein compare
Psyr_3199 -2.7 -2.6 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4044 -2.6 -4.6 Phospholipase D/Transphosphatidylase compare
Psyr_4130 -2.6 -8.3 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_3179 -2.6 -3.6 DNA translocase FtsK compare
Psyr_4116 -2.6 -1.6 Transport-associated protein compare
Psyr_3958 -2.5 -8.4 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_0826 -2.5 -7.1 glucose-6-phosphate isomerase compare
Psyr_1941 -2.5 -2.1 ATP-binding region, ATPase-like:Histidine kinase compare
Psyr_4683 -2.5 -4.3 dethiobiotin synthase compare
Psyr_4362 -2.5 -3.7 Rare lipoprotein A compare
Psyr_4466 -2.5 -2.5 Thioredoxin compare
Psyr_1212 -2.5 -1.9 type III secretion protein HrpO compare
Psyr_4673 -2.4 -2.0 Coenzyme PQQ synthesis D compare
Psyr_1410 -2.4 -3.8 Holliday junction DNA helicase RuvB compare
Psyr_0576 -2.4 -3.1 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_1308 -2.4 -2.6 Protein-glutamate methylesterase compare
Psyr_4155 -2.4 -2.0 Protein of unknown function DUF615 compare
Psyr_3675 -2.4 -2.3 adenosylcobinamide kinase compare
Psyr_0917 -2.4 -4.6 ABC-2 compare
Psyr_1596 -2.4 -1.8 Helix-turn-helix motif protein compare
Psyr_4417 -2.4 -2.0 Ferredoxin--nitrite reductase compare
Psyr_4194 -2.4 -4.4 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_2836 -2.4 -3.3 hypothetical protein compare
Psyr_4158 -2.3 -9.2 conserved hypothetical protein compare
Psyr_4566 -2.3 -9.5 Peptidase M23B compare
Psyr_1213 -2.3 -5.8 type III secretion cytoplasmic ATPase HrcN compare
Psyr_1211 -2.3 -3.9 type III secretion protein HrpP compare
Psyr_4134 -2.3 -7.5 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_2973 -2.3 -2.1 Glyoxalase I compare
Psyr_1257 -2.3 -7.0 2-isopropylmalate synthase compare
Psyr_0936 -2.3 -7.4 Glycosyl transferase, group 1 compare
Psyr_2594 -2.2 -1.8 unknown conserved protein in bacilli compare
Psyr_2833 -2.2 -1.7 CDS compare
Psyr_0033 -2.2 -3.6 tryptophan synthase, alpha chain compare
Psyr_3637 -2.2 -8.7 Glycosyl transferase, family 4 compare
Psyr_3545 -2.2 -3.6 Short-chain dehydrogenase/reductase SDR compare
Psyr_4465 -2.2 -1.4 conserved domain protein compare
Psyr_4750 -2.2 -2.2 cell division ATP-binding protein FtsE compare
Psyr_0918 -2.2 -8.8 ABC transporter compare
Psyr_4740 -2.2 -5.0 thiazole-phosphate synthase compare
Psyr_0914 -2.2 -6.4 Glycosyl transferase, group 1 compare
Psyr_4361 -2.1 -2.5 penicillin-binding protein 6, Serine peptidase, MEROPS family S11 compare
Psyr_3938 -2.1 -2.5 Amidase compare
Psyr_1402 -2.1 -1.9 SlyX compare
Psyr_4687 -2.1 -6.9 biotin synthase compare
Psyr_3432 -2.1 -2.4 MotA/TolQ/ExbB proton channel compare
Psyr_2117 -2.1 -2.1 conserved hypothetical protein compare
Psyr_0579 -2.1 -9.0 RNAse R compare
Psyr_4069 -2.1 -5.2 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_1707 -2.1 -3.7 transcriptional regulator, GntR family compare
Psyr_4018 -2.1 -7.0 Formyltetrahydrofolate deformylase compare
Psyr_3255 -2.1 -2.0 multisubunit potassium/proton antiporter, PhaE subunit compare
Psyr_4132 -2.1 -6.0 histidinol phosphate aminotransferase apoenzyme compare
Psyr_0847 -2.1 -4.4 acetolactate synthase, small subunit compare
Psyr_4896 -2.1 -4.2 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_4340 -2.0 -5.9 phosphomethylpyrimidine kinase, putative compare
Psyr_3377 -2.0 -1.6 transcriptional regulator, MarR family compare
Psyr_4408 -2.0 -7.6 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4068 -2.0 -2.1 conserved hypothetical protein compare
Psyr_3014 -2.0 -3.8 protoporphyrin IX magnesium-chelatase compare
Psyr_2031 -2.0 -2.2 ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal compare
Psyr_4894 -2.0 -5.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_0919 -1.9 -8.0 Chromosome segregation ATPase-like protein compare
Psyr_4133 -1.9 -6.5 histidinol dehydrogenase compare
Psyr_0923 -1.9 -4.0 hypothetical protein compare
Psyr_4143 -1.9 -1.8 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_1544 -1.9 -3.4 SirA-like protein compare
Psyr_0983 -1.9 -5.0 Protein of unknown function DUF159 compare
Psyr_1097 -1.9 -1.2 glycine cleavage system H protein compare
Psyr_4686 -1.9 -3.6 8-amino-7-oxononanoate synthase compare
Psyr_0726 -1.9 -3.3 ribosomal large subunit pseudouridine synthase D compare
Psyr_1373 -1.9 -1.3 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0435 -1.9 -1.4 membrane protein, putative compare
Psyr_2680 -1.9 -2.1 Binding-protein-dependent transport systems inner membrane component compare
Psyr_5053 -1.8 -3.5 asparaginase compare
Psyr_3296 -1.8 -2.3 MOSC:MOSC, N-terminal beta barrel compare
Psyr_3690 -1.8 -3.5 formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_0555 -1.8 -3.4 Protein of unknown function DUF330 compare
Psyr_1085 -1.8 -2.6 23S rRNA m(6)A-1618 methyltransferase compare
Psyr_4118 -1.8 -4.5 Glutathione S-transferase, N-terminal:Glutathione S-transferase, C-terminal compare
Psyr_4128 -1.8 -4.8 sulfate adenylyltransferase subunit 2 compare
Psyr_0569 -1.8 -3.8 N-acetylmuramoyl-L-alanine amidase compare
Psyr_1208 -1.8 -7.0 type III secretion protein HrcR compare
Psyr_1200 -1.8 -7.8 outer-membrane type III secretion protein HrcC compare
Psyr_3665 -1.8 -2.3 conserved hypothetical protein compare
Psyr_0532 -1.8 -3.9 conserved hypothetical protein compare
Psyr_0623 -1.8 -1.6 Peptidase S24, S26A and S26B compare
Psyr_3636 -1.8 -6.9 Polysaccharide biosynthesis protein CapD compare
Psyr_0014 -1.8 -2.5 lipid A biosynthesis acyltransferase compare
Psyr_1190 -1.7 -1.8 type III transcriptional regulator HrpR compare
Psyr_1216 -1.7 -5.1 type III secretion outer membrane protein PopN compare
Psyr_1191 -1.7 -5.5 type III transcriptional regulator HrpS compare
Psyr_0528 -1.7 -2.3 Carbamoyltransferase compare
Psyr_1458 -1.7 -2.7 hypothetical protein compare
Psyr_3133 -1.7 -1.5 Amidohydrolase 2 compare
Psyr_4470 -1.7 -3.2 ABC transporter compare
Psyr_4341 -1.7 -4.7 thiamine-phosphate diphosphorylase compare
Psyr_1054 -1.7 -4.2 alginate biosynthesis protein AlgJ compare
Psyr_0119 -1.7 -2.6 CDS compare
Psyr_4801 -1.7 -3.6 Outer membrane efflux protein compare
Psyr_3463 -1.7 -2.2 Flagellar protein FliS compare
Psyr_4335 -1.7 -1.7 transcriptional regulator, AsnC family compare
Psyr_1843 -1.7 -1.8 Protein of unknown function DUF1311 compare
Psyr_0259 -1.6 -2.2 Osmolarity sensor protein envZ compare
Psyr_1817 -1.6 -3.7 condensin subunit Smc compare
Psyr_2906 -1.6 -1.7 Pilus retraction protein PilT compare
Psyr_2601 -1.6 -5.3 regulatory protein, LuxR compare
Psyr_1210 -1.6 -2.6 type III secretion protein HrcQa compare
Psyr_3852 -1.6 -2.0 lipoprotein SlyB, putative compare
Psyr_3597 -1.6 -0.9 ABC transporter compare
Psyr_0951 -1.6 -1.7 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1988 -1.6 -2.0 2-keto-3-deoxy-phosphogalactonate aldolase compare
Psyr_3889 -1.6 -1.6 conserved hypothetical protein compare
Psyr_0137 -1.5 -1.1 outer membrane transport energization protein ExbD compare
Psyr_1206 -1.5 -3.5 type III secretion protein HrcT compare
Psyr_2774 -1.5 -1.6 Bacteriophage lambda tail assembly I compare
Psyr_0849 -1.5 -6.7 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
Psyr_2915 -1.5 -3.6 transcriptional regulator, AraC family with amidase-like domain protein compare
Psyr_3293 -1.5 -1.1 UspA compare
Psyr_0268 -1.5 -1.6 DSBA oxidoreductase compare
Psyr_5065 -1.5 -4.9 ATP-dependent DNA helicase UvrD compare
Psyr_4774 -1.5 -1.1 Hypothetical protein compare
Psyr_0270 -1.5 -1.9 DNA polymerase I compare
Psyr_2929 -1.5 -2.0 transcriptional regulator, LysR family compare


Specific Phenotypes

For 2 genes in this experiment