Experiment set2IT074 for Cupriavidus basilensis FW507-4G11

Compare to:

L-Asparagine carbon source

200 most detrimental genes:

  gene name fitness t score description  
RR42_RS21470 +1.7 2.0 hypothetical protein compare
RR42_RS05750 +1.6 3.0 fructose 2,6-bisphosphatase compare
RR42_RS29610 +1.4 1.7 cytochrome C2 compare
RR42_RS17805 +1.3 1.7 hypothetical protein compare
RR42_RS11580 +1.2 1.9 hypothetical protein compare
RR42_RS15640 +1.2 1.6 hypothetical protein compare
RR42_RS03085 +1.1 1.6 RecX family transcriptional regulator compare
RR42_RS28005 +1.1 2.2 phosphonate/organophosphate ester transporter subunit compare
RR42_RS35725 +1.0 1.3 flagellar biosynthesis protein FlgB compare
RR42_RS08220 +1.0 1.8 hypothetical protein compare
RR42_RS07140 +1.0 1.9 hypothetical protein compare
RR42_RS12020 +1.0 3.0 GCN5 family acetyltransferase compare
RR42_RS17495 +0.9 3.8 hypothetical protein compare
RR42_RS07155 +0.9 3.3 hypothetical protein compare
RR42_RS10280 +0.9 2.5 hypothetical protein compare
RR42_RS00655 +0.9 2.2 membrane protein compare
RR42_RS21850 +0.9 2.0 3-oxoadipate enol-lactonase compare
RR42_RS06740 +0.9 3.1 hypothetical protein compare
RR42_RS23305 +0.9 1.4 hypothetical protein compare
RR42_RS05780 +0.9 2.7 hypothetical protein compare
RR42_RS21455 +0.8 1.7 transposase compare
RR42_RS32710 +0.8 1.9 hypothetical protein compare
RR42_RS16565 +0.8 2.3 hypothetical protein compare
RR42_RS25650 +0.8 1.1 hypothetical protein compare
RR42_RS10565 +0.8 1.6 alpha/beta hydrolase compare
RR42_RS08550 +0.8 2.3 tail fiber protein compare
RR42_RS35110 +0.8 2.1 hypothetical protein compare
RR42_RS13420 +0.8 2.6 phosphohistidine phosphatase compare
RR42_RS34570 +0.8 1.8 hypothetical protein compare
RR42_RS31330 +0.8 1.4 LysR family transcriptional regulator compare
RR42_RS37110 +0.8 1.9 hypothetical protein compare
RR42_RS22570 +0.8 2.0 SAM-dependent methyltransferase compare
RR42_RS13830 +0.8 1.2 hypothetical protein compare
RR42_RS27035 +0.8 2.3 hypothetical protein compare
RR42_RS23595 +0.8 1.3 dTDP-4-dehydrorhamnose 3,5-epimerase compare
RR42_RS06880 +0.7 1.6 hypothetical protein compare
RR42_RS00440 +0.7 0.8 hypothetical protein compare
RR42_RS07115 +0.7 1.1 hypothetical protein compare
RR42_RS16175 +0.7 1.3 enoyl-CoA hydratase compare
RR42_RS22165 +0.7 0.9 hypothetical protein compare
RR42_RS08770 +0.7 0.8 2-nitropropane dioxygenase compare
RR42_RS05945 +0.7 1.4 thioredoxin compare
RR42_RS12880 +0.7 2.3 membrane protein compare
RR42_RS16360 +0.7 1.5 transposase compare
RR42_RS25510 +0.7 1.4 short-chain dehydrogenase compare
RR42_RS00360 +0.7 1.5 Asp/Glu/hydantoin racemase compare
RR42_RS33430 +0.7 1.9 LysR family transcriptional regulator compare
RR42_RS08480 +0.7 1.3 hypothetical protein compare
RR42_RS12125 +0.7 1.7 LuxR family transcriptional regulator compare
RR42_RS05905 +0.7 2.0 hypothetical protein compare
RR42_RS04560 +0.7 2.8 methionine ABC transporter permease compare
RR42_RS12860 +0.7 1.8 pseudouridine synthase compare
RR42_RS06720 +0.7 2.8 hypothetical protein compare
RR42_RS03685 +0.7 1.5 GTP cyclohydrolase compare
RR42_RS07090 +0.7 2.5 hypothetical protein compare
RR42_RS08880 +0.7 1.7 hypothetical protein compare
RR42_RS35295 +0.7 1.8 diguanylate cyclase compare
RR42_RS27065 +0.7 1.2 hypothetical protein compare
RR42_RS23140 +0.7 0.9 peptidylprolyl isomerase compare
RR42_RS17355 +0.7 0.6 hypothetical protein compare
RR42_RS04180 +0.7 1.3 methyltransferase compare
RR42_RS13865 +0.7 1.0 hypothetical protein compare
RR42_RS14235 +0.6 0.9 hypothetical protein compare
RR42_RS17490 +0.6 1.3 NADP transhydrogenase subunit alpha compare
RR42_RS26485 +0.6 1.6 2,5-dihydroxypyridine 5,6-dioxygenase compare
RR42_RS12325 +0.6 3.1 glutathione S-transferase compare
RR42_RS31900 +0.6 1.3 short-chain dehydrogenase compare
RR42_RS04675 +0.6 1.5 alkylhydroperoxidase compare
RR42_RS20010 +0.6 1.9 hypothetical protein compare
RR42_RS31965 +0.6 1.5 LuxR family transcriptional regulator compare
RR42_RS20260 +0.6 1.3 hypothetical protein compare
RR42_RS26775 +0.6 2.0 RNA polymerase subunit sigma-24 compare
RR42_RS36245 +0.6 1.5 excisionase compare
RR42_RS03020 +0.6 0.7 MarR family transcriptional regulator compare
RR42_RS26660 +0.6 2.0 LysR family transcriptional regulator compare
RR42_RS13625 +0.6 1.6 4-hydroxybenzoyl-CoA reductase compare
RR42_RS28200 +0.6 1.9 membrane protein compare
RR42_RS01365 +0.6 2.3 hypothetical protein compare
RR42_RS14840 +0.6 2.8 IclR family transcriptional regulator compare
RR42_RS22590 +0.6 0.8 organic hydroperoxide resistance protein compare
RR42_RS08620 +0.6 2.4 membrane protein compare
RR42_RS22030 +0.6 1.8 hypothetical protein compare
RR42_RS28165 +0.6 1.7 hypothetical protein compare
RR42_RS32670 +0.6 0.7 phenol hydroxylase compare
RR42_RS14405 +0.6 1.6 leucine/isoleucine/valine transporter ATP-binding subunit compare
RR42_RS28035 +0.6 3.2 ABC transporter substrate-binding protein compare
RR42_RS29750 +0.6 2.4 MarR family transcriptional regulator compare
RR42_RS32645 +0.6 1.1 2-keto-4-pentenoate hydratase compare
RR42_RS14220 +0.6 1.7 ferredoxin-NADP reductase compare
RR42_RS33870 +0.6 1.8 hypothetical protein compare
RR42_RS02805 +0.6 2.8 metal-dependent hydrolase compare
RR42_RS03785 +0.6 2.3 membrane protein compare
RR42_RS01630 +0.6 0.9 branched-chain amino acid ABC transporter ATP-binding protein compare
RR42_RS05755 +0.6 1.1 enoyl-CoA hydratase compare
RR42_RS09760 +0.6 1.3 hypothetical protein compare
RR42_RS05260 +0.6 1.9 purine permease compare
RR42_RS07995 +0.6 1.0 hypothetical protein compare
RR42_RS27765 +0.6 2.4 haloacid dehalogenase compare
RR42_RS26875 +0.6 1.4 LysR family transcriptional regulator compare
RR42_RS23120 +0.6 2.0 hypothetical protein compare
RR42_RS11635 +0.6 1.4 signal transduction protein compare
RR42_RS34535 +0.6 1.2 membrane protein compare
RR42_RS21690 +0.6 0.7 acetyltransferase compare
RR42_RS07030 +0.6 2.7 hypothetical protein compare
RR42_RS07130 +0.6 1.2 hypothetical protein compare
RR42_RS21720 +0.6 1.2 acetoin catabolism protein X compare
RR42_RS16575 +0.6 1.3 acyl-CoA dehydrogenase compare
RR42_RS35475 +0.6 3.3 thiosulfate sulfurtransferase compare
RR42_RS18945 +0.6 2.3 toluene tolerance protein compare
RR42_RS15080 +0.6 1.2 GntR family transcriptional regulator compare
RR42_RS29630 +0.6 2.0 hypothetical protein compare
RR42_RS02270 +0.6 1.1 hypothetical protein compare
RR42_RS34525 +0.6 2.0 type VI secretion protein VasK compare
RR42_RS07265 +0.6 1.1 hypothetical protein compare
RR42_RS06865 +0.6 1.6 hypothetical protein compare
RR42_RS06445 +0.6 1.8 NAD(P)H-quinone oxidoreductase compare
RR42_RS26050 +0.5 1.9 hypothetical protein compare
RR42_RS35220 +0.5 1.3 peptide ABC transporter ATP-binding protein compare
RR42_RS21150 +0.5 1.1 hypothetical protein compare
RR42_RS12085 +0.5 1.5 glyoxalase compare
RR42_RS28400 +0.5 0.7 CoA-transferase compare
RR42_RS04200 +0.5 1.7 peptidase M48 compare
RR42_RS23205 +0.5 0.7 hypothetical protein compare
RR42_RS09540 +0.5 2.4 twin-arginine translocation pathway signal protein compare
RR42_RS04810 +0.5 1.2 glycine/betaine ABC transporter permease compare
RR42_RS03530 +0.5 0.8 hypothetical protein compare
RR42_RS35360 +0.5 1.6 copper resistance protein CopC compare
RR42_RS27465 +0.5 3.4 ionic transporter y4hA compare
RR42_RS09710 +0.5 2.7 hypothetical protein compare
RR42_RS34425 +0.5 1.8 hypothetical protein compare
RR42_RS00270 +0.5 1.6 amino acid ABC transporter compare
RR42_RS05620 +0.5 1.0 esterase compare
RR42_RS16535 +0.5 1.1 hypothetical protein compare
RR42_RS08185 +0.5 0.7 hypothetical protein compare
RR42_RS05700 +0.5 2.4 hypothetical protein compare
RR42_RS06925 +0.5 0.9 hypothetical protein compare
RR42_RS15845 +0.5 0.7 biotin transporter BioY compare
RR42_RS16750 +0.5 1.3 transcriptional regulator compare
RR42_RS29425 +0.5 2.0 enoyl-CoA hydratase compare
RR42_RS27095 +0.5 0.7 hypothetical protein compare
RR42_RS14985 +0.5 0.9 30S ribosomal protein S21 compare
RR42_RS23040 +0.5 1.6 hypothetical protein compare
RR42_RS08350 +0.5 0.9 hypothetical protein compare
RR42_RS29230 +0.5 3.4 TetR family transcriptional regulator compare
RR42_RS20825 +0.5 1.4 addiction module antitoxin compare
RR42_RS23915 +0.5 1.5 hypothetical protein compare
RR42_RS37230 +0.5 2.7 hypothetical protein compare
RR42_RS06955 +0.5 2.6 hypothetical protein compare
RR42_RS07150 +0.5 0.6 hypothetical protein compare
RR42_RS32110 +0.5 2.1 peptide ABC transporter permease compare
RR42_RS07015 +0.5 2.0 hypothetical protein compare
RR42_RS01315 +0.5 1.5 GNAT family acetyltransferase compare
RR42_RS27695 +0.5 1.2 polyketide cyclase compare
RR42_RS31960 +0.5 1.2 biphenyl 2,3-dioxygenase compare
RR42_RS26995 +0.5 1.2 iron transporter compare
RR42_RS33035 +0.5 1.1 type IV secretion protein Rhs compare
RR42_RS25115 +0.5 2.6 IclR family transcriptional regulator compare
RR42_RS34745 +0.5 1.8 hypothetical protein compare
RR42_RS25455 +0.5 0.8 acetyl-CoA acetyltransferase compare
RR42_RS27790 +0.5 1.0 LuxR family transcriptional regulator compare
RR42_RS14480 +0.5 1.5 hypothetical protein compare
RR42_RS05425 +0.5 2.0 membrane protein compare
RR42_RS27745 +0.5 1.7 hypothetical protein compare
RR42_RS24500 +0.5 2.4 hypothetical protein compare
RR42_RS30445 +0.5 1.0 cation:proton antiporter compare
RR42_RS10245 +0.5 1.0 dehydratase compare
RR42_RS26560 +0.5 1.2 hypothetical protein compare
RR42_RS32735 +0.5 1.8 3-methylcrotonyl-CoA carboxylase compare
RR42_RS14990 +0.5 1.0 membrane protein compare
RR42_RS37245 +0.5 1.9 MazF family transcriptional regulator compare
RR42_RS20965 +0.5 1.2 transferase compare
RR42_RS32665 +0.5 1.8 phenol hydroxylase compare
RR42_RS13620 +0.5 0.6 ferredoxin compare
RR42_RS37180 +0.5 2.2 hypothetical protein compare
RR42_RS14905 +0.5 1.8 hypothetical protein compare
RR42_RS02185 +0.5 2.8 fumarate reductase compare
RR42_RS35020 +0.5 1.6 rubredoxin compare
RR42_RS06855 +0.5 1.7 hypothetical protein compare
RR42_RS08585 +0.5 1.1 baseplate assembly protein compare
RR42_RS17335 +0.5 1.5 DeoR family transcriptional regulator compare
RR42_RS34495 +0.5 2.4 glycosyl transferase compare
RR42_RS27440 +0.5 1.9 hypothetical protein compare
RR42_RS36395 +0.5 2.3 acyl-CoA dehydrogenase compare
RR42_RS25595 +0.5 1.6 alpha/beta hydrolase compare
RR42_RS09300 +0.5 0.8 aromatic ring-opening dioxygenase LigB compare
RR42_RS11520 +0.5 0.8 ABC transporter ATP-binding protein compare
RR42_RS29110 +0.5 1.4 peroxiredoxin compare
RR42_RS30105 +0.5 2.1 taurine dioxygenase compare
RR42_RS06255 +0.5 1.3 lipoprotein compare
RR42_RS15600 +0.5 2.1 glutathione S-transferase compare
RR42_RS09585 +0.5 1.7 Crp/Fnr family transcriptional regulator compare
RR42_RS00840 +0.5 1.7 short-chain dehydrogenase compare
RR42_RS27705 +0.5 1.2 NAD-dependent deacetylase compare
RR42_RS31625 +0.5 1.7 amino acid ABC transporter compare
RR42_RS11345 +0.5 2.3 acyl-CoA dehydrogenase compare
RR42_RS31490 +0.4 1.0 hypothetical protein compare
RR42_RS29870 +0.4 2.1 anhydrase compare
RR42_RS06830 +0.4 1.8 hypothetical protein compare
RR42_RS25720 +0.4 1.1 hypothetical protein compare
RR42_RS18560 +0.4 2.0 multidrug transporter MatE compare


Specific Phenotypes

None in this experiment

For Cupriavidus basilensis FW507-4G11 in carbon source experiments

For carbon source L-Asparagine across organisms