Experiment set2IT074 for Burkholderia phytofirmans PsJN

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m-Inositol carbon source

200 most important genes:

  gene name fitness t score description  
BPHYT_RS18320 -7.3 -8.7 orotate phosphoribosyltransferase compare
BPHYT_RS17680 -7.2 -5.0 imidazole glycerol phosphate synthase subunit HisF compare
BPHYT_RS33835 -7.2 -7.0 O-succinylhomoserine sulfhydrylase compare
BPHYT_RS06555 -6.9 -8.2 ketol-acid reductoisomerase compare
BPHYT_RS09500 -6.8 -8.1 glucose-6-phosphate isomerase compare
BPHYT_RS14915 -6.8 -8.1 phosphoserine aminotransferase compare
BPHYT_RS17395 -6.7 -2.8 anthranilate synthase subunit II compare
BPHYT_RS02610 -6.7 -6.5 glycerol-3-phosphate dehydrogenase [NAD(P)+] compare
BPHYT_RS17685 -6.6 -9.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
BPHYT_RS16245 -6.6 -6.4 phosphoribosylaminoimidazole carboxylase compare
BPHYT_RS33880 -6.5 -8.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
BPHYT_RS06545 -6.4 -10.6 acetolactate synthase compare
BPHYT_RS17400 -6.2 -9.3 anthranilate phosphoribosyltransferase compare
BPHYT_RS15920 -6.1 -11.0 argininosuccinate synthase compare
BPHYT_RS17670 -6.0 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
BPHYT_RS33875 -5.9 -10.5 tryptophan synthase subunit alpha compare
BPHYT_RS15915 -5.8 -8.9 ornithine carbamoyltransferase compare
BPHYT_RS17855 -5.8 -14.5 glutamate synthase compare
BPHYT_RS08955 -5.6 -6.7 homoserine dehydrogenase compare
BPHYT_RS14895 -5.5 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BPHYT_RS14855 -5.5 -3.8 ADP-L-glycero-D-manno-heptose-6-epimerase compare
BPHYT_RS14910 -5.4 -8.8 chorismate mutase compare
BPHYT_RS17690 -5.4 -14.4 imidazole glycerol phosphate synthase compare
BPHYT_RS33915 -5.3 -7.2 isopropylmalate isomerase compare
BPHYT_RS12845 -5.3 -17.8 ATPase compare
BPHYT_RS17390 -5.2 -15.3 anthranilate synthase subunit I compare
BPHYT_RS03150 -5.2 -13.2 Phosphoglycerate dehydrogenase (EC:1.1.1.95) (from data) compare
BPHYT_RS13220 -5.2 -9.8 phosphomethylpyrimidine synthase compare
BPHYT_RS17890 -5.1 -3.5 shikimate kinase compare
BPHYT_RS33900 -5.1 -13.5 3-isopropylmalate dehydrogenase compare
BPHYT_RS05225 -5.0 -9.9 phosphoenolpyruvate carboxylase compare
BPHYT_RS06900 -5.0 -6.4 aspartate aminotransferase compare
BPHYT_RS13920 -4.9 -10.8 Myo-inosose-2 dehydratase (EC 4.2.1.44) (from data) conserved
BPHYT_RS14190 -4.8 -11.6 carbamoyl phosphate synthase large subunit compare
BPHYT_RS02590 -4.8 -8.5 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase compare
BPHYT_RS14845 -4.8 -4.3 cysteine synthase compare
BPHYT_RS01595 -4.8 -9.3 homoserine O-acetyltransferase compare
BPHYT_RS04955 -4.7 -3.4 methionyl-tRNA synthetase compare
BPHYT_RS17405 -4.7 -1.9 indole-3-glycerol phosphate synthase compare
BPHYT_RS09515 -4.7 -4.5 phosphoribosylformylglycinamidine synthase compare
BPHYT_RS06175 -4.7 -5.1 LPS biosynthesis compare
BPHYT_RS08960 -4.7 -3.2 threonine synthase compare
BPHYT_RS33865 -4.6 -11.2 tryptophan synthase alpha chain compare
BPHYT_RS33645 -4.6 -6.9 homoserine kinase compare
BPHYT_RS33840 -4.5 -7.5 amidophosphoribosyltransferase compare
BPHYT_RS16675 -4.5 -3.1 dihydroorotase compare
BPHYT_RS13705 -4.5 -5.9 chorismate synthase compare
BPHYT_RS04385 -4.4 -5.1 nucleoside-diphosphate sugar oxidoreductase compare
BPHYT_RS12985 -4.3 -4.1 amino acid acetyltransferase compare
BPHYT_RS17675 -4.3 -3.9 phosphoribosyl-AMP cyclohydrolase compare
BPHYT_RS03640 -4.3 -4.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BPHYT_RS08850 -4.2 -4.0 transcriptional regulator compare
BPHYT_RS16905 -4.2 -5.5 orotidine 5'-phosphate decarboxylase compare
BPHYT_RS13895 -4.2 -3.4 sugar ABC transporter substrate-binding protein compare
BPHYT_RS33920 -4.2 -10.1 type II citrate synthase compare
BPHYT_RS06405 -4.2 -5.5 phosphoribosylamine--glycine ligase compare
BPHYT_RS08565 -4.2 -2.4 dihydroorotate dehydrogenase compare
BPHYT_RS17885 -4.1 -7.2 3-dehydroquinate synthase compare
BPHYT_RS06190 -4.1 -6.2 heptosyltransferase compare
BPHYT_RS16255 -4.1 -4.8 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
BPHYT_RS17380 -4.0 -13.1 ribulose-phosphate 3-epimerase compare
BPHYT_RS16270 -3.9 -4.2 phosphoglycerate kinase compare
BPHYT_RS17715 -3.8 -6.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
BPHYT_RS12815 -3.7 -8.5 IclR family transcriptional regulator compare
BPHYT_RS13925 -3.7 -7.5 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) (from data) conserved
BPHYT_RS16840 -3.7 -2.5 transketolase compare
BPHYT_RS16835 -3.6 -9.0 glyceraldehyde-3-phosphate dehydrogenase compare
BPHYT_RS13910 -3.6 -10.6 5-dehydro-2-deoxygluconokinase (EC 2.7.1.92); possible 5-dehydro-2-deoxyphosphogluconate aldolase DUF2090 (EC 4.1.2.29) (from data) conserved
BPHYT_RS17700 -3.4 -4.7 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) (from data) compare
BPHYT_RS33580 -3.4 -4.8 geranyltranstransferase compare
BPHYT_RS12530 -3.4 -3.6 ATP phosphoribosyltransferase regulatory subunit compare
BPHYT_RS10100 -3.4 -6.6 dihydroxy-acid dehydratase compare
BPHYT_RS06610 -3.3 -3.3 triosephosphate isomerase compare
BPHYT_RS18705 -3.3 -3.1 5,10-methylenetetrahydrofolate reductase compare
BPHYT_RS08245 -3.2 -7.8 anti-sigma factor compare
BPHYT_RS12285 -3.1 -8.8 isocitrate lyase compare
BPHYT_RS23840 -3.1 -4.8 methyltransferase compare
BPHYT_RS01590 -3.1 -8.1 methionine biosynthesis protein MetW compare
BPHYT_RS14865 -3.0 -3.8 UDP-glucose 6-dehydrogenase compare
BPHYT_RS06685 -2.9 -3.4 NADH:ubiquinone oxidoreductase subunit M compare
BPHYT_RS35885 -2.9 -6.4 hypothetical protein compare
BPHYT_RS04285 -2.8 -2.1 rhamnosyltransferase compare
BPHYT_RS13900 -2.8 -3.1 ATPase compare
BPHYT_RS04370 -2.7 -2.9 glycosyl transferase compare
BPHYT_RS09145 -2.7 -10.3 poly-beta-hydroxybutyrate polymerase compare
BPHYT_RS03535 -2.5 -6.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BPHYT_RS03725 -2.5 -2.7 serine hydroxymethyltransferase compare
BPHYT_RS04290 -2.4 -2.6 glycosyl transferase family 2 compare
BPHYT_RS12465 -2.4 -5.5 inositol monophosphatase compare
BPHYT_RS21560 -2.4 -7.8 GntR family transcriptional regulator conserved
BPHYT_RS02005 -2.3 -2.4 diguanylate phosphodiesterase compare
BPHYT_RS14195 -2.2 -2.9 carbamoyl phosphate synthase small subunit compare
BPHYT_RS02570 -2.2 -6.8 phosphocarrier protein HPr compare
BPHYT_RS19785 -2.2 -2.8 chemotaxis protein CheY compare
BPHYT_RS03625 -2.1 -11.7 Histidinol-phosphatase (EC:3.1.3.15) (from data) compare
BPHYT_RS09155 -2.1 -4.1 3-ketoacyl-ACP reductase compare
BPHYT_RS16735 -2.1 -5.7 phosphogluconate dehydratase compare
BPHYT_RS15670 -2.0 -9.8 phosphoribosylglycinamide formyltransferase compare
BPHYT_RS14900 -1.9 -3.3 prephenate dehydrogenase compare
BPHYT_RS15710 -1.9 -2.1 ATP-dependent Clp protease ATP-binding protein compare
BPHYT_RS16340 -1.9 -7.7 succinyl-CoA synthetase subunit alpha compare
BPHYT_RS04720 -1.9 -4.7 transcriptional regulator compare
BPHYT_RS13890 -1.9 -1.9 RpiR family transcriptional regulator compare
BPHYT_RS12150 -1.8 -12.0 PII uridylyl-transferase compare
BPHYT_RS27175 -1.8 -1.4 DNA-binding protein compare
BPHYT_RS16975 -1.8 -5.5 shikimate 5-dehydrogenase compare
BPHYT_RS13200 -1.8 -2.6 molybdopterin binding oxidoreductase compare
BPHYT_RS28825 -1.8 -4.8 methylmalonate-semialdehyde dehydrogenase compare
BPHYT_RS13605 -1.7 -1.3 tRNA-Pro compare
BPHYT_RS20505 -1.7 -1.8 carboxymethylenebutenolidase compare
BPHYT_RS03495 -1.6 -3.9 hypothetical protein compare
BPHYT_RS03645 -1.6 -2.6 tRNA dimethylallyltransferase compare
BPHYT_RS03570 -1.6 -5.4 heat-inducible transcription repressor HrcA compare
BPHYT_RS33905 -1.6 -0.8 3-isopropylmalate dehydratase small subunit compare
BPHYT_RS02865 -1.5 -2.9 hypothetical protein compare
BPHYT_RS08950 -1.5 -5.3 aminotransferase compare
BPHYT_RS29085 -1.5 -2.3 LysR family transcriptional regulator compare
BPHYT_RS06045 -1.4 -6.3 transaldolase compare
BPHYT_RS12615 -1.3 -1.8 dihydrodipicolinate synthase compare
BPHYT_RS34780 -1.3 -3.6 phytoene synthase compare
BPHYT_RS16345 -1.3 -3.8 succinyl-CoA ligase [ADP-forming] subunit beta compare
BPHYT_RS09160 -1.2 -4.7 polyhydroxyalkanoate synthesis repressor PhaR compare
BPHYT_RS04965 -1.2 -5.5 ATP-binding protein compare
BPHYT_RS27920 -1.2 -1.6 tricarballylate utilization protein B compare
BPHYT_RS12955 -1.2 -5.3 damage-inducible protein compare
BPHYT_RS28360 -1.2 -1.5 carboxymuconolactone decarboxylase compare
BPHYT_RS06350 -1.2 -2.3 chemotaxis protein CheY compare
BPHYT_RS15075 -1.2 -1.9 dihydrokaempferol 4-reductase compare
BPHYT_RS29620 -1.2 -1.1 hypothetical protein compare
BPHYT_RS20425 -1.2 -1.8 hypothetical protein compare
BPHYT_RS01485 -1.1 -1.0 histidine kinase compare
BPHYT_RS03235 -1.1 -2.3 enoyl-CoA hydratase compare
BPHYT_RS26025 -1.1 -1.1 hypothetical protein compare
BPHYT_RS15190 -1.1 -1.8 acyl carrier protein compare
BPHYT_RS17520 -1.1 -3.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
BPHYT_RS08130 -1.1 -1.5 transposase compare
BPHYT_RS36275 -1.0 -1.2 hypothetical protein compare
BPHYT_RS08600 -1.0 -1.7 hypothetical protein compare
BPHYT_RS02905 -1.0 -8.9 RNA polymerase subunit sigma-54 compare
BPHYT_RS04095 -1.0 -1.4 SAM-dependent methyltransferase PhcB compare
BPHYT_RS15615 -1.0 -2.7 4-hydroxy-3-methylbut-2-enyl diphosphate reductase compare
BPHYT_RS06195 -1.0 -1.9 membrane protein compare
BPHYT_RS33610 -1.0 -1.6 DNA polymerase I compare
BPHYT_RS09860 -1.0 -0.9 pilus assembly protein PilP compare
BPHYT_RS22360 -1.0 -2.3 response regulator receiver compare
BPHYT_RS05320 -1.0 -1.2 beta-lactamase compare
BPHYT_RS18340 -1.0 -1.1 n-acetyl-gamma-glutamyl-phosphate reductase compare
BPHYT_RS20790 -1.0 -2.0 TetR family transcriptional regulator compare
BPHYT_RS20220 -1.0 -1.6 antibiotic synthesis protein MbtH compare
BPHYT_RS31260 -1.0 -1.7 histidine kinase compare
BPHYT_RS06375 -1.0 -3.8 ribonuclease compare
BPHYT_RS15865 -1.0 -3.0 exodeoxyribonuclease VII large subunit compare
BPHYT_RS26355 -1.0 -1.7 hypothetical protein compare
BPHYT_RS05905 -1.0 -1.2 hypothetical protein compare
BPHYT_RS28945 -1.0 -3.1 endo-1,4-D-glucanase compare
BPHYT_RS33150 -0.9 -0.9 beta-lactamase compare
BPHYT_RS06410 -0.9 -1.5 transcriptional regulator compare
BPHYT_RS28705 -0.9 -1.5 IclR family transcriptional regulator compare
BPHYT_RS05730 -0.9 -3.5 hypothetical protein compare
BPHYT_RS17945 -0.9 -1.7 cytochrome C biogenesis protein compare
BPHYT_RS01240 -0.9 -2.1 hypothetical protein compare
BPHYT_RS01210 -0.9 -3.2 hypothetical protein compare
BPHYT_RS08125 -0.9 -5.5 ATPase compare
BPHYT_RS33360 -0.9 -1.8 formyl-CoA transferase compare
BPHYT_RS08800 -0.9 -4.8 sulfate ABC transporter permease compare
BPHYT_RS10315 -0.9 -1.4 MFS transporter compare
BPHYT_RS11765 -0.9 -1.0 polyamine ABC transporter permease compare
BPHYT_RS32200 -0.9 -1.4 lytic transglycosylase compare
BPHYT_RS13645 -0.9 -6.8 threonine--tRNA ligase compare
BPHYT_RS14550 -0.9 -1.1 tRNA-Asn compare
BPHYT_RS26775 -0.9 -1.4 chemotaxis protein CheB compare
BPHYT_RS06075 -0.9 -3.1 hypothetical protein compare
BPHYT_RS29245 -0.9 -1.8 peptidase M23 compare
BPHYT_RS29110 -0.9 -3.0 DNA-directed DNA polymerase compare
BPHYT_RS33375 -0.9 -1.4 membrane protein compare
BPHYT_RS02285 -0.9 -3.1 cell division protein compare
BPHYT_RS29540 -0.9 -1.3 aldolase compare
BPHYT_RS16290 -0.9 -1.0 hypothetical protein compare
BPHYT_RS17050 -0.9 -2.1 hypothetical protein compare
BPHYT_RS31815 -0.9 -2.9 hypothetical protein compare
BPHYT_RS13915 -0.9 -0.9 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase compare
BPHYT_RS08805 -0.9 -3.2 sulfate ABC transporter ATP-binding protein compare
BPHYT_RS17440 -0.9 -1.7 hypothetical protein compare
BPHYT_RS22530 -0.9 -1.7 N5,N10-methylene tetrahydromethanopterin reductase compare
BPHYT_RS15645 -0.8 -5.8 nicotinate-nucleotide pyrophosphorylase compare
BPHYT_RS06320 -0.8 -2.2 chemotaxis protein CheY compare
BPHYT_RS25595 -0.8 -2.2 ATPase AAA compare
BPHYT_RS34295 -0.8 -0.8 fimbrial protein compare
BPHYT_RS07935 -0.8 -1.4 Rrf2 family transcriptional regulator compare
BPHYT_RS20305 -0.8 -4.0 hypothetical protein compare
BPHYT_RS15650 -0.8 -6.1 quinolinate synthetase compare
BPHYT_RS33385 -0.8 -1.5 major facilitator superfamily protein compare
BPHYT_RS21595 -0.8 -1.5 TetR family transcriptional regulator compare
BPHYT_RS11960 -0.8 -1.1 MarR family transcriptional regulator compare
BPHYT_RS24665 -0.8 -1.8 ABC transporter permease compare
BPHYT_RS00540 -0.8 -3.0 hypothetical protein compare
BPHYT_RS17445 -0.8 -2.9 GTP-binding protein YchF compare
BPHYT_RS10345 -0.8 -1.0 flagellar motor protein MotB compare
BPHYT_RS12055 -0.8 -6.0 phosphoenolpyruvate synthase compare
BPHYT_RS30130 -0.8 -2.1 AraC family transcriptional regulator compare


Specific Phenotypes

For 4 genes in this experiment

For carbon source m-Inositol in Burkholderia phytofirmans PsJN

For carbon source m-Inositol across organisms