Experiment set2IT076 for Burkholderia phytofirmans PsJN

Compare to:

L-Arginine carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS04955 -7.0 -2.5 methionyl-tRNA synthetase compare
BPHYT_RS07690 -6.3 -4.3 AraC family transcriptional regulator compare
BPHYT_RS14845 -5.8 -4.0 cysteine synthase compare
BPHYT_RS16710 -5.6 -2.0 LysR family transcriptional regulator compare
BPHYT_RS16270 -5.5 -5.4 phosphoglycerate kinase compare
BPHYT_RS13705 -5.2 -6.1 chorismate synthase compare
BPHYT_RS09500 -5.2 -9.7 glucose-6-phosphate isomerase compare
BPHYT_RS17405 -4.9 -1.7 indole-3-glycerol phosphate synthase compare
BPHYT_RS17685 -4.9 -12.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS04740 -4.8 -9.8 sulfate adenylyltransferase subunit 2 compare
BPHYT_RS04725 -4.6 -9.4 sulfite reductase compare
BPHYT_RS14865 -4.5 -6.1 UDP-glucose 6-dehydrogenase compare
BPHYT_RS33880 -4.4 -9.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS17680 -4.4 -4.2 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS08565 -4.4 -2.2 dihydroorotate dehydrogenase compare
BPHYT_RS17675 -4.4 -3.8 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS07675 -4.3 -4.0 ABC transporter for L-Arginine, permease component 2 (from data) compare
BPHYT_RS17890 -4.3 -3.4 shikimate kinase compare
BPHYT_RS17400 -4.2 -9.2 anthranilate phosphoribosyltransferase compare
BPHYT_RS33900 -4.2 -13.5 3-isopropylmalate dehydrogenase compare
BPHYT_RS06555 -4.2 -15.0 ketol-acid reductoisomerase compare
BPHYT_RS03150 -4.2 -13.6 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS06900 -4.1 -11.6 aspartate aminotransferase compare
BPHYT_RS06610 -4.1 -2.9 triosephosphate isomerase compare
BPHYT_RS01625 -4.1 -5.5 chemotaxis protein CheY compare
BPHYT_RS02590 -4.0 -8.8 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS06545 -4.0 -11.6 acetolactate synthase compare
BPHYT_RS02965 -4.0 -4.7 membrane protein compare
BPHYT_RS02610 -4.0 -7.6 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS33875 -3.9 -10.4 tryptophan synthase subunit alpha compare
BPHYT_RS01595 -3.9 -12.3 homoserine O-acetyltransferase compare
BPHYT_RS17670 -3.9 -7.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33915 -3.8 -8.7 isopropylmalate isomerase compare
BPHYT_RS18320 -3.8 -12.1 orotate phosphoribosyltransferase compare
BPHYT_RS17700 -3.7 -5.4 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS03640 -3.7 -5.6 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS09515 -3.7 -4.8 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS17885 -3.7 -9.0 3-dehydroquinate synthase compare
BPHYT_RS23840 -3.7 -5.4 methyltransferase compare
BPHYT_RS17390 -3.7 -14.6 anthranilate synthase subunit I compare
BPHYT_RS16835 -3.7 -8.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS08955 -3.7 -7.7 homoserine dehydrogenase compare
BPHYT_RS16905 -3.7 -8.6 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS07720 -3.6 -8.8 Succinylglutamate desuccinylase (EC 3.5.1.96) (from data) conserved
BPHYT_RS08850 -3.6 -3.6 transcriptional regulator compare
BPHYT_RS15710 -3.6 -3.1 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS16675 -3.6 -3.9 dihydroorotase compare
BPHYT_RS06530 -3.6 -2.3 membrane protein compare
BPHYT_RS12530 -3.5 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS12845 -3.5 -17.6 ATPase compare
BPHYT_RS33835 -3.5 -9.7 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS06405 -3.4 -7.0 phosphoribosylamine--glycine ligase compare
BPHYT_RS14190 -3.4 -10.6 carbamoyl phosphate synthase large subunit compare
BPHYT_RS16255 -3.3 -5.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS14895 -3.3 -5.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS33645 -3.2 -7.9 homoserine kinase compare
BPHYT_RS07735 -3.2 -10.9 ABC transporter for L-Arginine, periplasmic substrate-binding component (from data) compare
BPHYT_RS04745 -3.2 -8.0 sulfate adenylyltransferase compare
BPHYT_RS14910 -3.1 -9.9 chorismate mutase compare
BPHYT_RS07680 -3.1 -10.0 ABC transporter for L-Arginine, permease component 1 (from data) conserved
BPHYT_RS07705 -3.1 -4.1 arginine succinyltransferase compare
BPHYT_RS04730 -3.1 -3.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
BPHYT_RS09160 -3.1 -6.4 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS16245 -3.1 -6.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS17715 -3.0 -9.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS33840 -3.0 -7.3 amidophosphoribosyltransferase compare
BPHYT_RS01485 -3.0 -1.4 histidine kinase compare
BPHYT_RS08960 -2.8 -2.8 threonine synthase compare
BPHYT_RS08245 -2.8 -7.7 anti-sigma factor compare
BPHYT_RS01620 -2.8 -10.4 sensor histidine kinase compare
BPHYT_RS33865 -2.5 -7.8 tryptophan synthase alpha chain compare
BPHYT_RS16555 -2.4 -3.1 cation transporter compare
BPHYT_RS16840 -2.4 -4.1 transketolase compare
BPHYT_RS03725 -2.4 -2.4 serine hydroxymethyltransferase compare
BPHYT_RS04720 -2.4 -6.3 transcriptional regulator compare
BPHYT_RS14915 -2.4 -9.1 phosphoserine aminotransferase compare
BPHYT_RS09480 -2.3 -2.2 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS20235 -2.3 -5.8 iron ABC transporter compare
BPHYT_RS02860 -2.3 -1.7 membrane protein compare
BPHYT_RS12465 -2.3 -5.2 inositol monophosphatase compare
BPHYT_RS04290 -2.3 -2.7 glycosyl transferase family 2 compare
BPHYT_RS25780 -2.2 -1.9 DeoR faimly transcriptional regulator compare
BPHYT_RS33580 -2.2 -7.2 geranyltranstransferase compare
BPHYT_RS12055 -2.2 -15.6 phosphoenolpyruvate synthase compare
BPHYT_RS01590 -2.2 -8.4 methionine biosynthesis protein MetW compare
BPHYT_RS14195 -2.1 -2.6 carbamoyl phosphate synthase small subunit compare
BPHYT_RS17035 -2.0 -4.3 sugar kinase compare
BPHYT_RS02570 -1.9 -8.7 phosphocarrier protein HPr compare
BPHYT_RS00915 -1.9 -8.3 IclR family transcriptional regulator compare
BPHYT_RS06685 -1.9 -3.0 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS04285 -1.9 -2.3 rhamnosyltransferase compare
BPHYT_RS03495 -1.9 -4.6 hypothetical protein compare
BPHYT_RS16880 -1.8 -1.9 malic enzyme compare
BPHYT_RS04335 -1.8 -1.7 membrane protein compare
BPHYT_RS17690 -1.8 -8.3 imidazole glycerol phosphate synthase compare
BPHYT_RS04920 -1.7 -1.8 aspartate 1-decarboxylase compare
BPHYT_RS06535 -1.7 -2.6 membrane protein compare
BPHYT_RS24500 -1.7 -2.5 histidine kinase compare
BPHYT_RS23210 -1.7 -1.6 MFS transporter compare
BPHYT_RS15645 -1.7 -7.9 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS14670 -1.6 -1.8 hypothetical protein compare
BPHYT_RS12840 -1.6 -4.0 pyruvate dehydrogenase compare
BPHYT_RS16215 -1.6 -5.2 sensor histidine kinase compare
BPHYT_RS06350 -1.6 -2.8 chemotaxis protein CheY compare
BPHYT_RS02285 -1.6 -6.5 cell division protein compare
BPHYT_RS19565 -1.6 -7.7 gamma-glutamyl:cysteine ligase compare
BPHYT_RS01455 -1.5 -1.1 peptide deformylase compare
BPHYT_RS15075 -1.5 -2.6 dihydrokaempferol 4-reductase compare
BPHYT_RS08030 -1.5 -4.1 transposase compare
BPHYT_RS17860 -1.5 -4.2 transposase compare
BPHYT_RS00980 -1.4 -1.3 GCN5 family acetyltransferase compare
BPHYT_RS15650 -1.4 -9.6 quinolinate synthetase compare
BPHYT_RS33920 -1.4 -7.2 type II citrate synthase compare
BPHYT_RS13220 -1.4 -9.1 phosphomethylpyrimidine synthase compare
BPHYT_RS03645 -1.4 -2.9 tRNA dimethylallyltransferase compare
BPHYT_RS19570 -1.4 -10.0 sodium/hydrogen exchanger compare
BPHYT_RS05515 -1.3 -3.2 hypothetical protein compare
BPHYT_RS20245 -1.3 -4.3 iron ABC transporter substrate-binding protein compare
BPHYT_RS36275 -1.3 -0.8 hypothetical protein compare
BPHYT_RS35885 -1.3 -2.2 hypothetical protein compare
BPHYT_RS17640 -1.3 -3.6 2-alkenal reductase compare
BPHYT_RS02885 -1.3 -5.9 glmZ(sRNA)-inactivating NTPase compare
BPHYT_RS06400 -1.2 -5.5 oxygen-dependent coproporphyrinogen-III oxidase compare
BPHYT_RS03535 -1.2 -3.6 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS00770 -1.2 -1.3 conjugal transfer protein TraC compare
BPHYT_RS17075 -1.2 -3.6 ABC transporter permease compare
BPHYT_RS10100 -1.2 -3.8 dihydroxy-acid dehydratase compare
BPHYT_RS02865 -1.2 -3.0 hypothetical protein compare
BPHYT_RS15620 -1.2 -3.7 peptidyl-prolyl cis-trans isomerase compare
BPHYT_RS30365 -1.2 -1.0 beta-lactamase compare
BPHYT_RS17100 -1.2 -4.8 RNA pyrophosphohydrolase compare
BPHYT_RS30750 -1.2 -1.9 GntR family transcriptional regulator compare
BPHYT_RS09145 -1.2 -6.0 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS08805 -1.2 -3.5 sulfate ABC transporter ATP-binding protein compare
BPHYT_RS21335 -1.2 -2.1 CDP-alcohol phosphatidyltransferase compare
BPHYT_RS06410 -1.2 -1.5 transcriptional regulator compare
BPHYT_RS17920 -1.1 -1.5 protein CyaY compare
BPHYT_RS12925 -1.1 -1.2 exodeoxyribonuclease III compare
BPHYT_RS14855 -1.1 -1.4 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS36570 -1.1 -1.4 histone compare
BPHYT_RS19335 -1.1 -3.7 hypothetical protein compare
BPHYT_RS28705 -1.1 -1.6 IclR family transcriptional regulator compare
BPHYT_RS09585 -1.1 -2.2 hypothetical protein compare
BPHYT_RS30795 -1.1 -1.2 short-chain dehydrogenase compare
BPHYT_RS18705 -1.1 -1.0 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS32260 -1.1 -1.3 hypothetical protein compare
BPHYT_RS00055 -1.1 -1.7 hypothetical protein compare
BPHYT_RS10540 -1.1 -1.5 secretion protein compare
BPHYT_RS07325 -1.1 -1.1 GntR family transcriptional regulator compare
BPHYT_RS05615 -1.1 -1.4 hypothetical protein compare
BPHYT_RS31950 -1.1 -2.0 short-chain dehydrogenase compare
BPHYT_RS31910 -1.1 -1.5 hypothetical protein compare
BPHYT_RS34125 -1.1 -3.3 heavy metal translocating P-type ATPase compare
BPHYT_RS32495 -1.1 -1.6 ABC transporter compare
BPHYT_RS32475 -1.1 -2.0 dihydroxyacetone kinase compare
BPHYT_RS23230 -1.0 -1.4 histidine kinase compare
BPHYT_RS03570 -1.0 -4.0 heat-inducible transcription repressor HrcA compare
BPHYT_RS14140 -1.0 -2.8 phosphate transporter permease subunit PstC compare
BPHYT_RS17165 -1.0 -3.5 cell division protein ZapD compare
BPHYT_RS14135 -1.0 -4.5 phosphate transporter permease subunit PtsA compare
BPHYT_RS20665 -1.0 -0.8 LysR family transcriptional regulator compare
BPHYT_RS04340 -1.0 -3.4 hypothetical protein compare
BPHYT_RS04965 -1.0 -4.7 ATP-binding protein compare
BPHYT_RS31255 -1.0 -1.4 cytochrome B561 compare
BPHYT_RS02765 -1.0 -1.9 cytochrome BD oxidase subunit I compare
BPHYT_RS02760 -1.0 -2.5 cytochrome BD oxidase subunit II compare
BPHYT_RS18910 -1.0 -1.4 FlgN compare
BPHYT_RS09895 -1.0 -1.4 LysR family transcriptional regulator compare
BPHYT_RS34490 -1.0 -1.1 hypothetical protein compare
BPHYT_RS08790 -1.0 -2.7 ABC transporter permease compare
BPHYT_RS30160 -1.0 -2.4 AraC family transcriptional regulator compare
BPHYT_RS13200 -1.0 -1.6 molybdopterin binding oxidoreductase compare
BPHYT_RS19680 -1.0 -6.7 glutamate--cysteine ligase compare
BPHYT_RS20240 -1.0 -2.8 iron reductase compare
BPHYT_RS00685 -1.0 -1.2 transcriptional regulator compare
BPHYT_RS12535 -0.9 -1.2 membrane protein compare
BPHYT_RS22455 -0.9 -1.0 phosphonate ABC transporter substrate-binding protein compare
BPHYT_RS17240 -0.9 -1.1 cell division protein FtsW compare
BPHYT_RS18610 -0.9 -5.7 lytic transglycosylase compare
BPHYT_RS23155 -0.9 -1.3 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) compare
BPHYT_RS06990 -0.9 -1.4 membrane protein compare
BPHYT_RS01240 -0.9 -2.1 hypothetical protein compare
BPHYT_RS02595 -0.9 -0.9 sulfurtransferase compare
BPHYT_RS22295 -0.9 -1.2 LysR family transcriptional regulator compare
BPHYT_RS29110 -0.9 -1.9 DNA-directed DNA polymerase compare
BPHYT_RS09155 -0.9 -4.2 3-ketoacyl-ACP reductase compare
BPHYT_RS34810 -0.9 -3.9 RND transporter compare
BPHYT_RS18615 -0.9 -3.7 5-formyltetrahydrofolate cyclo-ligase compare
BPHYT_RS28350 -0.9 -1.9 fatty acid desaturase compare
BPHYT_RS19545 -0.9 -3.4 nuclear protein SET compare
BPHYT_RS12150 -0.9 -6.6 PII uridylyl-transferase compare
BPHYT_RS09620 -0.9 -2.7 aminodeoxychorismate lyase compare
BPHYT_RS02435 -0.9 -1.0 hypothetical protein compare
BPHYT_RS01345 -0.9 -4.4 endonuclease/exonuclease/phosphatase compare
BPHYT_RS21385 -0.9 -1.7 short-chain dehydrogenase compare
BPHYT_RS04950 -0.9 -6.4 hypothetical protein compare
BPHYT_RS14125 -0.9 -1.4 transcriptional regulator compare
BPHYT_RS18255 -0.9 -2.5 phenylacetate-CoA oxygenase subunit PaaB compare
BPHYT_RS11705 -0.9 -1.0 hypothetical protein compare
BPHYT_RS04010 -0.9 -1.1 glycosyl transferase compare


Specific Phenotypes

For 3 genes in this experiment

For carbon source L-Arginine in Burkholderia phytofirmans PsJN

For carbon source L-Arginine across organisms