Experiment set2IT076 for Methanococcus maripaludis JJ

Compare to:

H2 McCas, 2.5g/L bicarb, 200 mM MOPs, 40 psi H2CO2, SO4 & Casamino Acid FREE

200 most important genes:

  gene name fitness t score description  
MMJJ_RS02035 -5.1 -7.9 4-hydroxy-tetrahydrodipicolinate synthase compare
MMJJ_RS09375 -5.0 -2.4 hypothetical protein compare
MMJJ_RS08625 -4.3 -6.6 magnesium/cobalt transporter CorA compare
MMJJ_RS03110 -4.2 -4.0 tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase compare
MMJJ_RS01755 -3.9 -2.7 ferrous iron transport protein B compare
MMJJ_RS07360 -3.9 -2.6 TIGR00269 family protein compare
MMJJ_RS08080 -3.8 -12.4 TIGR00300 family protein compare
MMJJ_RS01750 -3.7 -3.4 ferrous iron transport protein A compare
MMJJ_RS06180 -3.7 -3.6 tryptophan--tRNA ligase compare
MMJJ_RS06750 -3.7 -3.6 homoaconitase large subunit compare
MMJJ_RS06625 -3.6 -2.8 pyruvate synthase subunit PorB compare
MMJJ_RS06855 -3.5 -2.3 DUF2104 domain-containing protein compare
MMJJ_RS07000 -3.5 -2.3 TrkH family potassium uptake protein compare
MMJJ_RS05445 -3.4 -2.6 2-oxoacid:acceptor oxidoreductase subunit alpha compare
MMJJ_RS03200 -3.4 -3.5 uroporphyrinogen-III synthase compare
MMJJ_RS02920 -3.4 -2.3 30S ribosomal protein S27ae compare
MMJJ_RS08850 -3.3 -3.0 succinate dehydrogenase/fumarate reductase iron-sulfur subunit compare
MMJJ_RS07170 -3.2 -6.0 pyridoxal phosphate-dependent aminotransferase compare
MMJJ_RS05650 -3.1 -4.0 formylmethanofuran dehydrogenase subunit B compare
MMJJ_RS08660 -3.1 -4.1 acetylornithine transaminase compare
MMJJ_RS03760 -3.1 -4.1 hydrogenase maturation nickel metallochaperone HypA compare
MMJJ_RS09190 -3.0 -2.4 tryptophan synthase subunit beta compare
MMJJ_RS04800 -3.0 -8.1 2-phospho-L-lactate guanylyltransferase compare
MMJJ_RS01870 -3.0 -2.7 methanogenesis marker 15 protein compare
MMJJ_RS04200 -2.9 -7.9 triphosphoribosyl-dephospho-CoA synthase compare
MMJJ_RS01810 -2.9 -1.9 methyl coenzyme M reductase system, component A2 compare
MMJJ_RS05535 -2.9 -13.2 hypothetical protein compare
MMJJ_RS01600 -2.9 -3.5 radical SAM protein compare
MMJJ_RS07720 -2.8 -2.7 UPF0058 family protein compare
MMJJ_RS02200 -2.8 -10.0 chorismate pyruvate-lyase family protein compare
MMJJ_RS03840 -2.7 -4.4 DHH family phosphoesterase compare
MMJJ_RS06490 -2.7 -3.1 methanogenesis marker 2 protein compare
MMJJ_RS00600 -2.7 -4.1 hydroxymethylbilane synthase compare
MMJJ_RS04145 -2.6 -10.2 glutamate-1-semialdehyde 2,1-aminomutase compare
MMJJ_RS06840 -2.6 -4.7 nickel-dependent hydrogenase large subunit compare
MMJJ_RS07350 -2.6 -3.1 4Fe-4S binding protein compare
MMJJ_RS04685 -2.5 -10.0 carbamoyltransferase HypF compare
MMJJ_RS03785 -2.5 -3.0 hypothetical protein compare
MMJJ_RS06600 -2.5 -3.7 DUF555 domain-containing protein compare
MMJJ_RS03580 -2.5 -3.4 TIGR00303 family protein compare
MMJJ_RS03095 -2.5 -3.6 bifunctional N(6)-L-threonylcarbamoyladenine synthase/serine/threonine protein kinase compare
MMJJ_RS00125 -2.5 -3.2 KEOPS complex subunit Cgi121 compare
MMJJ_RS06390 -2.5 -2.2 NADPH-dependent F420 reductase compare
MMJJ_RS07705 -2.5 -3.3 GTP-binding protein EngB compare
MMJJ_RS06040 -2.5 -4.7 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS08095 -2.4 -4.8 cobyric acid synthase CobQ compare
MMJJ_RS03670 -2.4 -4.8 precorrin-2 C(20)-methyltransferase compare
MMJJ_RS03125 -2.4 -4.6 GMC oxidoreductase compare
MMJJ_RS08335 -2.4 -3.2 ABC transporter ATP-binding protein compare
MMJJ_RS04730 -2.4 -3.7 tyrosine decarboxylase MfnA compare
MMJJ_RS03170 -2.4 -9.3 DUF5612 domain-containing protein compare
MMJJ_RS06695 -2.3 -3.5 amidohydrolase compare
MMJJ_RS06240 -2.3 -3.1 dihydropteroate synthase-like protein compare
MMJJ_RS00560 -2.3 -4.2 homoisocitrate dehydrogenase compare
MMJJ_RS07190 -2.3 -4.3 RtcB family protein compare
MMJJ_RS05620 -2.3 -5.1 CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein compare
MMJJ_RS03615 -2.3 -3.0 cobalt-precorrin-8 methylmutase compare
MMJJ_RS00580 -2.2 -1.8 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase subunit CofG compare
MMJJ_RS03005 -2.2 -4.1 Ni-sirohydrochlorin a,c-diamide reductive cyclase catalytic subunit compare
MMJJ_RS07945 -2.2 -3.1 4Fe-4S binding protein compare
MMJJ_RS00645 -2.2 -11.6 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
MMJJ_RS06270 -2.2 -8.6 dethiobiotin synthase compare
MMJJ_RS03055 -2.2 -3.3 hypothetical protein compare
MMJJ_RS02040 -2.2 -3.1 Asp-tRNA(Asn) amidotransferase subunit GatC compare
MMJJ_RS05995 -2.2 -2.3 ATP-binding cassette domain-containing protein compare
MMJJ_RS00450 -2.2 -2.0 DUF126 domain-containing protein compare
MMJJ_RS03150 -2.2 -5.7 2-phospho-L-lactate transferase compare
MMJJ_RS07275 -2.2 -2.1 formate--phosphoribosylaminoimidazolecarboxamide ligase compare
MMJJ_RS02090 -2.2 -5.0 tyramine--L-glutamate ligase compare
MMJJ_RS05590 -2.1 -2.2 homoserine dehydrogenase compare
MMJJ_RS01350 -2.1 -6.6 sodium:proton antiporter compare
MMJJ_RS06155 -2.1 -6.3 phosphatidylglycerophosphatase A compare
MMJJ_RS03965 -2.1 -2.5 DNA-directed RNA polymerase subunit L compare
MMJJ_RS06510 -2.1 -3.7 LL-diaminopimelate aminotransferase compare
MMJJ_RS05155 -2.1 -4.9 5-amino-6-(D-ribitylamino)uracil--L-tyrosine 4-hydroxyphenyl transferase CofH compare
MMJJ_RS01935 -2.1 -3.9 O-phosphoseryl-tRNA(Sec) selenium transferase compare
MMJJ_RS03820 -2.1 -3.6 hydrogenase formation protein HypD compare
MMJJ_RS00215 -2.1 -2.5 CCA tRNA nucleotidyltransferase compare
MMJJ_RS07725 -2.1 -7.2 DNA primase DnaG compare
MMJJ_RS04675 -2.1 -6.8 thiamine pyrophosphate-binding protein compare
MMJJ_RS00275 -2.1 -2.5 coenzyme F420-0:L-glutamate ligase compare
MMJJ_RS05575 -2.1 -3.4 2-amino-5-formylamino-6-ribosylaminopyrimidin- 4(3H)-one 5'-monophosphate deformylase compare
MMJJ_RS04155 -2.0 -6.7 hypothetical protein compare
MMJJ_RS04995 -2.0 -5.1 Tfx family DNA-binding protein compare
MMJJ_RS07245 -2.0 -5.5 amidohydrolase family protein compare
MMJJ_RS06375 -2.0 -4.2 UbiX family flavin prenyltransferase compare
MMJJ_RS03895 -2.0 -3.9 hydrogenase expression/formation protein HypE compare
MMJJ_RS01200 -2.0 -3.1 PRC-barrel domain-containing protein compare
MMJJ_RS05610 -1.9 -3.9 CDP-2,3-bis-(O-geranylgeranyl)-sn-glycerol synthase compare
MMJJ_RS06225 -1.9 -2.2 adenosylmethionine decarboxylase compare
MMJJ_RS08055 -1.9 -5.9 methanogenesis marker 14 protein compare
MMJJ_RS05655 -1.9 -6.1 HisA/HisF family protein compare
MMJJ_RS07950 -1.9 -2.4 4Fe-4S binding protein compare
MMJJ_RS06250 -1.9 -2.6 nicotinamide-nucleotide adenylyltransferase compare
MMJJ_RS07980 -1.9 -9.9 biotin synthase BioB compare
MMJJ_RS03060 -1.9 -2.6 methanogenesis marker 7 protein compare
MMJJ_RS06485 -1.9 -2.9 phosphoglycerate kinase compare
MMJJ_RS06700 -1.9 -4.6 L-seryl-tRNA(Sec) kinase compare
MMJJ_RS05260 -1.9 -4.5 ATP-grasp domain-containing protein compare
MMJJ_RS04565 -1.9 -3.2 sirohydrochlorin nickelochelatase compare
MMJJ_RS00345 -1.9 -9.6 4-hydroxy-tetrahydrodipicolinate reductase compare
MMJJ_RS06930 -1.8 -2.6 type II methionyl aminopeptidase compare
MMJJ_RS04485 -1.8 -7.5 riboflavin synthase compare
MMJJ_RS04520 -1.8 -4.5 coenzyme F430 synthase compare
MMJJ_RS05070 -1.8 -2.3 DNA primase catalytic subunit PriS compare
MMJJ_RS04980 -1.8 -4.0 bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase compare
MMJJ_RS07015 -1.8 -1.8 PFL family protein compare
MMJJ_RS09130 -1.8 -1.9 NFYB/HAP3 family transcription factor subunit compare
MMJJ_RS03620 -1.7 -5.1 DUF2097 domain-containing protein compare
MMJJ_RS07410 -1.7 -3.1 methanogenesis marker protein Mmp4/MtxX compare
MMJJ_RS02045 -1.7 -2.7 molybdenum cofactor guanylyltransferase compare
MMJJ_RS00360 -1.7 -2.2 adenosylhomocysteinase compare
MMJJ_RS06265 -1.7 -11.5 8-amino-7-oxononanoate synthase compare
MMJJ_RS05950 -1.7 -3.6 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
MMJJ_RS00475 -1.7 -2.5 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
MMJJ_RS03865 -1.7 -1.5 phosphoribosyl-AMP cyclohydrolase compare
MMJJ_RS03815 -1.7 -2.0 nascent polypeptide-associated complex protein compare
MMJJ_RS08325 -1.7 -2.2 glycosyltransferase family 2 protein compare
MMJJ_RS06865 -1.7 -2.7 NADH-quinone oxidoreductase subunit H compare
MMJJ_RS07370 -1.7 -4.4 tRNA 4-thiouridine(8) synthase ThiI compare
MMJJ_RS07345 -1.7 -5.8 homocysteine biosynthesis protein compare
MMJJ_RS07470 -1.7 -2.4 50S ribosome-binding GTPase compare
MMJJ_RS05295 -1.6 -8.4 cobyrinic acid a,c-diamide synthase compare
MMJJ_RS08155 -1.6 -4.0 cobalt-precorrin-5B (C(1))-methyltransferase CbiD compare
MMJJ_RS06260 -1.6 -7.0 6-carboxyhexanoate--CoA ligase compare
MMJJ_RS04770 -1.6 -3.5 formate-dependent phosphoribosylglycinamide formyltransferase compare
MMJJ_RS04595 -1.6 -4.8 hypothetical protein compare
MMJJ_RS08535 -1.6 -3.5 NOL1/NOP2/sun family putative RNA methylase compare
MMJJ_RS08925 -1.6 -10.2 winged helix-turn-helix transcriptional regulator compare
MMJJ_RS06255 -1.6 -5.7 tRNA uridine(34) 5-carboxymethylaminomethyl modification radical SAM/GNAT enzyme Elp3 compare
MMJJ_RS01880 -1.6 -2.3 RlmE family RNA methyltransferase compare
MMJJ_RS01345 -1.5 -3.7 (5-formylfuran-3-yl)methyl phosphate synthase compare
MMJJ_RS06010 -1.5 -4.1 hypothetical protein compare
MMJJ_RS01875 -1.5 -4.7 global nitrogen regulator NrpR compare
MMJJ_RS06185 -1.5 -3.7 cobalamin biosynthesis protein compare
MMJJ_RS06110 -1.5 -1.6 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC compare
MMJJ_RS06400 -1.5 -4.0 FumA C-terminus/TtdB family hydratase beta subunit compare
MMJJ_RS03845 -1.5 -3.4 translation initiation factor IF-2 compare
MMJJ_RS07430 -1.5 -3.9 ribonuclease VapC compare
MMJJ_RS06220 -1.5 -5.0 polyamine aminopropyltransferase compare
MMJJ_RS03490 -1.5 -2.3 ribonuclease VapC compare
MMJJ_RS00370 -1.5 -2.0 asparagine synthase (glutamine-hydrolyzing) compare
MMJJ_RS07155 -1.5 -7.2 [5-(aminomethyl)furan-3-yl]methyl phosphate kinase compare
MMJJ_RS05810 -1.5 -4.5 precorrin-4 C(11)-methyltransferase compare
MMJJ_RS00205 -1.5 -4.4 adenosylcobinamide-phosphate synthase CbiB compare
MMJJ_RS06170 -1.4 -7.2 hypothetical protein compare
MMJJ_RS07455 -1.4 -5.8 coenzyme F420-reducing hydrogenase, FrhD protein compare
MMJJ_RS08340 -1.4 -4.6 archaeoflavoprotein AfpA compare
MMJJ_RS04700 -1.4 -5.3 deoxyhypusine synthase compare
MMJJ_RS06860 -1.4 -3.7 hypothetical protein compare
MMJJ_RS06715 -1.4 -8.8 lactaldehyde dehydrogenase compare
MMJJ_RS06885 -1.4 -2.1 EhaF family protein compare
MMJJ_RS03225 -1.4 -2.3 4Fe-4S binding protein compare
MMJJ_RS05595 -1.4 -2.5 hypothetical protein compare
MMJJ_RS03190 -1.4 -2.0 phosphopyruvate hydratase compare
MMJJ_RS08905 -1.4 -9.9 YcaO-related McrA-glycine thioamidation protein compare
MMJJ_RS01360 -1.4 -1.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
MMJJ_RS07505 -1.4 -1.0 DNA-directed RNA polymerase subunit K compare
MMJJ_RS08870 -1.4 -1.3 2-isopropylmalate synthase compare
MMJJ_RS04475 -1.4 -3.7 3,4-dihydroxy-2-butanone-4-phosphate synthase compare
MMJJ_RS01690 -1.4 -2.8 methanogenesis marker 12 protein compare
MMJJ_RS01830 -1.3 -2.1 tRNA(Ile)(2)-agmatinylcytidine synthase compare
MMJJ_RS04975 -1.3 -1.7 glycosyltransferase family 4 protein compare
MMJJ_RS04050 -1.3 -1.5 dihydroneopterin aldolase family protein compare
MMJJ_RS08320 -1.3 -1.6 CDP-diacylglycerol--serine O-phosphatidyltransferase compare
MMJJ_RS06175 -1.3 -1.8 DUF1743 domain-containing protein compare
MMJJ_RS04670 -1.3 -2.9 DUF2117 domain-containing protein compare
MMJJ_RS06875 -1.3 -1.7 hypothetical protein compare
MMJJ_RS03230 -1.3 -2.5 NAD(P)/FAD-dependent oxidoreductase compare
MMJJ_RS08470 -1.3 -1.3 ferredoxin family protein compare
MMJJ_RS06805 -1.3 -1.8 monovalent cation/H+ antiporter subunit E compare
MMJJ_RS04150 -1.3 -2.8 DUF5379 domain-containing protein compare
MMJJ_RS03650 -1.2 -5.3 class I SAM-dependent methyltransferase family protein compare
MMJJ_RS08010 -1.2 -6.1 phosphoadenosine phosphosulfate reductase family protein compare
MMJJ_RS08020 -1.2 -6.7 nucleotidyltransferase domain-containing protein compare
MMJJ_RS00270 -1.2 -2.2 adenosylcobinamide-GDP ribazoletransferase compare
MMJJ_RS04110 -1.2 -3.7 hypothetical protein compare
MMJJ_RS03310 -1.2 -2.9 hypothetical protein compare
MMJJ_RS01410 -1.2 -3.8 archaeal proteasome endopeptidase complex subunit beta compare
MMJJ_RS05490 -1.2 -2.0 imidazole glycerol phosphate synthase subunit HisF compare
MMJJ_RS00570 -1.2 -1.6 ribonuclease P compare
MMJJ_RS05935 -1.2 -1.8 Era-like GTP-binding protein compare
MMJJ_RS07160 -1.2 -10.0 M20 family metallo-hydrolase compare
MMJJ_RS06215 -1.2 -3.0 agmatinase compare
MMJJ_RS06925 -1.2 -2.1 GMP synthase subunit A compare
MMJJ_RS02275 -1.2 -2.7 nucleotidyltransferase domain-containing protein compare
MMJJ_RS08330 -1.2 -2.3 SufD family Fe-S cluster assembly protein compare
MMJJ_RS05770 -1.2 -1.9 flagellar protein D compare
MMJJ_RS03270 -1.2 -1.6 ribosome biogenesis/translation initiation ATPase RLI compare
MMJJ_RS04655 -1.2 -4.7 FAD-dependent oxidoreductase compare
MMJJ_RS02855 -1.2 -6.2 DEAD/DEAH box helicase compare
MMJJ_RS00195 -1.1 -2.2 precorrin-3B C(17)-methyltransferase compare
MMJJ_RS09055 -1.1 -5.2 NFACT family protein compare
MMJJ_RS08620 -1.1 -2.8 DUF373 family protein compare
MMJJ_RS03245 -1.1 -1.6 UMP kinase compare
MMJJ_RS06015 -1.1 -6.5 Na(+)/H(+) antiporter subunit B compare
MMJJ_RS06705 -1.1 -3.2 bifunctional NADP phosphatase/NAD kinase compare
MMJJ_RS03295 -1.1 -7.7 PHP domain-containing protein compare
MMJJ_RS03115 -1.1 -3.5 sulfopyruvate decarboxylase subunit alpha compare
MMJJ_RS08795 -1.1 -1.7 phosphoglucosamine mutase compare


Specific Phenotypes

None in this experiment

For Methanococcus maripaludis JJ in nutrient t1 experiments

For nutrient t1 Sodium acetate across organisms