Experiment set2IT075 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic, sonication recovery; Green bean

200 most important genes:

  gene name fitness t score description  
Psyr_4270 -4.9 -4.8 serine hydroxymethyltransferase compare
Psyr_4580 -4.9 -2.8 anthranilate phosphoribosyltransferase compare
Psyr_1983 -4.8 -3.3 3-isopropylmalate dehydratase, large subunit compare
Psyr_0473 -4.7 -5.5 Methionine biosynthesis MetW compare
Psyr_4609 -4.6 -10.3 anthranilate synthase, component I compare
Psyr_4893 -4.3 -1.2 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_4133 -4.3 -11.1 histidinol dehydrogenase compare
Psyr_1614 -4.2 -2.4 lipid A biosynthesis acyltransferase compare
Psyr_0033 -4.1 -2.9 tryptophan synthase, alpha chain compare
Psyr_1984 -4.1 -3.0 3-isopropylmalate dehydratase, small subunit compare
Psyr_1985 -4.1 -6.3 3-isopropylmalate dehydrogenase compare
Psyr_0576 -4.1 -3.9 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_2190 -4.0 -2.1 NADH:flavin oxidoreductase/NADH oxidase compare
Psyr_1669 -4.0 -9.5 O-succinylhomoserine sulfhydrylase compare
Psyr_0529 -3.9 -4.6 Glycosyl transferase, group 1 compare
Psyr_4407 -3.9 -2.2 phosphoribosylamine--glycine ligase compare
Psyr_0378 -3.9 -2.7 Glycosyl transferase, family 2 compare
Psyr_1668 -3.9 -5.3 amidophosphoribosyltransferase compare
Psyr_0034 -3.9 -2.7 tryptophan synthase, beta chain compare
Psyr_0704 -3.9 -9.9 glutamate 5-kinase compare
Psyr_4262 -3.8 -1.1 lipoprotein, putative compare
Psyr_1350 -3.7 -4.3 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_3958 -3.6 -10.9 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_0847 -3.6 -8.0 acetolactate synthase, small subunit compare
Psyr_1613 -3.6 -3.5 septum site-determining protein MinC compare
Psyr_0167 -3.6 -3.7 hypothetical protein compare
Psyr_0915 -3.5 -10.2 NAD-dependent epimerase/dehydratase compare
Psyr_1408 -3.5 -1.8 Holliday junction endonuclease RuvC compare
Psyr_1269 -3.5 -2.4 phosphoribosylformylglycinamidine synthase compare
Psyr_5029 -3.5 -2.2 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_3008 -3.4 -4.7 Undecaprenyl-diphosphatase compare
Psyr_0531 -3.4 -1.7 LmbE-like protein compare
Psyr_1670 -3.4 -2.2 Short-chain dehydrogenase/reductase SDR compare
Psyr_4896 -3.4 -7.6 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_0474 -3.3 -8.8 homoserine O-acetyltransferase compare
Psyr_1056 -3.3 -4.2 Poly(beta-D-mannuronate) lyase compare
Psyr_4151 -3.3 -0.9 Phosphocarrier HPr protein compare
Psyr_4897 -3.2 -3.8 imidazoleglycerol-phosphate dehydratase compare
Psyr_3152 -3.2 -1.2 hypothetical protein compare
Psyr_0219 -3.2 -10.9 phosphomannomutase compare
Psyr_4581 -3.2 -1.9 anthranilate synthase, component II compare
Psyr_0014 -3.1 -4.4 lipid A biosynthesis acyltransferase compare
Psyr_0469 -3.1 -10.3 dihydroxyacid dehydratase compare
Psyr_0951 -3.1 -2.4 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_0826 -3.1 -4.2 glucose-6-phosphate isomerase compare
Psyr_3906 -3.0 -1.7 regulatory protein, DeoR compare
Psyr_4144 -3.0 -0.8 Protein of unknown function DUF1239 compare
Psyr_4894 -2.9 -5.5 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_1748 -2.9 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_0846 -2.9 -10.6 acetolactate synthase, large subunit compare
Psyr_2823 -2.8 -1.1 hypothetical protein compare
Psyr_1719 -2.8 -2.2 conserved hypothetical protein compare
Psyr_4363 -2.8 -5.5 membrane-bound lytic murein transglycosylase B compare
Psyr_2312 -2.7 -0.9 Protein of unknown function DUF24 compare
Psyr_3193 -2.7 -1.6 Transcription factor jumonji, jmjC compare
Psyr_0848 -2.7 -6.9 ketol-acid reductoisomerase compare
Psyr_4404 -2.7 -2.4 tRNA-U20-dihydrouridine synthase compare
Psyr_5129 -2.7 -4.1 chromosome segregation DNA-binding protein compare
Psyr_0377 -2.7 -7.2 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_1277 -2.7 -1.7 formate-dependent phosphoribosylglycinamide formyltransferase compare
Psyr_4143 -2.7 -2.3 HAD-superfamily hydrolase, subfamily IIIA:Phosphatase YrbI compare
Psyr_3287 -2.6 -1.9 DNA topoisomerase I compare
Psyr_1515 -2.6 -6.2 hypothetical protein compare
Psyr_4369 -2.6 -4.5 glutamate-5-semialdehyde dehydrogenase compare
Psyr_0373 -2.6 -1.6 CDS compare
Psyr_0025 -2.6 -3.2 shikimate dehydrogenase compare
Psyr_3637 -2.6 -11.2 Glycosyl transferase, family 4 compare
Psyr_3701 -2.5 -2.4 thioredoxin, putative compare
Psyr_1663 -2.5 -4.2 phosphoribosylanthranilate isomerase compare
Psyr_4100 -2.5 -5.6 D-alanine--D-alanine ligase compare
Psyr_3640 -2.5 -2.5 conserved hypothetical protein compare
Psyr_0532 -2.5 -4.5 conserved hypothetical protein compare
Psyr_0920 -2.5 -15.6 Glycosyl transferase, group 1 compare
Psyr_5132 -2.4 -1.5 Glucose-inhibited division protein A subfamily compare
Psyr_0534 -2.4 -11.2 membrane protein, putative compare
Psyr_0784 -2.4 -1.3 CheW-like protein compare
Psyr_0070 -2.4 -1.8 hypothetical protein compare
Psyr_4408 -2.4 -8.0 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_4155 -2.4 -1.8 Protein of unknown function DUF615 compare
Psyr_4130 -2.4 -7.9 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_0914 -2.4 -6.7 Glycosyl transferase, group 1 compare
Psyr_0616 -2.3 -2.1 conserved domain protein compare
Psyr_3293 -2.3 -1.8 UspA compare
Psyr_4852 -2.3 -4.5 D-3-phosphoglycerate dehydrogenase compare
Psyr_4134 -2.3 -6.2 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_1198 -2.3 -2.0 type III secretion protein HrpF compare
Psyr_4194 -2.2 -4.1 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_0454 -2.2 -4.9 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1633 -2.2 -1.0 MotA/TolQ/ExbB proton channel compare
Psyr_1217 -2.2 -3.4 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_0595 -2.2 -3.9 Nicotinate phosphoribosyltransferase compare
Psyr_1843 -2.2 -1.6 Protein of unknown function DUF1311 compare
Psyr_4627 -2.2 -2.2 dimethyladenosine transferase compare
Psyr_0575 -2.2 -3.0 protease FtsH subunit HflC compare
Psyr_3213 -2.2 -2.7 Propeptide, PepSY amd peptidase M4 compare
Psyr_3644 -2.2 -3.1 prephenate dehydrogenase compare
Psyr_0827 -2.2 -3.6 pantothenate synthetase compare
Psyr_4940 -2.2 -1.8 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_1251 -2.2 -3.3 quinoprotein compare
Psyr_3567 -2.2 -2.0 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_0385 -2.2 -2.4 phosphoribosyl-ATP pyrophosphatase compare
Psyr_1667 -2.2 -5.2 Colicin V production protein compare
Psyr_2069 -2.2 -2.2 conserved hypothetical protein compare
Psyr_4087 -2.1 -1.0 Protein of unknown function DUF520 compare
Psyr_1210 -2.1 -4.0 type III secretion protein HrcQa compare
Psyr_1968 -2.1 -1.9 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_0579 -2.1 -9.7 RNAse R compare
Psyr_2039 -2.1 -1.4 Fimbrial protein compare
Psyr_4740 -2.1 -4.4 thiazole-phosphate synthase compare
Psyr_5067 -2.1 -5.2 conserved hypothetical protein compare
Psyr_2211 -2.1 -2.1 monooxygenase, NtaA/SnaA/SoxA family compare
Psyr_2679 -2.1 -3.1 Binding-protein-dependent transport systems inner membrane component compare
Psyr_0917 -2.1 -3.7 ABC-2 compare
Psyr_4991 -2.0 -2.2 hypothetical protein compare
Psyr_4418 -2.0 -2.0 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_5072 -2.0 -0.8 Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K compare
Psyr_4132 -2.0 -4.8 histidinol phosphate aminotransferase apoenzyme compare
Psyr_2848 -2.0 -3.5 hypothetical protein compare
Psyr_3459 -2.0 -1.7 Helix-turn-helix, Fis-type compare
Psyr_0528 -2.0 -1.9 Carbamoyltransferase compare
Psyr_3394 -2.0 -3.6 conserved hypothetical protein compare
Psyr_3581 -2.0 -4.9 ribosomal large subunit pseudouridine synthase B compare
Psyr_1410 -2.0 -3.4 Holliday junction DNA helicase RuvB compare
Psyr_3626 -2.0 -3.2 transcriptional regulator, MarR family compare
Psyr_1907 -2.0 -2.2 GTP cyclohydrolase I compare
Psyr_3684 -2.0 -1.6 NLP/P60 compare
Psyr_4788 -2.0 -1.5 lipoprotein, putative compare
Psyr_3755 -1.9 -0.8 conserved hypothetical protein compare
Psyr_1811 -1.9 -1.6 transcriptional regulator, GntR family compare
Psyr_1154 -1.9 -2.1 Copper/Zinc superoxide dismutase compare
Psyr_0699 -1.9 -2.6 CDS compare
Psyr_2613 -1.9 -4.5 Cyclic peptide transporter compare
Psyr_0919 -1.9 -7.9 Chromosome segregation ATPase-like protein compare
Psyr_0535 -1.9 -2.5 toluene tolerance protein, putative compare
Psyr_2955 -1.9 -2.9 Surfeit locus 4-related protein compare
Psyr_2067 -1.9 -1.2 ABC transporter compare
Psyr_0395 -1.8 -2.4 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B compare
Psyr_3555 -1.8 -1.1 aspartate kinase compare
Psyr_1662 -1.8 -5.8 tRNA pseudouridine synthase compare
Psyr_0936 -1.8 -6.5 Glycosyl transferase, group 1 compare
Psyr_4018 -1.8 -5.4 Formyltetrahydrofolate deformylase compare
Psyr_3636 -1.8 -7.3 Polysaccharide biosynthesis protein CapD compare
Psyr_4403 -1.8 -3.2 conserved hypothetical protein compare
Psyr_1401 -1.8 -3.6 Histidine triad (HIT) protein compare
Psyr_0758 -1.8 -11.5 beta-fructofuranosidase compare
Psyr_3179 -1.8 -2.1 DNA translocase FtsK compare
Psyr_1055 -1.8 -9.3 Membrane bound O-acyl transferase, MBOAT compare
Psyr_3199 -1.8 -2.6 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_3023 -1.8 -3.1 conserved hypothetical protein compare
Psyr_2680 -1.8 -2.8 Binding-protein-dependent transport systems inner membrane component compare
Psyr_4341 -1.8 -4.5 thiamine-phosphate diphosphorylase compare
Psyr_1053 -1.8 -4.6 alginate biosynthesis protein AlgF compare
Psyr_0170 -1.8 -1.6 heat shock protein Hsp15 compare
Psyr_1218 -1.8 -5.6 type III helper protein HrpK1 compare
Psyr_1111 -1.8 -1.2 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_0478 -1.8 -5.9 pilus retraction ATPase PilT compare
Psyr_2594 -1.7 -1.2 unknown conserved protein in bacilli compare
Psyr_1197 -1.7 -3.2 type III secretion protein HrpE compare
Psyr_1650 -1.7 -2.1 aminodeoxychorismate lyase apoprotein compare
Psyr_3300 -1.7 -4.0 Conserved hypothetical protein 147 compare
Psyr_4566 -1.7 -7.0 Peptidase M23B compare
Psyr_0923 -1.7 -4.7 hypothetical protein compare
Psyr_1934 -1.7 -4.2 conserved hypothetical protein compare
Psyr_2461 -1.7 -2.4 Uncharacterized conserved protein UCP030820 compare
Psyr_3043 -1.7 -3.3 Paraquat-inducible protein A compare
Psyr_4224 -1.7 -1.4 conserved hypothetical protein compare
Psyr_3674 -1.7 -1.8 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_4015 -1.7 -1.7 conserved domain protein compare
Psyr_1419 -1.7 -2.5 preQ(0) biosynthesis protein QueC compare
Psyr_4450 -1.6 -3.4 transcriptional regulator, TetR family compare
Psyr_2921 -1.6 -1.3 ADP-ribosylglycohydrolase compare
Psyr_4686 -1.6 -3.6 8-amino-7-oxononanoate synthase compare
Psyr_2855 -1.6 -3.2 methionine synthase (B12-independent) compare
Psyr_5055 -1.6 -3.4 YeeE/YedE compare
Psyr_1373 -1.6 -1.1 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_0574 -1.6 -4.3 protease FtsH subunit HflK compare
Psyr_3143 -1.6 -2.2 general secretion pathway protein M, putative compare
Psyr_4128 -1.6 -5.2 sulfate adenylyltransferase subunit 2 compare
Psyr_4285 -1.6 -1.8 Ferredoxin:[2Fe-2S]-binding protein compare
Psyr_3929 -1.6 -4.1 conserved hypothetical protein compare
Psyr_0918 -1.6 -7.5 ABC transporter compare
Psyr_5050 -1.6 -2.7 transcriptional regulator, LysR family compare
Psyr_4415 -1.6 -5.7 cobalt-factor II C20-methyltransferase / precorrin-2 C20-methyltransferase compare
Psyr_3601 -1.6 -1.0 conserved hypothetical protein compare
Psyr_0464 -1.6 -1.2 hypothetical protein compare
Psyr_2833 -1.6 -1.3 CDS compare
Psyr_0437 -1.6 -1.1 acyl carrier protein, putative compare
Psyr_4466 -1.6 -2.0 Thioredoxin compare
Psyr_4402 -1.6 -2.7 [LSU ribosomal protein L11P]-lysine N-methyltransferase compare
Psyr_2970 -1.6 -3.8 TPR repeat protein:TPR repeat protein compare
Psyr_1702 -1.6 -4.4 regulatory protein, LuxR compare
Psyr_2419 -1.6 -2.7 Protein of unknown function DUF480 compare
Psyr_2985 -1.5 -1.9 DNA-N1-methyladenine dioxygenase compare
Psyr_1395 -1.5 -3.2 virulence compare
Psyr_2277 -1.5 -4.1 ammonium transporter compare
Psyr_0044 -1.5 -1.1 transferase hexapeptide repeat protein compare
Psyr_3791 -1.5 -2.5 Helicase, C-terminal:DEAD/DEAH box helicase, N-terminal compare
Psyr_1257 -1.5 -5.1 2-isopropylmalate synthase compare
Psyr_4786 -1.5 -0.9 hypothetical protein compare
Psyr_2151 -1.5 -0.9 monosaccharide ABC transporter substrate-binding protein, CUT2 family compare


Specific Phenotypes

For 4 genes in this experiment