Experiment set2IT074 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Asparagine carbon source

200 most important genes:

  gene name fitness t score description  
RR42_RS16265 -7.9 -5.5 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS05860 -6.1 -4.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14390 -5.8 -4.0 3-isopropylmalate dehydratase compare
RR42_RS19005 -5.7 -4.0 3-dehydroquinate synthase compare
RR42_RS16255 -5.7 -6.8 sulfate adenylyltransferase compare
RR42_RS14365 -5.6 -3.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS06485 -5.6 -6.6 chorismate synthase compare
RR42_RS30655 -5.3 -5.1 LysR family transcriptional regulator compare
RR42_RS16250 -5.1 -7.0 sulfate adenylyltransferase compare
RR42_RS28290 -4.9 -5.8 DNA-binding protein compare
RR42_RS18305 -4.9 -4.7 anthranilate phosphoribosyltransferase compare
RR42_RS04475 -4.8 -8.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS11770 -4.7 -3.2 cyclase compare
RR42_RS18295 -4.7 -10.4 anthranilate synthase component I compare
RR42_RS14320 -4.6 -5.5 O-succinylhomoserine sulfhydrylase compare
RR42_RS01385 -4.6 -4.1 5,10-methylenetetrahydrofolate reductase compare
RR42_RS07555 -4.6 -3.1 potassium transporter Kup compare
RR42_RS16280 -4.5 -8.2 transcriptional regulator compare
RR42_RS19010 -4.4 -7.2 shikimate kinase compare
RR42_RS01160 -4.4 -8.8 homoserine O-acetyltransferase compare
RR42_RS30660 -4.3 -9.3 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
RR42_RS33255 -4.3 -5.0 protein-tyrosine phosphatase compare
RR42_RS05955 -4.2 -1.9 hypothetical protein compare
RR42_RS04535 -4.1 -5.6 cysteine synthase compare
RR42_RS14400 -3.9 -5.2 isopropylmalate isomerase compare
RR42_RS14385 -3.9 -6.9 3-isopropylmalate dehydrogenase compare
RR42_RS17645 -3.8 -7.6 shikimate dehydrogenase compare
RR42_RS16245 -3.8 -5.2 uroporphyrin-III methyltransferase compare
RR42_RS01290 -3.7 -7.1 thiamine biosynthesis protein ThiC compare
RR42_RS16270 -3.6 -8.2 sulfite reductase compare
RR42_RS30640 -3.4 -8.6 DNA mismatch repair protein MutT compare
RR42_RS21220 -3.3 -2.1 iron transporter FeoB compare
RR42_RS33260 -3.2 -8.7 multidrug MFS transporter compare
RR42_RS04470 -3.1 -6.1 prephenate dehydrogenase compare
RR42_RS01845 -3.0 -1.9 glycerol-3-phosphate dehydrogenase compare
RR42_RS04460 -2.8 -6.3 chorismate mutase compare
RR42_RS14360 -2.7 -1.6 tryptophan synthase subunit alpha compare
RR42_RS16275 -2.6 -3.6 membrane protein compare
RR42_RS20195 -2.6 -1.6 ATPase F0F1 compare
RR42_RS18300 -2.6 -5.5 anthranilate synthase subunit II compare
RR42_RS01775 -2.5 -6.4 glutamate--cysteine ligase compare
RR42_RS16240 -2.5 -1.5 cobalamin biosynthesis protein CbiX compare
RR42_RS02705 -2.5 -2.7 Holliday junction DNA helicase RuvA compare
RR42_RS03940 -2.3 -2.0 membrane protein compare
RR42_RS07615 -2.2 -2.1 3-ketoacyl-ACP reductase compare
RR42_RS08945 -2.2 -1.9 hypothetical protein compare
RR42_RS10920 -2.1 -2.8 hypothetical protein compare
RR42_RS15890 -2.1 -6.3 heme biosynthesis protein HemY compare
RR42_RS26935 -2.1 -5.3 farnesyl-diphosphate farnesyltransferase compare
RR42_RS33355 -2.1 -3.7 membrane protein compare
RR42_RS04700 -2.0 -1.5 ribonuclease G compare
RR42_RS33250 -2.0 -7.4 tyrosine protein kinase compare
RR42_RS18485 -2.0 -1.5 glutaredoxin compare
RR42_RS12040 -2.0 -8.3 MFS transporter compare
RR42_RS19090 -1.9 -2.1 cytochrome C compare
RR42_RS18850 -1.9 -3.6 preprotein translocase subunit TatC compare
RR42_RS15000 -1.9 -3.3 GTP cyclohydrolase compare
RR42_RS33240 -1.9 -10.8 GDP-L-fucose synthase compare
RR42_RS26900 -1.9 -3.0 enoyl-CoA hydratase compare
RR42_RS15895 -1.8 -7.6 uroporphyrinogen III methyltransferase compare
RR42_RS13040 -1.8 -5.3 iron transporter compare
RR42_RS31495 -1.7 -1.9 Cro/Cl family transcriptional regulator compare
RR42_RS02500 -1.7 -2.5 TetR family transcriptional regulator compare
RR42_RS33245 -1.7 -7.0 mannose-1-phosphate guanyltransferase compare
RR42_RS15795 -1.6 -5.3 spore coat protein compare
RR42_RS03910 -1.6 -2.2 (2Fe-2S)-binding protein compare
RR42_RS30975 -1.6 -3.4 blue copper protein compare
RR42_RS15050 -1.6 -8.6 DNA polymerase I compare
RR42_RS04145 -1.6 -1.5 peptidase A24 compare
RR42_RS15090 -1.6 -3.5 DNA helicase compare
RR42_RS17050 -1.6 -4.0 phosphoribosylglycinamide formyltransferase compare
RR42_RS14845 -1.5 -2.8 MarR family transcriptional regulator compare
RR42_RS17105 -1.5 -8.0 Clp protease ClpX compare
RR42_RS07365 -1.5 -2.3 pyruvate dehydrogenase compare
RR42_RS09085 -1.5 -1.5 C4-dicarboxylate ABC transporter permease compare
RR42_RS15775 -1.5 -5.1 N-acetylneuraminate synthase compare
RR42_RS03980 -1.4 -3.2 Fis family transcriptional regulator compare
RR42_RS07605 -1.4 -4.5 poly-beta-hydroxybutyrate polymerase compare
RR42_RS03990 -1.4 -4.8 aspartate:proton symporter Glt (from data) compare
RR42_RS14755 -1.4 -3.4 hypothetical protein compare
RR42_RS02775 -1.4 -2.4 molecular chaperone SurA compare
RR42_RS07565 -1.4 -6.6 transcription accessory protein compare
RR42_RS15740 -1.3 -2.4 hypothetical protein compare
RR42_RS32740 -1.3 -1.1 enoyl-CoA hydratase compare
RR42_RS33850 -1.3 -1.8 hypothetical protein compare
RR42_RS15410 -1.3 -3.6 membrane protein compare
RR42_RS17720 -1.3 -2.3 sugar kinase compare
RR42_RS17555 -1.3 -1.4 hypothetical protein compare
RR42_RS26200 -1.3 -1.9 hypothetical protein compare
RR42_RS05100 -1.3 -2.7 acetaldehyde dehydrogenase compare
RR42_RS06020 -1.3 -0.9 Fe-S cluster assembly transcriptional regulator IscR compare
RR42_RS00940 -1.3 -5.0 biotin synthase compare
RR42_RS33210 -1.3 -2.9 teichoic acid biosynthesis protein compare
RR42_RS03080 -1.3 -3.1 recombinase RecA compare
RR42_RS27700 -1.3 -1.4 hypothetical protein compare
RR42_RS01915 -1.2 -3.7 cytochrome C oxidase subunit I compare
RR42_RS18855 -1.2 -3.0 preprotein translocase compare
RR42_RS36105 -1.2 -3.3 MarR family transcriptional regulator compare
RR42_RS12550 -1.2 -2.6 hypothetical protein compare
RR42_RS37400 -1.2 -1.3 6-phosphogluconolactonase compare
RR42_RS28620 -1.2 -3.1 ABC transporter compare
RR42_RS31505 -1.2 -1.9 hypothetical protein compare
RR42_RS22355 -1.2 -2.1 ModE family transcriptional regulator compare
RR42_RS23515 -1.2 -4.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase compare
RR42_RS18020 -1.2 -2.8 ornithine acetyltransferase compare
RR42_RS04895 -1.2 -6.6 serine/threonine protein phosphatase compare
RR42_RS02380 -1.2 -5.0 FAD-linked oxidase compare
RR42_RS33235 -1.2 -5.6 GDP-mannose 4,6-dehydratase compare
RR42_RS09580 -1.2 -1.1 hypothetical protein compare
RR42_RS14585 -1.1 -3.2 L-PSP family endoribonuclease compare
RR42_RS01380 -1.1 -1.2 membrane protein compare
RR42_RS08000 -1.1 -1.2 hypothetical protein compare
RR42_RS20205 -1.1 -2.2 chromosome partitioning protein compare
RR42_RS03985 -1.1 -4.6 histidine kinase conserved
RR42_RS17390 -1.1 -3.4 ATP-dependent DNA helicase RecG compare
RR42_RS10515 -1.1 -2.7 fumarylacetoacetate hydrolase compare
RR42_RS25785 -1.1 -2.1 TetR family transcriptional regulator compare
RR42_RS11795 -1.1 -2.5 PEP synthetase regulatory protein compare
RR42_RS36450 -1.1 -1.4 acyl dehydratase compare
RR42_RS29525 -1.0 -2.4 hypothetical protein compare
RR42_RS37375 -1.0 -2.7 short-chain dehydrogenase compare
RR42_RS15785 -1.0 -5.1 glycosyl transferase family 28 compare
RR42_RS35895 -1.0 -2.4 PadR family transcriptional regulator compare
RR42_RS17590 -1.0 -1.0 16S rRNA methyltransferase compare
RR42_RS15790 -1.0 -3.9 aminotransferase class III compare
RR42_RS14790 -1.0 -4.8 cobalamin biosynthesis protein CobD compare
RR42_RS19085 -1.0 -1.2 cytochrome C biogenesis protein ResB compare
RR42_RS29780 -1.0 -2.6 hypothetical protein compare
RR42_RS21295 -1.0 -2.7 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS28885 -1.0 -3.4 membrane protein compare
RR42_RS07870 -1.0 -3.5 alkyl hydroperoxide reductase compare
RR42_RS09375 -1.0 -0.9 taurine dioxygenase compare
RR42_RS35875 -1.0 -6.4 UDP-galactose-4-epimerase compare
RR42_RS16620 -1.0 -2.4 hypothetical protein compare
RR42_RS12305 -1.0 -1.0 hypothetical protein compare
RR42_RS18385 -1.0 -1.5 hypothetical protein compare
RR42_RS17060 -1.0 -7.4 histidine kinase compare
RR42_RS27625 -1.0 -1.9 TetR family transcriptional regulator compare
RR42_RS12050 -1.0 -4.9 DNA polymerase compare
RR42_RS32525 -1.0 -2.8 sulfite dehydrogenase compare
RR42_RS17730 -1.0 -1.9 hypothetical protein compare
RR42_RS15035 -1.0 -2.6 ZIP zinc transporter compare
RR42_RS30545 -1.0 -2.1 cobalt-precorrin-6Y C(5)-methyltransferase compare
RR42_RS20370 -0.9 -0.9 pterin-4-alpha-carbinolamine dehydratase compare
RR42_RS21000 -0.9 -2.4 glycosyl transferase compare
RR42_RS32460 -0.9 -2.5 LysR family transcriptional regulator compare
RR42_RS06895 -0.9 -1.6 hypothetical protein compare
RR42_RS01435 -0.9 -1.1 short-chain dehydrogenase compare
RR42_RS04765 -0.9 -1.4 3-oxoacyl-ACP reductase compare
RR42_RS05075 -0.9 -2.2 aminocarboxymuconate-semialdehyde decarboxylase compare
RR42_RS31285 -0.9 -1.4 XRE family transcriptional regulator compare
RR42_RS08450 -0.9 -1.4 hypothetical protein compare
RR42_RS16260 -0.9 -0.5 phosphoadenosine phosphosulfate reductase compare
RR42_RS27045 -0.9 -1.9 hypothetical protein compare
RR42_RS29365 -0.9 -1.5 ArsR family transcriptional regulator compare
RR42_RS01255 -0.9 -3.6 lauroyl acyltransferase compare
RR42_RS32595 -0.9 -2.6 cytochrome o ubiquinol oxidase subunit I compare
RR42_RS01905 -0.9 -2.3 cytochrome C oxidase subunit II compare
RR42_RS22295 -0.9 -1.6 methionine sulfoxide reductase B compare
RR42_RS06570 -0.9 -1.9 3-hydroxybutyrate dehydrogenase compare
RR42_RS02810 -0.9 -1.5 acyl-phosphate glycerol 3-phosphate acyltransferase compare
RR42_RS17345 -0.9 -3.7 twitching motility protein PilT compare
RR42_RS32385 -0.9 -2.2 citrate synthase compare
RR42_RS12610 -0.9 -3.4 glutaminase compare
RR42_RS36120 -0.9 -3.4 LysR family transcriptional regulator compare
RR42_RS07225 -0.9 -1.1 hypothetical protein compare
RR42_RS33215 -0.9 -5.2 transferase compare
RR42_RS04205 -0.9 -1.7 glycine cleavage system regulatory protein compare
RR42_RS31245 -0.9 -1.4 membrane protein compare
RR42_RS00115 -0.9 -1.1 hypothetical protein compare
RR42_RS05920 -0.9 -1.8 HrcA family transcriptional regulator compare
RR42_RS32805 -0.8 -1.9 damage-inducible protein compare
RR42_RS14965 -0.8 -2.3 hypothetical protein compare
RR42_RS08525 -0.8 -1.4 hypothetical protein compare
RR42_RS16310 -0.8 -1.6 hypothetical protein compare
RR42_RS31140 -0.8 -1.6 hypothetical protein compare
RR42_RS30320 -0.8 -1.5 hypothetical protein compare
RR42_RS23635 -0.8 -2.5 flagellar assembly protein FliT compare
RR42_RS32235 -0.8 -3.5 hopanoid biosynthesis associated radical SAM protein HpnH compare
RR42_RS02045 -0.8 -5.0 GTPase compare
RR42_RS10415 -0.8 -0.9 hypothetical protein compare
RR42_RS16740 -0.8 -1.8 hypothetical protein compare
RR42_RS04710 -0.8 -2.2 50S rRNA methyltransferase compare
RR42_RS05290 -0.8 -1.9 ankyrin compare
RR42_RS31280 -0.8 -2.1 hypothetical protein compare
RR42_RS17260 -0.8 -1.8 ABC transporter ATP-binding protein compare
RR42_RS06630 -0.8 -1.5 integration host factor subunit alpha compare
RR42_RS13910 -0.8 -2.7 glutamate racemase compare
RR42_RS28145 -0.8 -1.6 LysR family transcriptional regulator compare
RR42_RS02250 -0.8 -1.8 GntR family transcriptional regulator compare
RR42_RS26135 -0.8 -2.1 aspartate ammonia-lyase compare
RR42_RS09630 -0.8 -2.0 hypothetical protein compare
RR42_RS11065 -0.8 -1.3 phenylacetic acid degradation protein compare
RR42_RS17885 -0.8 -3.0 ABC transporter permease compare
RR42_RS08175 -0.8 -0.8 hypothetical protein compare
RR42_RS13530 -0.8 -1.9 4-hydroxybenzoyl-CoA thioesterase compare
RR42_RS14395 -0.8 -1.0 entericidin compare
RR42_RS17620 -0.8 -2.6 phosphatidylglycerophosphatase compare
RR42_RS02085 -0.8 -2.5 RNA polymerase subunit sigma-54 compare
RR42_RS34395 -0.8 -1.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in carbon source experiments

For carbon source L-Asparagine across organisms