Experiment set2IT075 for Bifidobacterium breve UCC2003

Compare to:

CDM1 without Pyridoxamine

200 most important genes:

  gene name fitness t score description  
BBR_RS18735 -7.5 -20.5 hypothetical protein compare
BBR_RS11540 -7.2 -4.1 DUF1727 domain-containing protein compare
BBR_RS13040 -7.1 -4.9 CHAP domain-containing protein compare
BBR_RS10660 -7.1 -30.7 esterase compare
BBR_RS11020 -6.9 -11.6 ACT domain-containing protein compare
BBR_RS10445 -6.9 -14.1 HlyC/CorC family transporter compare
BBR_RS19240 -6.9 -15.4 LacI family transcriptional regulator compare
BBR_RS11025 -6.8 -17.1 aspartate-semialdehyde dehydrogenase compare
BBR_RS11015 -6.7 -12.0 aspartate kinase compare
BBR_RS19945 -6.6 -9.1 MarR family transcriptional regulator compare
BBR_RS18570 -6.6 -11.0 phosphoserine transaminase compare
BBR_RS17365 -6.6 -4.5 ABC transporter permease compare
BBR_RS19700 -6.5 -28.9 ATP-dependent chaperone ClpB compare
BBR_RS13035 -6.4 -3.6 ABC transporter permease compare
BBR_RS17990 -6.3 -12.9 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase compare
BBR_RS19535 -6.3 -9.7 homoserine kinase (EC 2.7.1.39) (from data) compare
BBR_RS19475 -6.2 -20.3 AEC family transporter compare
BBR_RS17375 -6.1 -7.3 amino acid ABC transporter ATP-binding protein compare
BBR_RS18955 -6.1 -15.3 bifunctional acetaldehyde-CoA/alcohol dehydrogenase compare
BBR_RS15680 -6.1 -6.0 succinate--CoA ligase subunit alpha compare
BBR_RS13205 -5.9 -16.1 PLP-dependent aminotransferase family protein compare
BBR_RS18565 -5.9 -2.6 CHAP domain-containing protein compare
BBR_RS17615 -5.8 -12.4 phosphoserine phosphatase SerB compare
BBR_RS12460 -5.8 -4.0 LacI family DNA-binding transcriptional regulator compare
BBR_RS20935 -5.7 -2.7 hypothetical protein compare
BBR_RS16425 -5.7 -5.0 DUF3071 domain-containing protein compare
BBR_RS16600 -5.7 -11.0 aconitate hydratase AcnA compare
BBR_RS19355 -5.6 -2.5 tRNA-Gly compare
BBR_RS10900 -5.6 -3.8 molecular chaperone DnaK compare
BBR_RS18695 -5.6 -3.9 PRD domain-containing protein compare
BBR_RS12235 -5.6 -1.4 hypothetical protein compare
BBR_RS16970 -5.5 -9.2 phosphoglycerate dehydrogenase compare
BBR_RS17370 -5.5 -10.5 ABC transporter substrate-binding protein compare
BBR_RS13030 -5.5 -6.6 cell division ATP-binding protein FtsE compare
BBR_RS18690 -5.5 -9.1 diacylglycerol kinase compare
BBR_RS14365 -5.4 -9.8 hypothetical protein compare
BBR_RS16820 -5.4 -4.8 RNA polymerase sigma factor RpoE compare
BBR_RS13735 -5.4 -1.4 Lon protease compare
BBR_RS11720 -5.4 -9.2 DUF2469 domain-containing protein compare
BBR_RS11595 -5.3 -6.3 50S ribosomal protein L9 compare
BBR_RS16750 -5.3 -7.4 ParA family protein compare
BBR_RS11210 -5.2 -5.1 phosphoenolpyruvate--protein phosphotransferase compare
BBR_RS13195 -5.2 -8.6 pyridoxal 5'-phosphate synthase lyase subunit PdxS compare
BBR_RS12995 -5.2 -9.9 4-hydroxy-tetrahydrodipicolinate synthase compare
BBR_RS19635 -5.1 -15.7 IclR family transcriptional regulator compare
BBR_RS15170 -5.1 -9.8 HlyC/CorC family transporter compare
BBR_RS14070 -5.1 -3.5 threonine synthase (EC 4.2.3.1) (from data) compare
BBR_RS11505 -5.0 -23.6 TetR/AcrR family transcriptional regulator compare
BBR_RS17135 -5.0 -2.6 RluA family pseudouridine synthase compare
BBR_RS11205 -4.9 -3.7 HPr family phosphocarrier protein compare
BBR_RS19165 -4.9 -3.4 phosphate ABC transporter substrate-binding protein PstS compare
BBR_RS10625 -4.9 -2.4 FHA domain-containing protein compare
BBR_RS15675 -4.9 -9.9 ADP-forming succinate--CoA ligase subunit beta compare
BBR_RS20430 -4.8 -6.5 hypothetical protein compare
BBR_RS15085 -4.8 -2.1 3-dehydroquinate synthase compare
BBR_RS16155 -4.7 -12.5 isocitrate dehydrogenase (NADP(+)) compare
BBR_RS19555 -4.6 -32.0 diaminopimelate decarboxylase (EC 4.1.1.20) (from data) compare
BBR_RS14215 -4.6 -4.1 peptidase compare
BBR_RS10620 -4.6 -5.4 phosphoprotein phosphatase compare
BBR_RS13700 -4.4 -12.8 diaminopimelate epimerase compare
BBR_RS14210 -4.4 -3.6 hypothetical protein compare
BBR_RS19190 -4.4 -8.9 3-deoxy-7-phosphoheptulonate synthase compare
BBR_RS16965 -4.4 -3.0 ATP-dependent DNA helicase compare
BBR_RS17460 -4.4 -11.5 TPM domain-containing protein compare
BBR_RS16675 -4.4 -5.2 prephenate dehydrogenase/arogenate dehydrogenase family protein compare
BBR_RS15180 -4.3 -10.0 long-chain fatty acid--CoA ligase compare
BBR_RS14625 -4.3 -8.7 pyrroline-5-carboxylate reductase compare
BBR_RS15080 -4.3 -2.9 chorismate synthase compare
BBR_RS13820 -4.3 -1.1 ATP-binding protein compare
BBR_RS12545 -4.3 -2.9 DUF4012 domain-containing protein compare
BBR_RS19470 -4.2 -23.9 succinyl-diaminopimelate desuccinylase compare
BBR_RS19740 -4.2 -20.8 DUF2142 domain-containing protein compare
BBR_RS15070 -4.1 -4.0 endolytic transglycosylase MltG compare
BBR_RS17640 -4.1 -4.0 DNA-directed RNA polymerase subunit omega compare
BBR_RS18700 -4.1 -10.7 PTS beta-glucoside transporter subunit EIIBCA compare
BBR_RS11515 -4.1 -21.3 ammonium transporter compare
BBR_RS16555 -4.1 -1.0 DNA translocase FtsK compare
BBR_RS19265 -4.0 -12.6 pyrrolidone-carboxylate peptidase compare
BBR_RS15805 -4.0 -8.5 prolipoprotein diacylglyceryl transferase compare
BBR_RS16610 -4.0 -6.0 hypothetical protein compare
BBR_RS16605 -3.9 -10.2 hypothetical protein compare
BBR_RS17290 -3.9 -10.8 Fused ATP-binding protein and permease of ABC transporter compare
BBR_RS18725 -3.9 -4.4 ribonuclease HI compare
BBR_RS14260 -3.9 -1.4 ABC transporter ATP-binding protein compare
BBR_RS12660 -3.9 -12.5 EpsG family protein compare
BBR_RS13125 -3.9 -1.3 ABC transporter permease compare
BBR_RS10740 -3.9 -2.2 tRNA-Gly compare
BBR_RS12900 -3.8 -3.1 DeoR/GlpR transcriptional regulator compare
BBR_RS19120 -3.8 -12.8 helicase compare
BBR_RS19160 -3.8 -1.4 phosphate ABC transporter permease subunit PstC compare
BBR_RS16670 -3.8 -4.7 hypothetical protein compare
BBR_RS14370 -3.7 -2.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
BBR_RS19760 -3.7 -2.8 polysaccharide ABC transporter ATPase compare
BBR_RS18035 -3.7 -3.3 oligoribonuclease compare
BBR_RS15520 -3.7 -3.6 shikimate 5-dehydrogenase compare
BBR_RS13740 -3.7 -6.2 DUF3052 domain-containing protein compare
BBR_RS19755 -3.7 -17.3 glycosyl transferase compare
BBR_RS16540 -3.6 -5.3 XRE family transcriptional regulator compare
BBR_RS17905 -3.6 -24.1 2-hydroxyglutaryl-CoA dehydratase activator compare
BBR_RS16975 -3.6 -4.4 transcriptional repressor NrdR compare
BBR_RS16430 -3.6 -3.3 nucleotide pyrophosphatase compare
BBR_RS19540 -3.5 -2.4 homoserine dehydrogenase compare
BBR_RS18745 -3.5 -1.7 bifunctional riboflavin kinase/FMN adenylyltransferase compare
BBR_RS17455 -3.5 -10.6 DNA-binding response regulator compare
BBR_RS12760 -3.5 -10.2 hypothetical protein compare
BBR_RS13910 -3.5 -1.5 arginine repressor compare
BBR_RS20450 -3.4 -18.6 murein biosynthesis integral membrane protein MurJ compare
BBR_RS16020 -3.4 -2.7 hypothetical protein compare
BBR_RS10910 -3.4 -14.5 molecular chaperone DnaJ compare
BBR_RS12810 -3.3 -12.2 hypothetical protein compare
BBR_RS19155 -3.3 -9.0 phosphate ABC transporter, permease protein PstA compare
BBR_RS16255 -3.3 -3.6 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE compare
BBR_RS12175 -3.3 -8.7 TetR/AcrR family transcriptional regulator compare
BBR_RS16250 -3.2 -3.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB compare
BBR_RS15090 -3.1 -1.1 type II 3-dehydroquinate dehydratase compare
BBR_RS12635 -3.1 -16.7 polysaccharide biosynthesis protein compare
BBR_RS13070 -3.1 -1.6 glutamine--fructose-6-phosphate transaminase (isomerizing) compare
BBR_RS20465 -3.1 -10.6 chromosome partitioning protein compare
BBR_RS19055 -3.1 -1.7 ferredoxin family protein compare
BBR_RS15845 -3.0 -1.1 hypothetical protein compare
BBR_RS11355 -3.0 -9.6 hypothetical protein compare
BBR_RS14330 -3.0 -2.1 glycogen debranching enzyme GlgX compare
BBR_RS14205 -2.9 -3.3 hypothetical protein compare
BBR_RS13805 -2.9 -2.4 hypothetical protein compare
BBR_RS14075 -2.9 -7.5 glutamate-5-semialdehyde dehydrogenase compare
BBR_RS15915 -2.9 -1.0 type II toxin-antitoxin system antitoxin, RelB/DinJ family compare
BBR_RS12705 -2.9 -12.4 hypothetical protein compare
BBR_RS16940 -2.8 -4.5 hypothetical protein compare
BBR_RS15455 -2.8 -1.6 orotate phosphoribosyltransferase compare
BBR_RS16845 -2.8 -1.9 bifunctional folylpolyglutamate synthase/dihydrofolate synthase compare
BBR_RS12375 -2.8 -1.6 pantetheine-phosphate adenylyltransferase compare
BBR_RS11500 -2.8 -11.3 glycosyltransferase family 2 protein compare
BBR_RS19260 -2.7 -17.9 hypothetical protein compare
BBR_RS19390 -2.7 -1.5 hypothetical protein compare
BBR_RS10720 -2.7 -13.4 PDZ domain-containing protein compare
BBR_RS19125 -2.7 -10.6 hypothetical protein compare
BBR_RS13835 -2.6 -8.6 FAD-dependent oxidoreductase compare
BBR_RS15860 -2.6 -0.9 DUF2316 domain-containing protein compare
BBR_RS19050 -2.6 -14.9 succinyldiaminopimelate transaminase compare
BBR_RS15335 -2.6 -4.6 hypothetical protein compare
BBR_RS12700 -2.6 -9.0 hypothetical protein compare
BBR_RS14655 -2.5 -5.0 AraC family transcriptional regulator compare
BBR_RS12770 -2.5 -3.3 hypothetical protein compare
BBR_RS13770 -2.5 -2.8 DNA repair protein RecO compare
BBR_RS17515 -2.5 -9.4 hypothetical protein compare
BBR_RS11220 -2.5 -11.2 YbhB/YbcL family Raf kinase inhibitor-like protein compare
BBR_RS12630 -2.5 -13.6 glycosyltransferase family 1 protein compare
BBR_RS13200 -2.5 -7.5 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT compare
BBR_RS15650 -2.5 -2.7 Holliday junction resolvase compare
BBR_RS16240 -2.5 -5.9 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD compare
BBR_RS14230 -2.5 -5.2 HAMP domain-containing histidine kinase compare
BBR_RS19795 -2.5 -17.1 hypothetical protein compare
BBR_RS20460 -2.5 -5.1 chromosome partitioning protein ParB compare
BBR_RS20920 -2.5 -3.4 hypothetical protein compare
BBR_RS11470 -2.5 -1.5 6-phosphogluconolactonase compare
BBR_RS17865 -2.5 -3.9 MarR family transcriptional regulator compare
BBR_RS15360 -2.4 -2.5 hypothetical protein compare
BBR_RS12855 -2.4 -5.0 glycine cleavage system protein H compare
BBR_RS14265 -2.4 -5.3 Solute-binding protein of ABC transporter system for metals compare
BBR_RS12640 -2.4 -10.6 glycosyl transferase compare
BBR_RS11680 -2.4 -12.5 23S rRNA methyltransferase compare
BBR_RS20775 -2.4 -2.0 DUF4230 domain-containing protein compare
BBR_RS10555 -2.4 -1.9 DUF3073 domain-containing protein compare
BBR_RS12645 -2.4 -7.6 acyltransferase compare
BBR_RS15130 -2.3 -1.5 metal-sulfur cluster assembly factor compare
BBR_RS11675 -2.3 -1.6 hypothetical protein compare
BBR_RS19645 -2.3 -8.5 RNA degradosome polyphosphate kinase compare
BBR_RS14540 -2.3 -3.9 Na+/H+ antiporter NhaA compare
BBR_RS15230 -2.3 -5.4 elongation factor 4 compare
BBR_RS20420 -2.2 -9.8 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA compare
BBR_RS13490 -2.2 -1.0 30S ribosomal protein S7 compare
BBR_RS19445 -2.2 -15.8 glutamate 5-kinase compare
BBR_RS18215 -2.1 -7.3 AI-2E family transporter compare
BBR_RS12980 -2.1 -12.1 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS13750 -2.1 -2.2 DivIVA domain-containing protein compare
BBR_RS11570 -2.0 -9.9 YggS family pyridoxal phosphate-dependent enzyme compare
BBR_RS18550 -2.0 -7.3 universal stress protein compare
BBR_RS12905 -2.0 -2.5 galactose-1-phosphate uridylyltransferase compare
BBR_RS17720 -2.0 -9.2 CRISPR-associated helicase/endonuclease Cas3 compare
BBR_RS18555 -2.0 -8.9 NlpC/P60 family protein compare
BBR_RS15355 -2.0 -3.5 DUF3800 domain-containing protein compare
BBR_RS12295 -2.0 -0.9 RNA-binding protein compare
BBR_RS14775 -2.0 -5.1 hypothetical protein compare
BBR_RS13390 -2.0 -3.3 hypothetical protein compare
BBR_RS19370 -2.0 -4.7 type I polyketide synthase compare
BBR_RS16905 -2.0 -3.5 hypothetical protein compare
BBR_RS16220 -1.9 -0.7 DNA cytosine methyltransferase compare
BBR_RS19105 -1.9 -6.4 FmdB family transcriptional regulator compare
BBR_RS20440 -1.9 -4.0 NUDIX hydrolase compare
BBR_RS18375 -1.9 -9.3 ATP-dependent helicase compare
BBR_RS12975 -1.9 -10.9 ATP-dependent DNA helicase UvrD/REP family compare
BBR_RS13985 -1.9 -4.2 membrane protein compare
BBR_RS11770 -1.9 -3.4 chorismate mutase compare
BBR_RS17860 -1.9 -13.1 ABC transporter ATP-binding protein compare
BBR_RS14280 -1.9 -1.7 dephospho-CoA kinase compare
BBR_RS14240 -1.9 -5.3 1,4-alpha-glucan branching protein GlgB compare
BBR_RS16655 -1.9 -5.0 tyrosine recombinase XerC compare
BBR_RS14190 -1.9 -7.4 transcriptional regulator compare
BBR_RS12665 -1.9 -9.3 acyltransferase compare
BBR_RS12045 -1.8 -4.8 hypothetical protein compare


Specific Phenotypes

For 4 genes in this experiment

For nutrient dropout no Pyridoxamine in Bifidobacterium breve UCC2003

For nutrient dropout no Pyridoxamine across organisms