Experiment set2IT074 for Pseudomonas syringae pv. syringae B728a

Compare to:

apoplastic, sonication recovery; Green bean

200 most important genes:

  gene name fitness t score description  
Psyr_4580 -4.9 -2.8 anthranilate phosphoribosyltransferase compare
Psyr_0473 -4.8 -4.7 Methionine biosynthesis MetW compare
Psyr_4270 -4.7 -6.4 serine hydroxymethyltransferase compare
Psyr_1984 -4.7 -2.7 3-isopropylmalate dehydratase, small subunit compare
Psyr_4609 -4.5 -10.6 anthranilate synthase, component I compare
Psyr_4151 -4.5 -0.9 Phosphocarrier HPr protein compare
Psyr_1669 -4.4 -7.4 O-succinylhomoserine sulfhydrylase compare
Psyr_4893 -4.3 -1.2 imidazole glycerol phosphate synthase subunit hisF compare
Psyr_0529 -4.2 -2.9 Glycosyl transferase, group 1 compare
Psyr_0951 -4.2 -2.0 UBA/THIF-type NAD/FAD binding fold:MoeZ/MoeB compare
Psyr_1614 -4.2 -2.3 lipid A biosynthesis acyltransferase compare
Psyr_1985 -4.2 -6.4 3-isopropylmalate dehydrogenase compare
Psyr_0915 -4.0 -11.5 NAD-dependent epimerase/dehydratase compare
Psyr_1668 -4.0 -4.7 amidophosphoribosyltransferase compare
Psyr_4407 -3.9 -2.2 phosphoribosylamine--glycine ligase compare
Psyr_0034 -3.9 -2.7 tryptophan synthase, beta chain compare
Psyr_1983 -3.9 -5.7 3-isopropylmalate dehydratase, large subunit compare
Psyr_0378 -3.8 -3.7 Glycosyl transferase, family 2 compare
Psyr_4133 -3.8 -13.2 histidinol dehydrogenase compare
Psyr_0847 -3.8 -7.7 acetolactate synthase, small subunit compare
Psyr_0033 -3.8 -3.7 tryptophan synthase, alpha chain compare
Psyr_0474 -3.8 -9.3 homoserine O-acetyltransferase compare
Psyr_4627 -3.7 -1.9 dimethyladenosine transferase compare
Psyr_1613 -3.6 -3.5 septum site-determining protein MinC compare
Psyr_0576 -3.6 -4.0 ATP phosphoribosyltransferase regulatory subunit, putative compare
Psyr_1408 -3.6 -1.8 Holliday junction endonuclease RuvC compare
Psyr_0025 -3.6 -4.7 shikimate dehydrogenase compare
Psyr_1269 -3.6 -2.4 phosphoribosylformylglycinamidine synthase compare
Psyr_3008 -3.5 -5.3 Undecaprenyl-diphosphatase compare
Psyr_3958 -3.5 -11.9 RNA polymerase, sigma-24 subunit, RpoE compare
Psyr_4897 -3.5 -3.6 imidazoleglycerol-phosphate dehydratase compare
Psyr_0531 -3.5 -1.7 LmbE-like protein compare
Psyr_0704 -3.4 -8.9 glutamate 5-kinase compare
Psyr_0167 -3.4 -3.6 hypothetical protein compare
Psyr_1350 -3.3 -4.2 site-2 protease, Metallo peptidase, MEROPS family M50B compare
Psyr_1056 -3.3 -4.5 Poly(beta-D-mannuronate) lyase compare
Psyr_0219 -3.3 -10.5 phosphomannomutase compare
Psyr_4087 -3.2 -0.9 Protein of unknown function DUF520 compare
Psyr_3701 -3.2 -2.3 thioredoxin, putative compare
Psyr_4155 -3.2 -1.8 Protein of unknown function DUF615 compare
Psyr_0914 -3.1 -11.1 Glycosyl transferase, group 1 compare
Psyr_4991 -3.1 -1.7 hypothetical protein compare
Psyr_1212 -3.0 -1.8 type III secretion protein HrpO compare
Psyr_0848 -3.0 -9.2 ketol-acid reductoisomerase compare
Psyr_1968 -3.0 -2.8 RND efflux system, outer membrane lipoprotein, NodT compare
Psyr_1198 -3.0 -2.2 type III secretion protein HrpF compare
Psyr_1941 -2.9 -1.5 ATP-binding region, ATPase-like:Histidine kinase compare
Psyr_4896 -2.9 -6.8 imidazole glycerol phosphate synthase subunit hisH compare
Psyr_3459 -2.9 -1.8 Helix-turn-helix, Fis-type compare
Psyr_0826 -2.9 -4.8 glucose-6-phosphate isomerase compare
Psyr_0469 -2.9 -8.6 dihydroxyacid dehydratase compare
Psyr_3637 -2.9 -12.5 Glycosyl transferase, family 4 compare
Psyr_1410 -2.9 -3.4 Holliday junction DNA helicase RuvB compare
Psyr_5029 -2.9 -2.3 Rubredoxin-type Fe(Cys)4 protein compare
Psyr_0846 -2.8 -10.3 acetolactate synthase, large subunit compare
Psyr_1719 -2.8 -1.8 conserved hypothetical protein compare
Psyr_3906 -2.8 -1.5 regulatory protein, DeoR compare
Psyr_1748 -2.8 -5.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
Psyr_1667 -2.8 -6.0 Colicin V production protein compare
Psyr_3581 -2.8 -5.8 ribosomal large subunit pseudouridine synthase B compare
Psyr_0377 -2.8 -7.8 Periplasmic glucan biosynthesis protein, MdoG compare
Psyr_0575 -2.7 -2.6 protease FtsH subunit HflC compare
Psyr_3554 -2.7 -1.0 Carbon storage regulator compare
Psyr_1210 -2.7 -5.6 type III secretion protein HrcQa compare
Psyr_1663 -2.7 -3.5 phosphoribosylanthranilate isomerase compare
Psyr_0528 -2.7 -1.6 Carbamoyltransferase compare
Psyr_0532 -2.7 -5.1 conserved hypothetical protein compare
Psyr_3567 -2.6 -2.1 L-arginine ABC transporter ATP-binding protein / L-ornithine ABC transporter ATP-binding protein compare
Psyr_4852 -2.6 -4.8 D-3-phosphoglycerate dehydrogenase compare
Psyr_0954 -2.6 -2.1 Protein of unknown function UPF0153 compare
Psyr_4194 -2.5 -4.3 DnaJ central region:Heat shock protein DnaJ, N-terminal:Chaperone DnaJ, C-terminal compare
Psyr_4581 -2.5 -1.7 anthranilate synthase, component II compare
Psyr_4144 -2.5 -0.9 Protein of unknown function DUF1239 compare
Psyr_5132 -2.5 -1.5 Glucose-inhibited division protein A subfamily compare
Psyr_4404 -2.5 -2.5 tRNA-U20-dihydrouridine synthase compare
Psyr_3179 -2.4 -2.8 DNA translocase FtsK compare
Psyr_0132 -2.4 -3.2 conserved hypothetical protein compare
Psyr_2039 -2.4 -1.5 Fimbrial protein compare
Psyr_4130 -2.4 -7.6 Peptidase S1, chymotrypsin:PDZ/DHR/GLGF compare
Psyr_3287 -2.4 -2.0 DNA topoisomerase I compare
Psyr_0014 -2.4 -3.2 lipid A biosynthesis acyltransferase compare
Psyr_4369 -2.4 -4.9 glutamate-5-semialdehyde dehydrogenase compare
Psyr_4894 -2.4 -5.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
Psyr_0827 -2.4 -3.4 pantothenate synthetase compare
Psyr_3552 -2.3 -2.3 Divalent cation transporter compare
Psyr_2613 -2.3 -6.2 Cyclic peptide transporter compare
Psyr_0920 -2.3 -14.3 Glycosyl transferase, group 1 compare
Psyr_1111 -2.3 -1.2 Response regulator receiver:Transcriptional regulatory protein, C-terminal compare
Psyr_3023 -2.3 -3.5 conserved hypothetical protein compare
Psyr_4140 -2.3 -1.9 Protein of unknown function DUF140 compare
Psyr_0534 -2.3 -10.8 membrane protein, putative compare
Psyr_2312 -2.3 -0.9 Protein of unknown function DUF24 compare
Psyr_4018 -2.3 -7.0 Formyltetrahydrofolate deformylase compare
Psyr_1556 -2.3 -2.0 hypothetical protein compare
Psyr_2848 -2.3 -4.4 hypothetical protein compare
Psyr_1670 -2.3 -1.8 Short-chain dehydrogenase/reductase SDR compare
Psyr_1515 -2.3 -5.0 hypothetical protein compare
Psyr_5050 -2.3 -3.0 transcriptional regulator, LysR family compare
Psyr_4408 -2.2 -8.3 Response regulator receiver:ATP-binding region, ATPase-like:Histidine kinase A, N-terminal:Histidine kinase:Histidine kinase compare
Psyr_3293 -2.2 -1.7 UspA compare
Psyr_0917 -2.2 -3.3 ABC-2 compare
Psyr_0259 -2.2 -2.7 Osmolarity sensor protein envZ compare
Psyr_0535 -2.2 -2.4 toluene tolerance protein, putative compare
Psyr_1211 -2.1 -4.6 type III secretion protein HrpP compare
Psyr_0385 -2.1 -2.6 phosphoribosyl-ATP pyrophosphatase compare
Psyr_1401 -2.1 -4.5 Histidine triad (HIT) protein compare
Psyr_5067 -2.1 -5.9 conserved hypothetical protein compare
Psyr_3636 -2.1 -7.5 Polysaccharide biosynthesis protein CapD compare
Psyr_RNA28 -2.1 -1.2 tRNA-Val compare
Psyr_0464 -2.1 -1.5 hypothetical protein compare
Psyr_3043 -2.1 -4.5 Paraquat-inducible protein A compare
Psyr_2077 -2.1 -4.2 regulatory protein, LysR:LysR, substrate-binding protein compare
Psyr_1973 -2.1 -2.4 Aspartate transaminase compare
Psyr_4740 -2.1 -4.3 thiazole-phosphate synthase compare
Psyr_3626 -2.0 -4.4 transcriptional regulator, MarR family compare
Psyr_0557 -2.0 -3.4 phosphoserine phosphatase compare
Psyr_2347 -2.0 -2.3 hypothetical protein compare
Psyr_3394 -2.0 -3.1 conserved hypothetical protein compare
Psyr_4134 -2.0 -4.9 ATP phosphoribosyltransferase (homohexameric) compare
Psyr_4100 -2.0 -4.9 D-alanine--D-alanine ligase compare
Psyr_0936 -2.0 -6.9 Glycosyl transferase, group 1 compare
Psyr_5129 -2.0 -3.6 chromosome segregation DNA-binding protein compare
Psyr_0579 -2.0 -9.1 RNAse R compare
Psyr_1196 -2.0 -1.5 type III secretion protein HrpD compare
Psyr_1337 -2.0 -2.3 Conserved hypothetical protein ArsC related protein compare
Psyr_3674 -1.9 -1.9 Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase compare
Psyr_0919 -1.9 -8.6 Chromosome segregation ATPase-like protein compare
Psyr_4132 -1.9 -5.2 histidinol phosphate aminotransferase apoenzyme compare
Psyr_1251 -1.9 -3.5 quinoprotein compare
Psyr_1334 -1.9 -1.3 Cysteine desulfuration protein SufE compare
Psyr_3852 -1.9 -3.3 lipoprotein SlyB, putative compare
Psyr_0923 -1.9 -5.2 hypothetical protein compare
Psyr_4336 -1.9 -2.5 ribosomal large subunit pseudouridine synthase E compare
Psyr_5055 -1.9 -3.6 YeeE/YedE compare
Psyr_3199 -1.9 -2.8 NADH dehydrogenase subunit D / NADH dehydrogenase subunit C compare
Psyr_4363 -1.9 -4.0 membrane-bound lytic murein transglycosylase B compare
Psyr_2255 -1.9 -1.7 ABC transporter compare
Psyr_0574 -1.9 -4.9 protease FtsH subunit HflK compare
Psyr_4940 -1.9 -1.9 3'(2'),5'-bisphosphate nucleotidase compare
Psyr_1411 -1.8 -2.6 4-hydroxybenzoyl-CoA thioesterase compare
Psyr_0176 -1.8 -1.5 conserved hypothetical protein compare
Psyr_0758 -1.8 -12.5 beta-fructofuranosidase compare
Psyr_1542 -1.8 -5.9 quinolinate synthetase compare
Psyr_4566 -1.8 -7.3 Peptidase M23B compare
Psyr_3601 -1.8 -1.1 conserved hypothetical protein compare
Psyr_3193 -1.8 -2.1 Transcription factor jumonji, jmjC compare
Psyr_3644 -1.8 -2.8 prephenate dehydrogenase compare
Psyr_1140 -1.8 -2.8 Disulfide bond formation protein DsbB compare
Psyr_0889 -1.8 -2.2 SpoVT/AbrB-like protein compare
Psyr_0350 -1.8 -2.0 ABC transporter compare
Psyr_1875 -1.8 -1.5 Enoyl-CoA hydratase/isomerase compare
Psyr_4902 -1.8 -1.6 Protein of unknown function DUF495 compare
Psyr_1055 -1.8 -9.5 Membrane bound O-acyl transferase, MBOAT compare
Psyr_4418 -1.7 -1.7 Precorrin-6Y C5,15-methyltransferase (decarboxylating) compare
Psyr_2188 -1.7 -3.2 Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer:CHASE3 compare
Psyr_2277 -1.7 -4.2 ammonium transporter compare
Psyr_1218 -1.7 -6.1 type III helper protein HrpK1 compare
Psyr_1373 -1.7 -1.2 Peptidoglycan-binding LysM:Peptidase M23B compare
Psyr_2562 -1.7 -1.4 hypothetical protein compare
Psyr_0918 -1.7 -7.2 ABC transporter compare
Psyr_1216 -1.7 -4.6 type III secretion outer membrane protein PopN compare
Psyr_0454 -1.7 -4.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase apoenzyme compare
Psyr_1217 -1.7 -2.6 Sigma-70 region 2:Sigma-70 region 4 compare
Psyr_1489 -1.7 -4.4 hypothetical protein compare
Psyr_1200 -1.7 -6.9 outer-membrane type III secretion protein HrcC compare
Psyr_1650 -1.6 -1.9 aminodeoxychorismate lyase apoprotein compare
Psyr_4686 -1.6 -3.2 8-amino-7-oxononanoate synthase compare
Psyr_4687 -1.6 -5.0 biotin synthase compare
Psyr_1907 -1.6 -1.9 GTP cyclohydrolase I compare
Psyr_4128 -1.6 -4.5 sulfate adenylyltransferase subunit 2 compare
Psyr_2823 -1.6 -0.9 hypothetical protein compare
Psyr_3213 -1.6 -1.8 Propeptide, PepSY amd peptidase M4 compare
Psyr_0041 -1.6 -1.9 Protein of unknown function DUF1161 compare
Psyr_1197 -1.6 -3.0 type III secretion protein HrpE compare
Psyr_4402 -1.6 -2.0 [LSU ribosomal protein L11P]-lysine N-methyltransferase compare
Psyr_4262 -1.6 -1.0 lipoprotein, putative compare
Psyr_4403 -1.6 -2.7 conserved hypothetical protein compare
Psyr_1315 -1.6 -3.1 lipoprotein, putative compare
Psyr_4125 -1.6 -2.4 Protein of unknown function DUF1043 compare
Psyr_0386 -1.6 -2.1 phosphoribosyl-AMP cyclohydrolase compare
Psyr_1418 -1.5 -1.7 Radical SAM compare
Psyr_0699 -1.5 -1.9 CDS compare
Psyr_1720 -1.5 -2.6 Protein of unknown function DUF58 compare
Psyr_0616 -1.5 -1.6 conserved domain protein compare
Psyr_1249 -1.5 -3.2 histidyl-tRNA synthetase compare
Psyr_4224 -1.5 -1.2 conserved hypothetical protein compare
Psyr_3152 -1.5 -1.0 hypothetical protein compare
Psyr_3143 -1.5 -1.8 general secretion pathway protein M, putative compare
Psyr_4882 -1.5 -3.8 protein translocase subunit secB compare
Psyr_0478 -1.5 -5.2 pilus retraction ATPase PilT compare
Psyr_2855 -1.5 -3.1 methionine synthase (B12-independent) compare
Psyr_3435 -1.5 -2.8 chemotaxis phosphatase, CheZ compare
Psyr_3555 -1.5 -1.1 aspartate kinase compare
Psyr_3558 -1.5 -2.2 6,7-dimethyl-8-ribityllumazine synthase compare
Psyr_0119 -1.5 -3.0 CDS compare
Psyr_1054 -1.5 -4.2 alginate biosynthesis protein AlgJ compare
Psyr_2256 -1.5 -2.2 ABC transporter compare
Psyr_3694 -1.5 -2.3 MazG, bacterial compare
Psyr_2942 -1.5 -2.5 amino acid ABC transporter ATP-binding protein, PAAT family compare
Psyr_0170 -1.5 -1.3 heat shock protein Hsp15 compare


Specific Phenotypes

For 3 genes in this experiment